Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCGGCAAATCGTAACATTCCCTTTGCAGAGATGCCAGAGAGCTCTGGCTGCCATGGCTTTCATCTGGGCCTTGGTGGCTGGGTCCTCGAATTCCCTTCCCTTAATGCTGGCCCCAGACAATGCGGCGTGCTGCTGGTGTGGCCGCCCCCCCTTCCCATGGCTATGCGATTCCTGTGGATTTGACTGTCCCTTACTAGGACTCTTCATAGCCATCGTGTTGGTAACTACATTATGCATTTGGCTAGATATTTGGTTTCCCGTTGGATGGTTAATACAATTACTCGTTTGCTTATCATCCTCTTCCTCTCCATTTTTCTCTTTTTGGTCAGAACTACTATTAGCCATTAACACTGAATGAATCGACATTTGCTGTTTGGTAGCAATGGCGTACCTACTGTGTTCTTGGATGGTCTCGAATGCGAGATGGCTCACCAGCAGCCGGATTACATTGTTCTGAGCAAAATGGTCTTGGCATTTCGGATGATGCGTCGCCATTTCCGACACAGCCCAAGCCACCACAGATTGAACCTTCATGTGGCCGTCTTTGAGAATTTTCGCAAACACCGAGCAGACACCACCATTCACAATCTGTTCGACGCTTTCCGAGTCTCGACCCAGCAGCCCAATGGCCCTCGCGGCGTGTTCCTGACCCTCCATCCGCCCTTCCTTGGCCAGTTTCAGGAGCGGCGCGACGCCACCTTCCTCGATGATCAGCTTGCCGTACCGATCGTTGTCCCGAGCCAACGACGACAGTGAGGCAGCGGCGTCGGATCGTTCCTCTAATGTACCCGTGTGGAGAATCGCTACCTGTTCCCATATCAATCCCAAAATTGGCTCGTTGGCAGCGATGGGAGGGAGACCCAGATACTCATCGTCGCGATCTTCGGCCGGGGCGGAGACCCGTAGGAGCCAAGAGACATCGCCGATTGAATTCTCGAGCTGCGTGGAGGTTTTCTTGAAGGCAGCGGCGGGGATGATGGTGAACATTCTCTTCATGATGCCATTGGCGCGGCACTTGATGACGAGCGTGAGGGCCTTGTCGAGGACCTGCTCGGTGTCGTCGATGATCCGGCGGGTGGGGCGCTCGTAGAGATCGTTGCTGGCCCGAGCGGCTTGGCGGAGAAGGGCGGCGAGCTTCTCGGTTTTGGTCTTGAGTTCGATGCATTCTTGTTTGAAAGACTGGGCACCGTCGGCGTTCTTGGCGACCTGGTCTGCTAA
mRNA sequence
ATGTTGCGGCAAATCGTAACATTCCCTTTGCAGAGATGCCAGAGAGCTCTGGCTGCCATGGCTTTCATCTGGGCCTTGGTGGCTGGGTCCTCGAATTCCCTTCCCTTAATGCTGGCCCCAGACAATGCGGCGTGCTGCTGCAATGGCGTACCTACTGTGTTCTTGGATGGTCTCGAATGCGAGATGGCTCACCAGCAGCCGGATTACATTGTTCTGAGCAAAATGGTCTTGGCATTTCGGATGATGCGTCGCCATTTCCGACACAGCCCAAGCCACCACAGATTGAACCTTCATGTGGCCGTCTTTGAGAATTTTCGCAAACACCGAGCAGACACCACCATTCACAATCTGTTCGACGCTTTCCGAGTCTCGACCCAGCAGCCCAATGGCCCTCGCGGCGTGTTCCTGACCCTCCATCCGCCCTTCCTTGGCCAGTTTCAGGAGCGGCGCGACGCCACCTTCCTCGATGATCAGCTTGCCGTACCGATCGTTGTCCCGAGCCAACGACGACACGGCGGGGATGATGGTGAACATTCTCTTCATGATGCCATTGGCGCGGCACTTGATGACGAGCGTGAGGGCCTTGTCGAGGACCTGCTCGGTGTCGTCGATGATCCGGCGGGTGGGGCGCTCGTAGAGATCGTTGCTGGCCCGAGCGGCTTGGCGGAGAAGGGCGGCGAGCTTCTCGGTTTTGGTCTTGAGTTCGATGCATTCTTGTTTGAAAGACTGGGCACCGTCGGCGTTCTTGGCGACCTGGTCTGCTAA
Coding sequence (CDS)
ATGTTGCGGCAAATCGTAACATTCCCTTTGCAGAGATGCCAGAGAGCTCTGGCTGCCATGGCTTTCATCTGGGCCTTGGTGGCTGGGTCCTCGAATTCCCTTCCCTTAATGCTGGCCCCAGACAATGCGGCGTGCTGCTGCAATGGCGTACCTACTGTGTTCTTGGATGGTCTCGAATGCGAGATGGCTCACCAGCAGCCGGATTACATTGTTCTGAGCAAAATGGTCTTGGCATTTCGGATGATGCGTCGCCATTTCCGACACAGCCCAAGCCACCACAGATTGAACCTTCATGTGGCCGTCTTTGAGAATTTTCGCAAACACCGAGCAGACACCACCATTCACAATCTGTTCGACGCTTTCCGAGTCTCGACCCAGCAGCCCAATGGCCCTCGCGGCGTGTTCCTGACCCTCCATCCGCCCTTCCTTGGCCAGTTTCAGGAGCGGCGCGACGCCACCTTCCTCGATGATCAGCTTGCCGTACCGATCGTTGTCCCGAGCCAACGACGACACGGCGGGGATGATGGTGAACATTCTCTTCATGATGCCATTGGCGCGGCACTTGATGACGAGCGTGAGGGCCTTGTCGAGGACCTGCTCGGTGTCGTCGATGATCCGGCGGGTGGGGCGCTCGTAGAGATCGTTGCTGGCCCGAGCGGCTTGGCGGAGAAGGGCGGCGAGCTTCTCGGTTTTGGTCTTGAGTTCGATGCATTCTTGTTTGAAAGACTGGGCACCGTCGGCGTTCTTGGCGACCTGGTCTGCTAA
