Sgr023755 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr023755
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationtig00000892: 6321571 .. 6322138 (-)
RNA-Seq ExpressionSgr023755
SyntenySgr023755
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATTCCGGTTAATGTGGGTGACATAGTCATTTTTGGCGGCTGCCCCACTGAAGTAAACGAAGTCATCAAACCACCCCATACAAATTTTCATTAAAGGACCTGAAAACTCTCAATTACTTTCTCGGTGTGGAAATTATCAAGTGCTCAGGGTGATCAACTTCCACCTCAAACGGATTACGTTTTTGACTTGTTGAAGAGGACTACTATAGAAAATGCATGTTCCATTTCTACAACCATGTCAGCGGCCTTTGTTGCCTATAATGACGATTGCTTTTCTAATGCTAATGTAAAGTGGAGGCGATGCAATATGCTAATTTCACACGTTCAGATAGGGTTTTGGTGTCAACAAAGTCGGCCAATTTATGCATAATCCTCCAGCGTGTCATTGGAAAGCTGTCGAGGAAGTTTTGCGTTATCAGAGGTTTCTCGACCATGGTGCGGCTTGCTGCACAGTTGATGTATCACTTCATGCCTATGTGGATGTTGATTGGGCTTCTGAACGAGATGATTGCAAGACAACTACTGGTTTTGCTACATTTTTTTGTGGAAATCTTGCCACTTAG

mRNA sequence

ATGTACATTCCGGTTAATGTGGGTGACATAGTCATTTTTGGCGGCTGCCCCACTGAAGGTGATCAACTTCCACCTCAAACGGATTACGTTTTTGACTTGTTGAAGAGGACTACTATAGAAAATGCATGTTCCATTTCTACAACCATGTCAGCGGCCTTTGTTGCCTATAATGACGATTGCTTTTCTAATGCTAATGGTTTTGGTGTCAACAAAGTCGGCCAATTTATGCATAATCCTCCAGCGTGTCATTGGAAAGCTGTCGAGGAAGTTTTGCGTTATCAGAGGTTTCTCGACCATGGTGCGGCTTGCTGCACAGTTGATGTATCACTTCATGCCTATGTGGATGTTGATTGGGCTTCTGAACGAGATGATTGCAAGACAACTACTGGTTTTGCTACATTTTTTTGTGGAAATCTTGCCACTTAG

Coding sequence (CDS)

ATGTACATTCCGGTTAATGTGGGTGACATAGTCATTTTTGGCGGCTGCCCCACTGAAGGTGATCAACTTCCACCTCAAACGGATTACGTTTTTGACTTGTTGAAGAGGACTACTATAGAAAATGCATGTTCCATTTCTACAACCATGTCAGCGGCCTTTGTTGCCTATAATGACGATTGCTTTTCTAATGCTAATGGTTTTGGTGTCAACAAAGTCGGCCAATTTATGCATAATCCTCCAGCGTGTCATTGGAAAGCTGTCGAGGAAGTTTTGCGTTATCAGAGGTTTCTCGACCATGGTGCGGCTTGCTGCACAGTTGATGTATCACTTCATGCCTATGTGGATGTTGATTGGGCTTCTGAACGAGATGATTGCAAGACAACTACTGGTTTTGCTACATTTTTTTGTGGAAATCTTGCCACTTAG

Protein sequence

MYIPVNVGDIVIFGGCPTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAAFVAYNDDCFSNANGFGVNKVGQFMHNPPACHWKAVEEVLRYQRFLDHGAACCTVDVSLHAYVDVDWASERDDCKTTTGFATFFCGNLAT
Homology
BLAST of Sgr023755 vs. NCBI nr
Match: XP_022153320.1 (uncharacterized protein LOC111020844 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 4.7e-14
Identity = 54/148 (36.49%), Postives = 73/148 (49.32%), Query Frame = 0

Query: 17  PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAA--FVAYNDDCFSNAN--------- 76
           P +G     Q+ Y+ DLL +  +  A +IST M +     A   D F + +         
Sbjct: 170 PPQGGLFLSQSKYIMDLLVKARMAEAHAISTPMVSGPLLSARQGDKFVDVHQYRGIVGAL 229

