Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATTCCGGTTAATGTGGGTGACATAGTCATTTTTGGCGGCTGCCCCACTGAAGTAAACGAAGTCATCAAACCACCCCATACAAATTTTCATTAAAGGACCTGAAAACTCTCAATTACTTTCTCGGTGTGGAAATTATCAAGTGCTCAGGGTGATCAACTTCCACCTCAAACGGATTACGTTTTTGACTTGTTGAAGAGGACTACTATAGAAAATGCATGTTCCATTTCTACAACCATGTCAGCGGCCTTTGTTGCCTATAATGACGATTGCTTTTCTAATGCTAATGTAAAGTGGAGGCGATGCAATATGCTAATTTCACACGTTCAGATAGGGTTTTGGTGTCAACAAAGTCGGCCAATTTATGCATAATCCTCCAGCGTGTCATTGGAAAGCTGTCGAGGAAGTTTTGCGTTATCAGAGGTTTCTCGACCATGGTGCGGCTTGCTGCACAGTTGATGTATCACTTCATGCCTATGTGGATGTTGATTGGGCTTCTGAACGAGATGATTGCAAGACAACTACTGGTTTTGCTACATTTTTTTGTGGAAATCTTGCCACTTAG
mRNA sequence
ATGTACATTCCGGTTAATGTGGGTGACATAGTCATTTTTGGCGGCTGCCCCACTGAAGGTGATCAACTTCCACCTCAAACGGATTACGTTTTTGACTTGTTGAAGAGGACTACTATAGAAAATGCATGTTCCATTTCTACAACCATGTCAGCGGCCTTTGTTGCCTATAATGACGATTGCTTTTCTAATGCTAATGGTTTTGGTGTCAACAAAGTCGGCCAATTTATGCATAATCCTCCAGCGTGTCATTGGAAAGCTGTCGAGGAAGTTTTGCGTTATCAGAGGTTTCTCGACCATGGTGCGGCTTGCTGCACAGTTGATGTATCACTTCATGCCTATGTGGATGTTGATTGGGCTTCTGAACGAGATGATTGCAAGACAACTACTGGTTTTGCTACATTTTTTTGTGGAAATCTTGCCACTTAG
Coding sequence (CDS)
ATGTACATTCCGGTTAATGTGGGTGACATAGTCATTTTTGGCGGCTGCCCCACTGAAGGTGATCAACTTCCACCTCAAACGGATTACGTTTTTGACTTGTTGAAGAGGACTACTATAGAAAATGCATGTTCCATTTCTACAACCATGTCAGCGGCCTTTGTTGCCTATAATGACGATTGCTTTTCTAATGCTAATGGTTTTGGTGTCAACAAAGTCGGCCAATTTATGCATAATCCTCCAGCGTGTCATTGGAAAGCTGTCGAGGAAGTTTTGCGTTATCAGAGGTTTCTCGACCATGGTGCGGCTTGCTGCACAGTTGATGTATCACTTCATGCCTATGTGGATGTTGATTGGGCTTCTGAACGAGATGATTGCAAGACAACTACTGGTTTTGCTACATTTTTTTGTGGAAATCTTGCCACTTAG
Protein sequence
MYIPVNVGDIVIFGGCPTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAAFVAYNDDCFSNANGFGVNKVGQFMHNPPACHWKAVEEVLRYQRFLDHGAACCTVDVSLHAYVDVDWASERDDCKTTTGFATFFCGNLAT
Homology
BLAST of Sgr023755 vs. NCBI nr
Match:
XP_022153320.1 (uncharacterized protein LOC111020844 [Momordica charantia])
HSP 1 Score: 88.6 bits (218), Expect = 4.7e-14
Identity = 54/148 (36.49%), Postives = 73/148 (49.32%), Query Frame = 0
Query: 17 PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAA--FVAYNDDCFSNAN--------- 76
P +G Q+ Y+ DLL + + A +IST M + A D F + +
Sbjct: 170 PPQGGLFLSQSKYIMDLLVKARMAEAHAISTPMVSGPLLSARQGDKFVDVHQYRGIVGAL 229
Query: 77 ----------GFGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHGAACC-TVDVSLHAY 136
F +NK Q MH+P HW+ V+ +LRY + +DHG SLH Y
Sbjct: 230 QYATLTRPNISFSINKACQSMHSPTLVHWQLVKRILRYLKGIVDHGLLLSKPSQFSLHGY 289
Query: 137 VDVDWASERDDCKTTTGFATFFCGNLAT 142
VDVDWAS+ DD K+T+GF FF GNL T
Sbjct: 290 VDVDWASDPDDRKSTSGFCVFFGGNLVT 317
BLAST of Sgr023755 vs. NCBI nr
Match:
XP_016902754.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])
HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 0
Query: 17 PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAAFVAYNDDCFSNANGFGVNKVGQFM 76
PT G Q+ Y+ DLL+RT + A IST M A + VNK QFM