Protein sequence
MLRQIVTFPLQRCQRALAAMAFIWALVAGSSNSLPLMLAPDNAACCCNGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRKHRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQERRDATFLDDQLAVPIVVPSQRRHGGDDGEHSLHDAIGAALDDEREGLVEDLLGVVDDPAGGALVEIVAGPSGLAEKGGELLGFGLEFDAFLFERLGTVGVLGDLVC
Homology
BLAST of Sgr023798 vs. NCBI nr
Match:
PON99455.1 (hypothetical protein TorRG33x02_046220 [Trema orientale])
HSP 1 Score: 171.8 bits (434), Expect = 7.7e-39
Identity = 104/277 (37.55%), Postives = 141/277 (50.90%), Query Frame = 0
Query: 48 NGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRK 107
NGV T+ L+ LE E+A++Q +YIVL K +LAFR++ FRH PS H LNLH VFE+FRK
Sbjct: 130 NGVLTMLLNSLESEVANEQANYIVLGKKILAFRVVSGKFRHRPSRHGLNLHWTVFEDFRK 189
Query: 108 HRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQERRDATFLDDQLAVPIVVPS 167
HR ++ + ++ AFRV+ +Q N + L L QFQ+R + +FL++QL +P+V+PS
Sbjct: 190 HRTNSRMDHVLHAFRVTAKQSNCSGSILLALRLTIFNQFQQRSNPSFLNNQLPIPVVIPS 249
Query: 168 QR---------------------------------------------------------- 227
+R
Sbjct: 250 KRNQRSRRIRSAFKRTRIENSNLFPYEAENRLVGGDGRQSQVPIVSSIGRGRDTEEPGHI 309
Query: 228 -------------RHGGDDGEHSLHDAIGAALDDEREGLVEDLLGVVDDPAGGALVEIVA 254
R GG+DGE LH+AIGAAL+ + EGLVE+LLGV+DDP GAL+E+
Sbjct: 310 SYRILELRRHFPERCGGNDGEDPLHEAIGAALEGQGEGLVENLLGVIDDPLCGALIEVRT 369
BLAST of Sgr023798 vs. NCBI nr
Match:
PON53440.1 (hypothetical protein PanWU01x14_201600 [Parasponia andersonii])
HSP 1 Score: 124.4 bits (311), Expect = 1.4e-24
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = 0
Query: 48 NGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRK 107
NGV T+ L+ LE E+A++Q +YIVL K +LAFR++ FRH P H LNLH VFE+FRK
Sbjct: 130 NGVLTMLLNSLESEVANEQANYIVLGKKILAFRVVSGKFRHRPGRHGLNLHWTVFEDFRK 189
Query: 108 HRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQERRDATFLDDQLAVPIVVPS 167
HR ++ + ++ AFRV+ +Q N + L L QFQ+R + TFL++QL +P+V+PS
Sbjct: 190 HRTNSRMDHVLHAFRVTAKQSNRSGSILLALQLTIFNQFQQRSNPTFLNNQLPIPVVIPS 249
Query: 168 QR 170
+R
Sbjct: 250 KR 251
BLAST of Sgr023798 vs. NCBI nr
Match:
CAA2634507.1 (unnamed protein product [Spirodela intermedia])
HSP 1 Score: 111.7 bits (278), Expect = 9.4e-21
Identity = 81/223 (36.32%), Postives = 107/223 (47.98%), Query Frame = 0
Query: 48 NGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRK 107