Query: 77  ----------GFGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHGAACC-TVDVSLHAY 136
                      F +NK  Q MH+P   HW+ V+ +LRY +  +DHG         SLH Y
Sbjct: 230 QYATLTRPNISFSINKACQSMHSPTLVHWQLVKRILRYLKGIVDHGLLLSKPSQFSLHGY 289

Query: 137 VDVDWASERDDCKTTTGFATFFCGNLAT 142
           VDVDWAS+ DD K+T+GF  FF GNL T
Sbjct: 290 VDVDWASDPDDRKSTSGFCVFFGGNLVT 317

BLAST of Sgr023755 vs. NCBI nr
Match: XP_016902754.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 0

Query: 17  PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAAFVAYNDDCFSNANGFGVNKVGQFM 76
           PT G     Q+ Y+ DLL+RT +  A  IST M A               + VNK  QFM
Sbjct: 38  PTNGGLFLSQSKYITDLLQRTKMLEAKPISTPMYATLT-------HPEISYSVNKACQFM 97

Query: 77  HNPPACHWKAVEEVLRYQR-FLDHGAACCTVD-VSLHAYVDVDWASERDDCKTTTGFATF 136
           H P   HW+ V+ +LRY +  L HG      D +SL  + D DWAS+ DD K+T+GF  +
Sbjct: 98  HTPKHTHWQLVKRILRYLKGVLYHGLWFRKSDNMSLVGFADADWASDPDDRKSTSGFYVY 157

Query: 137 FCGNLAT 142
           F  NL +
Sbjct: 158 FGNNLVS 157

BLAST of Sgr023755 vs. NCBI nr
Match: KAA0046194.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14161.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 53/167 (31.74%), Postives = 82/167 (49.10%), Query Frame = 0

Query: 6   NVGDIVIFGGC----PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAAFV--AYNDD 65
           ++GD+  F G     PT G     Q  Y+ DLL++T I +A  IST M +  +  A+  +
Sbjct: 23  DLGDLSYFLGIEVSYPTNGGMFLSQAKYITDLLQKTKIFDAKPISTPMVSGQLVSAHQGE 82

Query: 66  CFSNAN-----------------------GFGVNKVGQFMHNPPACHWKAVEEVLRYQR- 125
            F   +                        + VNK  QFMH+P   HW+ V+ +LRY + 
Sbjct: 83  NFHYIHLYRSTVGALKYALQYATVTHPEISYSVNKACQFMHSPKLIHWQLVKRILRYLKG 142

Query: 126 FLDHGA-ACCTVDVSLHAYVDVDWASERDDCKTTTGFATFFCGNLAT 142
            L HG    C+ ++S+  +VD DWAS+ DD K+T+G+  +F   L +
Sbjct: 143 SLSHGLWLQCSTNLSIVGFVDADWASDPDDMKSTSGYCVYFGNTLVS 189

BLAST of Sgr023755 vs. NCBI nr
Match: KAA0045109.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23629.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = 0

Query: 17  PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAAFV--AYNDDCFSNAN--------- 76
           PT G     Q  Y+ DLL++T + +A  IST M +  +  A+  + F + +         
Sbjct: 38  PTNGGMFLSQAKYITDLLQKTKMFDAKPISTPMVSGQLVSAHQGENFHDIHLYRRTVGAL 97

Query: 77  ----------GFGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHGA-ACCTVDVSLHAY 136
                      + VNK  QFMH+P   HW+ V+ +LRY +  L HG    C+ ++SL  +
Sbjct: 98  QYATLTHPEISYSVNKACQFMHSPKLIHWQLVKRILRYLKGSLSHGLWLRCSTNLSLVGF 157

Query: 137 VDVDWASERDDCKTTTGFATFFCGNLAT 142
            D DWAS+ DD K+T+G+  +F  NL +
Sbjct: 158 ADADWASDPDDRKSTSGYCVYFGNNLVS 185