Sbjct: 38 PTNGGLFLSQSKYITDLLQRTKMLEAKPISTPMYATLT-------HPEISYSVNKACQFM 97
Query: 77 HNPPACHWKAVEEVLRYQR-FLDHGAACCTVD-VSLHAYVDVDWASERDDCKTTTGFATF 136
H P HW+ V+ +LRY + L HG D +SL + D DWAS+ DD K+T+GF +
Sbjct: 98 HTPKHTHWQLVKRILRYLKGVLYHGLWFRKSDNMSLVGFADADWASDPDDRKSTSGFYVY 157
Query: 137 FCGNLAT 142
F NL +
Sbjct: 158 FGNNLVS 157
BLAST of Sgr023755 vs. NCBI nr
Match:
KAA0046194.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14161.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 53/167 (31.74%), Postives = 82/167 (49.10%), Query Frame = 0
Query: 6 NVGDIVIFGGC----PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAAFV--AYNDD 65
++GD+ F G PT G Q Y+ DLL++T I +A IST M + + A+ +
Sbjct: 23 DLGDLSYFLGIEVSYPTNGGMFLSQAKYITDLLQKTKIFDAKPISTPMVSGQLVSAHQGE 82
Query: 66 CFSNAN-----------------------GFGVNKVGQFMHNPPACHWKAVEEVLRYQR- 125
F + + VNK QFMH+P HW+ V+ +LRY +
Sbjct: 83 NFHYIHLYRSTVGALKYALQYATVTHPEISYSVNKACQFMHSPKLIHWQLVKRILRYLKG 142
Query: 126 FLDHGA-ACCTVDVSLHAYVDVDWASERDDCKTTTGFATFFCGNLAT 142
L HG C+ ++S+ +VD DWAS+ DD K+T+G+ +F L +
Sbjct: 143 SLSHGLWLQCSTNLSIVGFVDADWASDPDDMKSTSGYCVYFGNTLVS 189
BLAST of Sgr023755 vs. NCBI nr
Match:
KAA0045109.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23629.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = 0
Query: 17 PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAAFV--AYNDDCFSNAN--------- 76
PT G Q Y+ DLL++T + +A IST M + + A+ + F + +
Sbjct: 38 PTNGGMFLSQAKYITDLLQKTKMFDAKPISTPMVSGQLVSAHQGENFHDIHLYRRTVGAL 97
Query: 77 ----------GFGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHGA-ACCTVDVSLHAY 136
+ VNK QFMH+P HW+ V+ +LRY + L HG C+ ++SL +
Sbjct: 98 QYATLTHPEISYSVNKACQFMHSPKLIHWQLVKRILRYLKGSLSHGLWLRCSTNLSLVGF 157
Query: 137 VDVDWASERDDCKTTTGFATFFCGNLAT 142
D DWAS+ DD K+T+G+ +F NL +
Sbjct: 158 ADADWASDPDDRKSTSGYCVYFGNNLVS 185
BLAST of Sgr023755 vs. NCBI nr
Match:
XP_022157873.1 (uncharacterized protein LOC111024485 [Momordica charantia])
HSP 1 Score: 82.4 bits (202), Expect = 3.4e-12
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0
Query: 67 FGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHGAACC-TVDVSLHAYVDVDWASERDD 126
F VNK QFMH+P HW+ V+ +LRY + +DHG + SLH Y D DWAS+ DD
Sbjct: 50 FSVNKACQFMHSPTLIHWQLVKRILRYLKGTIDHGLFLAKPITFSLHGYADEDWASDPDD 109
Query: 127 CKTTTGFATFFCGNLAT 142
K+T+GF FF GNL T
Sbjct: 110 RKSTSGFCVFFGGNLVT 126
BLAST of Sgr023755 vs. ExPASy Swiss-Prot
Match:
Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)
HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 42/136 (30.88%), Postives = 60/136 (44.12%), Query Frame = 0
Query: 26 QTDYVFDLLKRTTIENACSISTTM-------------------------SAAFVAYNDDC 85
Q Y DLL RT + A ++T M S ++A+
Sbjct: 1185 QRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPD 1244