+GV V LDGLE E+A +Q D ++L + VLAF + F P HH LN+H E+ RK
Sbjct: 46 DGVLAVLLDGLEGEVADEQADDVILGEEVLAFGIADGKFGDGPGHHGLNIHRPFLEHLRK 105
Query: 108 HRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQERRDA--------------- 167
AD + +L ++ Q+ +GP G L L PFL Q +ER +A
Sbjct: 106 DSADACVEHLVHTLWIAAQEADGPGGALLALCSPFLDQLEERTNAGHEGRRGVGAVLEGA 165
Query: 168 --TFLD-------------DQLAVPIVVPSQRRH----------------GGDDGEHSLH 224
F D D+ + V Q H G DGE +L+
Sbjct: 166 VVEFRDLLPNQAENRLVGGDRGESKVTVVVQPGHIPDGVLQLGGHLLEGCSGYDGEDALY 225
BLAST of Sgr023798 vs. NCBI nr
Match:
CAA7410728.1 (unnamed protein product [Spirodela intermedia])
HSP 1 Score: 104.8 bits (260), Expect = 1.1e-18
Identity = 82/242 (33.88%), Postives = 109/242 (45.04%), Query Frame = 0
Query: 48 NGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRK 107
+GV V LDGLE E+A +Q D ++L + VLAF + F P HH LN+H E+ RK
Sbjct: 46 DGVLAVLLDGLEGEVADEQADDVILGEEVLAFGIADGKFGDGPGHHGLNIHRPFLEHLRK 105
Query: 108 HRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQERRDA--------------- 167
AD + +L ++ Q+ +GP G L L PFL Q +ER +A
Sbjct: 106 DSADACVEHLVHTLWIAAQEADGPGGALLALCSPFLDQLEERTNAGHEGRRGVGAVLEGA 165
Query: 168 --TFLD-----------------DQLAVPIVV---------------PSQRRH------- 224
F D ++ V +VV Q H
Sbjct: 166 VVEFRDLLPNQAENRLVGGDRGESKVTVVVVVVVAAAAATASAGGGHSEQPGHIPDGVLQ 225
BLAST of Sgr023798 vs. NCBI nr
Match:
CAA7391378.1 (unnamed protein product [Spirodela intermedia])
HSP 1 Score: 84.0 bits (206), Expect = 2.1e-12
Identity = 78/251 (31.08%), Postives = 109/251 (43.43%), Query Frame = 0
Query: 48 NGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRK 107
+GV V L+G E E++ ++ D +VL + VLA ++ H L+LH A E+ +
Sbjct: 28 DGVLAVLLEGFEGEVSDEEADDVVLGEFVLAREVLVDELGDGVGHRGLHLHGAFLEHLGE 87
Query: 108 HRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQER------------------ 167
ADT + L +A RVS QQ +G GV L L PFL Q QER
Sbjct: 88 DGADTGLDQLLNALRVSGQQEDGLHGVLLPLRFPFLHQLQERPHAGDELGGGGRPLLERA 147
Query: 168 ------RDATFLDDQL-------------------AVPIVVPSQRRHGGDDGEHSLHDAI 227
R +D+L A+ VVP+ H G+
Sbjct: 148 VLELCHRFPDQAEDRLVGGDGRKPQTYVVVVVGVAALSTVVPACGGHSQQPGDVGDAAVG 207
Query: 228 GAALDDEREGLVEDLLGVVDDPAGGALVEIVAGPSGLAEKGGELLGFGLEFDAFLFE-RL 255
GAAL + L +DLL +V +P LVEI AG GL E+ + + E + FE +
Sbjct: 208 GAALGGDGVRLFQDLLRLVHNPPRRPLVEIGAG--GLPEQRRQPIRLHPEINVVGFEGGV 267
BLAST of Sgr023798 vs. ExPASy TrEMBL
Match:
A0A2P5FNT6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_046220 PE=4 SV=1)
HSP 1 Score: 171.8 bits (434), Expect = 3.7e-39
Identity = 104/277 (37.55%), Postives = 141/277 (50.90%), Query Frame = 0
Query: 48 NGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRK 107