BLAST of Sgr023755 vs. NCBI nr
Match: XP_022157873.1 (uncharacterized protein LOC111024485 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-12
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 67  FGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHGAACC-TVDVSLHAYVDVDWASERDD 126
           F VNK  QFMH+P   HW+ V+ +LRY +  +DHG      +  SLH Y D DWAS+ DD
Sbjct: 50  FSVNKACQFMHSPTLIHWQLVKRILRYLKGTIDHGLFLAKPITFSLHGYADEDWASDPDD 109

Query: 127 CKTTTGFATFFCGNLAT 142
            K+T+GF  FF GNL T
Sbjct: 110 RKSTSGFCVFFGGNLVT 126

BLAST of Sgr023755 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 42/136 (30.88%), Postives = 60/136 (44.12%), Query Frame = 0

Query: 26   QTDYVFDLLKRTTIENACSISTTM-------------------------SAAFVAYNDDC 85
            Q  Y  DLL RT +  A  ++T M                         S  ++A+    
Sbjct: 1185 QRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPD 1244

Query: 86   FSNANGFGVNKVGQFMHNPPACHWKAVEEVLRYQRFL-DHGAACCTVD-VSLHAYVDVDW 135
             S    + VN++ Q+MH P   HW A++ VLRY     DHG      + +SLHAY D DW
Sbjct: 1245 LS----YAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADW 1304

BLAST of Sgr023755 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-07
Identity = 40/137 (29.20%), Postives = 60/137 (43.80%), Query Frame = 0

Query: 26   QTDYVFDLLKRTTIENACSISTTM--SAAFVAYNDDCFSNAN------------------ 85
            Q  Y+ DLL RT +  A  ++T M  S     Y+    ++                    
Sbjct: 1202 QRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPD 1261

Query: 86   -GFGVNKVGQFMHNPPACHWKAVEEVLRYQR-------FLDHGAACCTVDVSLHAYVDVD 135
              + VN++ QFMH P   H +A++ +LRY         FL  G       +SLHAY D D
Sbjct: 1262 ISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNT-----LSLHAYSDAD 1321

BLAST of Sgr023755 vs. ExPASy TrEMBL
Match: A0A6J1DGH4 (uncharacterized protein LOC111020844 OS=Momordica charantia OX=3673 GN=LOC111020844 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-14
Identity = 54/148 (36.49%), Postives = 73/148 (49.32%), Query Frame = 0

Query: 17  PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAA--FVAYNDDCFSNAN--------- 76
           P +G     Q+ Y+ DLL +  +  A +IST M +     A   D F + +         
Sbjct: 170 PPQGGLFLSQSKYIMDLLVKARMAEAHAISTPMVSGPLLSARQGDKFVDVHQYRGIVGAL 229

Query: 77  ----------GFGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHGAACC-TVDVSLHAY 136
                      F +NK  Q MH+P   HW+ V+ +LRY +  +DHG         SLH Y
Sbjct: 230 QYATLTRPNISFSINKACQSMHSPTLVHWQLVKRILRYLKGIVDHGLLLSKPSQFSLHGY 289

Query: 137 VDVDWASERDDCKTTTGFATFFCGNLAT 142
           VDVDWAS+ DD K+T+GF  FF GNL T
Sbjct: 290 VDVDWASDPDDRKSTSGFCVFFGGNLVT 317

BLAST of Sgr023755 vs. ExPASy TrEMBL
Match: A0A1S4E3F1 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107991866 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 0

Query: 17  PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAAFVAYNDDCFSNANGFGVNKVGQFM 76
           PT G     Q+ Y+ DLL+RT +  A  IST M A               + VNK  QFM
Sbjct: 38  PTNGGLFLSQSKYITDLLQRTKMLEAKPISTPMYATLT-------HPEISYSVNKACQFM 97

Query: 77  HNPPACHWKAVEEVLRYQR-FLDHGAACCTVD-VSLHAYVDVDWASERDDCKTTTGFATF 136
           H P   HW+ V+ +LRY +  L HG      D +SL  + D DWAS+ DD K+T+GF  +
Sbjct: 98  HTPKHTHWQLVKRILRYLKGVLYHGLWFRKSDNMSLVGFADADWASDPDDRKSTSGFYVY 157