Query: 86 FSNANGFGVNKVGQFMHNPPACHWKAVEEVLRYQRFL-DHGAACCTVD-VSLHAYVDVDW 135
S + VN++ Q+MH P HW A++ VLRY DHG + +SLHAY D DW
Sbjct: 1245 LS----YAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADW 1304
BLAST of Sgr023755 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 1.2e-07
Identity = 40/137 (29.20%), Postives = 60/137 (43.80%), Query Frame = 0
Query: 26 QTDYVFDLLKRTTIENACSISTTM--SAAFVAYNDDCFSNAN------------------ 85
Q Y+ DLL RT + A ++T M S Y+ ++
Sbjct: 1202 QRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPD 1261
Query: 86 -GFGVNKVGQFMHNPPACHWKAVEEVLRYQR-------FLDHGAACCTVDVSLHAYVDVD 135
+ VN++ QFMH P H +A++ +LRY FL G +SLHAY D D
Sbjct: 1262 ISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNT-----LSLHAYSDAD 1321
BLAST of Sgr023755 vs. ExPASy TrEMBL
Match:
A0A6J1DGH4 (uncharacterized protein LOC111020844 OS=Momordica charantia OX=3673 GN=LOC111020844 PE=4 SV=1)
HSP 1 Score: 88.6 bits (218), Expect = 2.3e-14
Identity = 54/148 (36.49%), Postives = 73/148 (49.32%), Query Frame = 0
Query: 17 PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAA--FVAYNDDCFSNAN--------- 76
P +G Q+ Y+ DLL + + A +IST M + A D F + +
Sbjct: 170 PPQGGLFLSQSKYIMDLLVKARMAEAHAISTPMVSGPLLSARQGDKFVDVHQYRGIVGAL 229
Query: 77 ----------GFGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHGAACC-TVDVSLHAY 136
F +NK Q MH+P HW+ V+ +LRY + +DHG SLH Y
Sbjct: 230 QYATLTRPNISFSINKACQSMHSPTLVHWQLVKRILRYLKGIVDHGLLLSKPSQFSLHGY 289
Query: 137 VDVDWASERDDCKTTTGFATFFCGNLAT 142
VDVDWAS+ DD K+T+GF FF GNL T
Sbjct: 290 VDVDWASDPDDRKSTSGFCVFFGGNLVT 317
BLAST of Sgr023755 vs. ExPASy TrEMBL
Match:
A0A1S4E3F1 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107991866 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 0
Query: 17 PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAAFVAYNDDCFSNANGFGVNKVGQFM 76
PT G Q+ Y+ DLL+RT + A IST M A + VNK QFM
Sbjct: 38 PTNGGLFLSQSKYITDLLQRTKMLEAKPISTPMYATLT-------HPEISYSVNKACQFM 97
Query: 77 HNPPACHWKAVEEVLRYQR-FLDHGAACCTVD-VSLHAYVDVDWASERDDCKTTTGFATF 136
H P HW+ V+ +LRY + L HG D +SL + D DWAS+ DD K+T+GF +
Sbjct: 98 HTPKHTHWQLVKRILRYLKGVLYHGLWFRKSDNMSLVGFADADWASDPDDRKSTSGFYVY 157
Query: 137 FCGNLAT 142
F NL +
Sbjct: 158 FGNNLVS 157
BLAST of Sgr023755 vs. ExPASy TrEMBL
Match:
A0A6J1DUJ4 (uncharacterized protein LOC111024485 OS=Momordica charantia OX=3673 GN=LOC111024485 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0
Query: 67 FGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHGAACC-TVDVSLHAYVDVDWASERDD 126
F VNK QFMH+P HW+ V+ +LRY + +DHG + SLH Y D DWAS+ DD
Sbjct: 50 FSVNKACQFMHSPTLIHWQLVKRILRYLKGTIDHGLFLAKPITFSLHGYADEDWASDPDD 109
Query: 127 CKTTTGFATFFCGNLAT 142
K+T+GF FF GNL T
Sbjct: 110 RKSTSGFCVFFGGNLVT 126
BLAST of Sgr023755 vs. ExPASy TrEMBL
Match:
A0A1S4E598 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107992166 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 4.8e-12
Identity = 48/148 (32.43%), Postives = 77/148 (52.03%), Query Frame = 0
Query: 17 PTEGDQLPPQTDYVFDLLKRTTIENACSISTTMSAA--FVAYNDDCFSNAN--------- 76
PT G Q+ Y+ DLL+RT + +A IST+M + A+ + F + +
Sbjct: 38 PTNGGLFLSQSKYITDLLQRTKMLDAKPISTSMVSGPLLSAFQGELFHDVHLYRSIVGAL 97
Query: 77 ----------GFGVNKVGQFMHNPPACHWKAVEEVLRYQRFLDHGAACCTV--DVSLHAY 136
+ VNK QF+H P HW+ V+++LRY + + + A + ++SL +
Sbjct: 98 QYATLTHPEISYSVNKACQFIHTPKHTHWQLVKKILRYLKGVLYHALWLSKSDNMSLDGF 157
Query: 137 VDVDWASERDDCKTTTGFATFFCGNLAT 142
VD DWAS+ DD K+T+GF +F NL +
Sbjct: 158 VDADWASDPDDRKSTSGFCVYFGNNLVS 185
BLAST of Sgr023755 vs. ExPASy TrEMBL
Match:
A0A2Z6M4W5 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_108020 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 52/147 (35.37%), Postives = 73/147 (49.66%), Query Frame = 0
Query: 20 GDQLPPQTDYVFDLLKRTTIENACSISTTM--SAAFVAYNDDCFSNAN------------ 79
GD L Q+ YV DLL RT +EN +I + M S + D S+ +
Sbjct: 726 GDLLLNQSKYVRDLLSRTNMENCKAIGSPMVSSCKLSKFGTDSMSDPSLYRSTVGALQYA 785
Query: 80 -------GFGVNKVGQFMHNPPACHWKAVEEVLRYQR-FLDHG----AACCTVDVSLHAY 139
F VNKV QFM NP HWKAV+ +LRY + +HG + + SL Y
Sbjct: 786 TLTRPDISFSVNKVCQFMANPLETHWKAVKRILRYLKGTSNHGLLLHPSSSSPPFSLRTY 845
Query: 140 VDVDWASERDDCKTTTGFATFFCGNLA 141
D DWA+++DD ++T+G +F NL+
Sbjct: 846 SDADWATDQDDRRSTSGSCIYFGPNLS 872
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022153320.1 | 4.7e-14 | 36.49 | uncharacterized protein LOC111020844 [Momordica charantia] | [more] |
XP_016902754.1 | 2.6e-12 | 39.37 | PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo] | [more] |
KAA0046194.1 | 2.6e-12 | 31.74 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14161.1 putative m... | [more] |
KAA0045109.1 | 2.6e-12 | 33.11 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23629.1 putative m... | [more] |
XP_022157873.1 | 3.4e-12 | 50.65 | uncharacterized protein LOC111024485 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Q9ZT94 | 1.1e-08 | 30.88 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
Q94HW2 | 1.2e-07 | 29.20 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DGH4 | 2.3e-14 | 36.49 | uncharacterized protein LOC111020844 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
A0A1S4E3F1 | 1.3e-12 | 39.37 | uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=... | [more] |
A0A6J1DUJ4 | 1.6e-12 | 50.65 | uncharacterized protein LOC111024485 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A1S4E598 | 4.8e-12 | 32.43 | uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=... | [more] |
A0A2Z6M4W5 | 1.4e-11 | 35.37 | Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subt... | [more] |
Match Name | E-value | Identity | Description | |