NGV T+ L+ LE E+A++Q +YIVL K +LAFR++ FRH PS H LNLH VFE+FRK
Sbjct: 130 NGVLTMLLNSLESEVANEQANYIVLGKKILAFRVVSGKFRHRPSRHGLNLHWTVFEDFRK 189
Query: 108 HRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQERRDATFLDDQLAVPIVVPS 167
HR ++ + ++ AFRV+ +Q N + L L QFQ+R + +FL++QL +P+V+PS
Sbjct: 190 HRTNSRMDHVLHAFRVTAKQSNCSGSILLALRLTIFNQFQQRSNPSFLNNQLPIPVVIPS 249
Query: 168 QR---------------------------------------------------------- 227
+R
Sbjct: 250 KRNQRSRRIRSAFKRTRIENSNLFPYEAENRLVGGDGRQSQVPIVSSIGRGRDTEEPGHI 309
Query: 228 -------------RHGGDDGEHSLHDAIGAALDDEREGLVEDLLGVVDDPAGGALVEIVA 254
R GG+DGE LH+AIGAAL+ + EGLVE+LLGV+DDP GAL+E+
Sbjct: 310 SYRILELRRHFPERCGGNDGEDPLHEAIGAALEGQGEGLVENLLGVIDDPLCGALIEVRT 369
BLAST of Sgr023798 vs. ExPASy TrEMBL
Match:
A0A2P5BXD0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_201600 PE=4 SV=1)
HSP 1 Score: 124.4 bits (311), Expect = 6.8e-25
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = 0
Query: 48 NGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRK 107
NGV T+ L+ LE E+A++Q +YIVL K +LAFR++ FRH P H LNLH VFE+FRK
Sbjct: 130 NGVLTMLLNSLESEVANEQANYIVLGKKILAFRVVSGKFRHRPGRHGLNLHWTVFEDFRK 189
Query: 108 HRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQERRDATFLDDQLAVPIVVPS 167
HR ++ + ++ AFRV+ +Q N + L L QFQ+R + TFL++QL +P+V+PS
Sbjct: 190 HRTNSRMDHVLHAFRVTAKQSNRSGSILLALQLTIFNQFQQRSNPTFLNNQLPIPVVIPS 249
Query: 168 QR 170
+R
Sbjct: 250 KR 251
BLAST of Sgr023798 vs. ExPASy TrEMBL
Match:
A0A7I8JTK4 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_18019915 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 4.6e-21
Identity = 81/223 (36.32%), Postives = 107/223 (47.98%), Query Frame = 0
Query: 48 NGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRK 107
+GV V LDGLE E+A +Q D ++L + VLAF + F P HH LN+H E+ RK
Sbjct: 46 DGVLAVLLDGLEGEVADEQADDVILGEEVLAFGIADGKFGDGPGHHGLNIHRPFLEHLRK 105
Query: 108 HRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQERRDA--------------- 167
AD + +L ++ Q+ +GP G L L PFL Q +ER +A
Sbjct: 106 DSADACVEHLVHTLWIAAQEADGPGGALLALCSPFLDQLEERTNAGHEGRRGVGAVLEGA 165
Query: 168 --TFLD-------------DQLAVPIVVPSQRRH----------------GGDDGEHSLH 224
F D D+ + V Q H G DGE +L+
Sbjct: 166 VVEFRDLLPNQAENRLVGGDRGESKVTVVVQPGHIPDGVLQLGGHLLEGCSGYDGEDALY 225
BLAST of Sgr023798 vs. ExPASy TrEMBL
Match:
J3MV20 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 86/278 (30.94%), Postives = 120/278 (43.17%), Query Frame = 0
Query: 48 NGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRK 107
+GV V L LE E+ ++ D I L + VLAF ++ P H L+LH V E+ +