Query: 137 FCGNLAT 142
           F  NL +
Sbjct: 158 FGNNLVS 157

BLAST of Sgr023755 vs. ExPASy TrEMBL
Match: A0A6J1DUJ4 (uncharacterized protein LOC111024485 OS=Momordica charantia OX=3673 GN=LOC111024485 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 67  FGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHGAACC-TVDVSLHAYVDVDWASERDD 126
           F VNK  QFMH+P   HW+ V+ +LRY +  +DHG      +  SLH Y D DWAS+ DD
Sbjct: 50  FSVNKACQFMHSPTLIHWQLVKRILRYLKGTIDHGLFLAKPITFSLHGYADEDWASDPDD 109

Query: 127 CKTTTGFATFFCGNLAT 142
            K+T+GF  FF GNL T
Sbjct: 110 RKSTSGFCVFFGGNLVT 126

BLAST of Sgr023755 vs. ExPASy TrEMBL
Match: A0A1S4E598 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107992166 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.8e-12
Identity = 48/148 (32.43%), Postives = 77/148 (52.03%), Query Frame = 0

Query: 17  PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAA--FVAYNDDCFSNAN--------- 76
           PT G     Q+ Y+ DLL+RT + +A  IST+M +     A+  + F + +         
Sbjct: 38  PTNGGLFLSQSKYITDLLQRTKMLDAKPISTSMVSGPLLSAFQGELFHDVHLYRSIVGAL 97

Query: 77  ----------GFGVNKVGQFMHNPPACHWKAVEEVLRYQRFLDHGAACCTV--DVSLHAY 136
                      + VNK  QF+H P   HW+ V+++LRY + + + A   +   ++SL  +
Sbjct: 98  QYATLTHPEISYSVNKACQFIHTPKHTHWQLVKKILRYLKGVLYHALWLSKSDNMSLDGF 157

Query: 137 VDVDWASERDDCKTTTGFATFFCGNLAT 142
           VD DWAS+ DD K+T+GF  +F  NL +
Sbjct: 158 VDADWASDPDDRKSTSGFCVYFGNNLVS 185

BLAST of Sgr023755 vs. ExPASy TrEMBL
Match: A0A2Z6M4W5 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_108020 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 52/147 (35.37%), Postives = 73/147 (49.66%), Query Frame = 0

Query: 20  GDQLPPQTDYVFDLLKRTTIENACSISTTM--SAAFVAYNDDCFSNAN------------ 79
           GD L  Q+ YV DLL RT +EN  +I + M  S     +  D  S+ +            
Sbjct: 726 GDLLLNQSKYVRDLLSRTNMENCKAIGSPMVSSCKLSKFGTDSMSDPSLYRSTVGALQYA 785

Query: 80  -------GFGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHG----AACCTVDVSLHAY 139
                   F VNKV QFM NP   HWKAV+ +LRY +   +HG     +  +   SL  Y
Sbjct: 786 TLTRPDISFSVNKVCQFMANPLETHWKAVKRILRYLKGTSNHGLLLHPSSSSPPFSLRTY 845

Query: 140 VDVDWASERDDCKTTTGFATFFCGNLA 141
            D DWA+++DD ++T+G   +F  NL+
Sbjct: 846 SDADWATDQDDRRSTSGSCIYFGPNLS 872

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022153320.14.7e-1436.49uncharacterized protein LOC111020844 [Momordica charantia][more]
XP_016902754.12.6e-1239.37PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo][more]
KAA0046194.12.6e-1231.74putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14161.1 putative m... [more]
KAA0045109.12.6e-1233.11putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23629.1 putative m... [more]
XP_022157873.13.4e-1250.65uncharacterized protein LOC111024485 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Q9ZT941.1e-0830.88Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW21.2e-0729.20Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A6J1DGH42.3e-1436.49uncharacterized protein LOC111020844 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A1S4E3F11.3e-1239.37uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=... [more]
A0A6J1DUJ41.6e-1250.65uncharacterized protein LOC111024485 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A1S4E5984.8e-1232.43uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=... [more]
A0A2Z6M4W51.4e-1135.37Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subt... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr023755.1Sgr023755.1mRNA