Sbjct: 26 DGVLGVLLHRLEGEVGDEEADDIALEEGVLAFGVVGGELGDGPGDHALHLHGRVLEDLGE 85
Query: 108 HRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQERRDATFLDDQLAVPIVV-- 167
AD H+ DA V+ ++ +G RG L L L + ++RRDA LDD+ V ++V
Sbjct: 86 GGADAGEHHELDALGVTAEEADGERGGLLALGAALLDEAEQRRDAVLLDDEPPVAVIVAR 145
Query: 168 ------------------------PSQRRH------------------------------ 227
P + +
Sbjct: 146 EGDDAGGGVGAGLGVAGVEDGDLLPDEEENGLVLRDGREADVVVEVVGVAVVGDAEDPGE 205
Query: 228 ----------------GGDDGEHSLHDAIGAALDDEREGLVEDLLGVVDDPAGGALVEIV 254
GGDDGE + +A+ AA ++R GLVE L GV + AGG LVE+
Sbjct: 206 VAEGVVQLVGRLLEGAGGDDGEDAADEAVAAAPVEQRGGLVERLAGVFEVAAGGPLVEVG 265
BLAST of Sgr023798 vs. ExPASy TrEMBL
Match:
A0A7I8LN90 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_18021406 PE=4 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 5.6e-19
Identity = 82/242 (33.88%), Postives = 109/242 (45.04%), Query Frame = 0
Query: 48 NGVPTVFLDGLECEMAHQQPDYIVLSKMVLAFRMMRRHFRHSPSHHRLNLHVAVFENFRK 107
+GV V LDGLE E+A +Q D ++L + VLAF + F P HH LN+H E+ RK
Sbjct: 46 DGVLAVLLDGLEGEVADEQADDVILGEEVLAFGIADGKFGDGPGHHGLNIHRPFLEHLRK 105
Query: 108 HRADTTIHNLFDAFRVSTQQPNGPRGVFLTLHPPFLGQFQERRDA--------------- 167
AD + +L ++ Q+ +GP G L L PFL Q +ER +A
Sbjct: 106 DSADACVEHLVHTLWIAAQEADGPGGALLALCSPFLDQLEERTNAGHEGRRGVGAVLEGA 165
Query: 168 --TFLD-----------------DQLAVPIVV---------------PSQRRH------- 224
F D ++ V +VV Q H
Sbjct: 166 VVEFRDLLPNQAENRLVGGDRGESKVTVVVVVVVAAAAATASAGGGHSEQPGHIPDGVLQ 225
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
PON99455.1 | 7.7e-39 | 37.55 | hypothetical protein TorRG33x02_046220 [Trema orientale] | [more] |
PON53440.1 | 1.4e-24 | 47.54 | hypothetical protein PanWU01x14_201600 [Parasponia andersonii] | [more] |
CAA2634507.1 | 9.4e-21 | 36.32 | unnamed protein product [Spirodela intermedia] | [more] |
CAA7410728.1 | 1.1e-18 | 33.88 | unnamed protein product [Spirodela intermedia] | [more] |
CAA7391378.1 | 2.1e-12 | 31.08 | unnamed protein product [Spirodela intermedia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2P5FNT6 | 3.7e-39 | 37.55 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_046220 PE=4 SV... | [more] |
A0A2P5BXD0 | 6.8e-25 | 47.54 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_201600 PE... | [more] |
A0A7I8JTK4 | 4.6e-21 | 36.32 | Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_18019915 PE=4 SV... | [more] |
J3MV20 | 1.9e-19 | 30.94 | Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | [more] |
A0A7I8LN90 | 5.6e-19 | 33.88 | Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_18021406 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |