Sgr023217 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr023217
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Locationtig00000892: 1099471 .. 1099779 (-)
RNA-Seq ExpressionSgr023217
SyntenySgr023217
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCATGGCTATGACAGCCTCCTTCCTCCCCGTCACGGCCAAGCACCCCTCCGCCGTCGCCCGGAGAGGCATCATCGTCGCCAAGGCCTCCACCTCCAGTACTGATGGGTCCAAGGCCAACTTGGAAGTGAAGAACATCAAGCAGGGACGGAGGGAGTTGGTGGCGGCGGCCGTCACGGTGGCTGCGGCCAGCTTGGCGAAGGTGGCCATGGCGGACGAGCCGAAGCGCGGCACTGCAGAAGCCAAGCAGAAGTATGCGCCGGTGTGCGTCACAATGCCCACTGCAAGCATCTGTCGCAAGTGA

mRNA sequence

ATGGCCTCCATGGCTATGACAGCCTCCTTCCTCCCCGTCACGGCCAAGCACCCCTCCGCCGTCGCCCGGAGAGGCATCATCGTCGCCAAGGCCTCCACCTCCAGTACTGATGGGTCCAAGGCCAACTTGGAAGTGAAGAACATCAAGCAGGGACGGAGGGAGTTGGTGGCGGCGGCCGTCACGGTGGCTGCGGCCAGCTTGGCGAAGGTGGCCATGGCGGACGAGCCGAAGCGCGGCACTGCAGAAGCCAAGCAGAAGTATGCGCCGGTGTGCGTCACAATGCCCACTGCAAGCATCTGTCGCAAGTGA

Coding sequence (CDS)

ATGGCCTCCATGGCTATGACAGCCTCCTTCCTCCCCGTCACGGCCAAGCACCCCTCCGCCGTCGCCCGGAGAGGCATCATCGTCGCCAAGGCCTCCACCTCCAGTACTGATGGGTCCAAGGCCAACTTGGAAGTGAAGAACATCAAGCAGGGACGGAGGGAGTTGGTGGCGGCGGCCGTCACGGTGGCTGCGGCCAGCTTGGCGAAGGTGGCCATGGCGGACGAGCCGAAGCGCGGCACTGCAGAAGCCAAGCAGAAGTATGCGCCGGTGTGCGTCACAATGCCCACTGCAAGCATCTGTCGCAAGTGA

Protein sequence

MASMAMTASFLPVTAKHPSAVARRGIIVAKASTSSTDGSKANLEVKNIKQGRRELVAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICRK
Homology
BLAST of Sgr023217 vs. NCBI nr
Match: XP_038901593.1 (photosystem II 5 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 3.8e-29
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 1   MASMAMTASFLPVTA-KHPSAVARRGIIVAKASTSSTDGSKANLEVKNIK----QGRREL 60
           MASMAMTASFLP TA K PS  ARR ++VAKASTSS D S  NLE+KN+K    QGRREL
Sbjct: 1   MASMAMTASFLPATANKQPSTAARRALVVAKASTSS-DASNVNLEIKNVKVENRQGRREL 60

Query: 61  VAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICRK 103
           VAAAVTVAAA+LAK AMADEP RG+ EAKQKYAP+CVTMPTA ICRK
Sbjct: 61  VAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 106

BLAST of Sgr023217 vs. NCBI nr
Match: XP_022148791.1 (photosystem II 5 kDa protein, chloroplastic [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-28
Identity = 78/106 (73.58%), Postives = 90/106 (84.91%), Query Frame = 0

Query: 1   MASMAMTASFLPVTAKHPSAVARRGIIVAKASTSSTDGSKANLEV-KNIK----QGRREL 60
           MAS A+ ASFLP+TAKHPSA  RR +IVAKAS ++ D SK NLE+ ++++    QGRREL
Sbjct: 1   MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRREL 60

Query: 61  VAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICR 102
           VAAAVTVAAA+LAK AMADEPKRG+AEAKQKYAPVCVTMPTA ICR
Sbjct: 61  VAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR 106

BLAST of Sgr023217 vs. NCBI nr
Match: XP_008449703.1 (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA0041421.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa] >TYJ96132.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 3.2e-28
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 1   MASMAMTASFLPVTA-KHPSAVARRGIIVAKASTSSTDGSKANLEVKNIK----QGRREL 60
           MASMAMTASFLP TA K PSA  RR +IVAKASTS+ + S  NLEVKN+K    QGRREL
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSN-ETSNVNLEVKNVKVESRQGRREL 112

Query: 61  VAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICRK 103
           VAAAVTVAAA+LAK AMADEP RG+ EAKQKYAP+CVTMPTA ICRK
Sbjct: 113 VAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 158

BLAST of Sgr023217 vs. NCBI nr
Match: XP_004143237.1 (photosystem II 5 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 5.4e-28
Identity = 81/107 (75.70%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 1   MASMAMTASFLPVTA-KHPSAVARRGIIVAKASTSSTDGSKANLEVKNIK----QGRREL 60
           MASMAMTASFLP TA K PS+ ARR +IVAKASTS+   S  N+EVKN+K    QGRREL
Sbjct: 1   MASMAMTASFLPTTATKQPSSTARRPLIVAKASTSN-QASNVNMEVKNVKVESRQGRREL 60

Query: 61  VAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICRK 103
           VAAAVTVAAA+LAK AMADEP RG+ EAKQKYAP+CVTMPTA ICRK
Sbjct: 61  VAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 106

BLAST of Sgr023217 vs. NCBI nr
Match: XP_022944588.1 (photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 78/110 (70.91%), Postives = 87/110 (79.09%), Query Frame = 0

Query: 1   MASMAMTASFLPVTAKHPS-AVARRGIIVAKASTSST---DGSKANLEVKNIK----QGR 60
           MASM++TASFLP TA  PS A ARR + V KASTS+      S ANLE+KN+K    QGR
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60

Query: 61  RELVAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICRK 103
           RELVAAAVTVAAA+ AK AMADEP RG+AEAKQKYAP+CVTMPTA ICRK
Sbjct: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 110

BLAST of Sgr023217 vs. ExPASy Swiss-Prot
Match: Q39195 (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBT PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-16
Identity = 60/105 (57.14%), Postives = 67/105 (63.81%), Query Frame = 0

Query: 1   MASMAMTASFLPVTAKHPSAVARRGIIVAKASTSSTDGSKANLEVKNIKQG--RRELVAA 60
           MASM MTA+F P  AK PSA   R + V +ASTS    S   LEVK       RR+L+  
Sbjct: 1   MASMTMTATFFPAVAKVPSATGGRRLSVVRASTSDNTPS---LEVKEQSSTTMRRDLMFT 60

Query: 61  AVTVAAASLAKVAMA--DEPKRGTAEAKQKYAPVCVTMPTASICR 102
           A   A  SLAKVAMA  +EPKRGT  AK+KYA VCVTMPTA ICR
Sbjct: 61  AAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

BLAST of Sgr023217 vs. ExPASy Swiss-Prot
Match: B3EWI4 (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.8e-13
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = 0

Query: 1   MASMAMTASFL----PVTAKHPSAVARRGIIVAKASTSSTDGSKANLEVKNIKQGRRELV 60
           MAS+ M +SFL       AK PSA  RRG+++ KA     +    +   ++   GRREL 
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPSA-NRRGVVMVKAMHEGENNVVISKNEESKNSGRRELF 60

Query: 61  AAAVTVAAASLAKVAMAD-EPKRGTAEAKQKYAPVCVTMPTASICR 102
            A    AA S+AK AMAD EPKRGT EAK+KY+ VCVT PTA ICR
Sbjct: 61  FAMAAAAACSVAKTAMADEEPKRGTPEAKKKYSSVCVTNPTARICR 105

BLAST of Sgr023217 vs. ExPASy Swiss-Prot
Match: P31336 (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSBT PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-11
Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = 0

Query: 1   MASMAMTASFLPVT--AKHPSAVARRGIIVAKAST-SSTDGSKANLEVKNI-KQGRRELV 60
           MAS+ MT SFL  T   K    + +R ++VA A+  +  +  + + E K     GRRE++
Sbjct: 1   MASITMTTSFLSTTNLTKGSPRITQRRLVVANAAKGAQVESVQMSGERKTEGNNGRREMM 60

Query: 61  AAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICR 102
            AA   A  S+A VA A EPKRG+AEAK+ YAPVCVTMPTA ICR
Sbjct: 61  FAAAAAAICSVAGVATA-EPKRGSAEAKKAYAPVCVTMPTARICR 104

BLAST of Sgr023217 vs. ExPASy TrEMBL
Match: A0A6J1D6G0 (photosystem II 5 kDa protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017359 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 78/106 (73.58%), Postives = 90/106 (84.91%), Query Frame = 0

Query: 1   MASMAMTASFLPVTAKHPSAVARRGIIVAKASTSSTDGSKANLEV-KNIK----QGRREL 60
           MAS A+ ASFLP+TAKHPSA  RR +IVAKAS ++ D SK NLE+ ++++    QGRREL
Sbjct: 1   MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRREL 60

Query: 61  VAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICR 102
           VAAAVTVAAA+LAK AMADEPKRG+AEAKQKYAPVCVTMPTA ICR
Sbjct: 61  VAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR 106

BLAST of Sgr023217 vs. ExPASy TrEMBL
Match: A0A5A7TID9 (Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00980 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 1   MASMAMTASFLPVTA-KHPSAVARRGIIVAKASTSSTDGSKANLEVKNIK----QGRREL 60
           MASMAMTASFLP TA K PSA  RR +IVAKASTS+ + S  NLEVKN+K    QGRREL
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSN-ETSNVNLEVKNVKVESRQGRREL 112

Query: 61  VAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICRK 103
           VAAAVTVAAA+LAK AMADEP RG+ EAKQKYAP+CVTMPTA ICRK
Sbjct: 113 VAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 158

BLAST of Sgr023217 vs. ExPASy TrEMBL
Match: A0A1S3BML8 (photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491503 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 1   MASMAMTASFLPVTA-KHPSAVARRGIIVAKASTSSTDGSKANLEVKNIK----QGRREL 60
           MASMAMTASFLP TA K PSA  RR +IVAKASTS+ + S  NLEVKN+K    QGRREL
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSN-ETSNVNLEVKNVKVESRQGRREL 112

Query: 61  VAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICRK 103
           VAAAVTVAAA+LAK AMADEP RG+ EAKQKYAP+CVTMPTA ICRK
Sbjct: 113 VAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 158

BLAST of Sgr023217 vs. ExPASy TrEMBL
Match: A0A0A0KIB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439930 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.6e-28
Identity = 81/107 (75.70%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 1   MASMAMTASFLPVTA-KHPSAVARRGIIVAKASTSSTDGSKANLEVKNIK----QGRREL 60
           MASMAMTASFLP TA K PS+ ARR +IVAKASTS+   S  N+EVKN+K    QGRREL
Sbjct: 1   MASMAMTASFLPTTATKQPSSTARRPLIVAKASTSN-QASNVNMEVKNVKVESRQGRREL 60

Query: 61  VAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICRK 103
           VAAAVTVAAA+LAK AMADEP RG+ EAKQKYAP+CVTMPTA ICRK
Sbjct: 61  VAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 106

BLAST of Sgr023217 vs. ExPASy TrEMBL
Match: A0A6J1J874 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111484352 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.5e-27
Identity = 78/110 (70.91%), Postives = 87/110 (79.09%), Query Frame = 0

Query: 1   MASMAMTASFLPVTAKHPS-AVARRGIIVAKASTSST---DGSKANLEVKNIK----QGR 60
           MASM++TASFLP TA  PS A ARR + V KASTS+      S ANLE+KN+K    QGR
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60

Query: 61  RELVAAAVTVAAASLAKVAMADEPKRGTAEAKQKYAPVCVTMPTASICRK 103
           RELVAAAVTVAAA+ AK AMADEP RG+AEAKQKYAP+CVTMPTA ICRK
Sbjct: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 110

BLAST of Sgr023217 vs. TAIR 10
Match: AT1G51400.1 (Photosystem II 5 kD protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-18
Identity = 59/105 (56.19%), Postives = 69/105 (65.71%), Query Frame = 0

Query: 1   MASMAMTASFLPVTAKHP---SAVARRGIIVAKASTSSTDGSKANLEVKNIKQGRRELVA 60
           MASM MT+SFLP  +  P   S+ +RR + V KAS S    S  N + +   + RR+LV 
Sbjct: 1   MASMTMTSSFLPTVSNLPANISSNSRRSLTVVKASGSENTTSLENKKQEQSMKMRRDLVF 60

Query: 61  AAVTVAAASLAKVAMA-DEPKRGTAEAKQKYAPVCVTMPTASICR 102
            A   A  SLAKVAMA DEPKRGT  AK+KYAPVCVTMPTA ICR
Sbjct: 61  TAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAKICR 105

BLAST of Sgr023217 vs. TAIR 10
Match: AT3G21055.1 (photosystem II subunit T )

HSP 1 Score: 87.0 bits (214), Expect = 9.3e-18
Identity = 60/105 (57.14%), Postives = 67/105 (63.81%), Query Frame = 0

Query: 1   MASMAMTASFLPVTAKHPSAVARRGIIVAKASTSSTDGSKANLEVKNIKQG--RRELVAA 60
           MASM MTA+F P  AK PSA   R + V +ASTS    S   LEVK       RR+L+  
Sbjct: 1   MASMTMTATFFPAVAKVPSATGGRRLSVVRASTSDNTPS---LEVKEQSSTTMRRDLMFT 60

Query: 61  AVTVAAASLAKVAMA--DEPKRGTAEAKQKYAPVCVTMPTASICR 102
           A   A  SLAKVAMA  +EPKRGT  AK+KYA VCVTMPTA ICR
Sbjct: 61  AAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038901593.13.8e-2976.64photosystem II 5 kDa protein, chloroplastic [Benincasa hispida][more]
XP_022148791.12.4e-2873.58photosystem II 5 kDa protein, chloroplastic [Momordica charantia][more]
XP_008449703.13.2e-2876.64PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA004142... [more]
XP_004143237.15.4e-2875.70photosystem II 5 kDa protein, chloroplastic [Cucumis sativus][more]
XP_022944588.11.8e-2670.91photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1... [more]
Match NameE-valueIdentityDescription
Q391951.3e-1657.14Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P... [more]
B3EWI48.8e-1350.00Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1[more]
P313363.7e-1148.57Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSB... [more]
Match NameE-valueIdentityDescription
A0A6J1D6G01.2e-2873.58photosystem II 5 kDa protein, chloroplastic OS=Momordica charantia OX=3673 GN=LO... [more]
A0A5A7TID91.5e-2876.64Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3BML81.5e-2876.64photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491... [more]
A0A0A0KIB22.6e-2875.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439930 PE=4 SV=1[more]
A0A6J1J8748.5e-2770.91photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
Match NameE-valueIdentityDescription
AT1G51400.11.1e-1856.19Photosystem II 5 kD protein [more]
AT3G21055.19.3e-1857.14photosystem II subunit T [more]
InterPro
Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34940:SF4PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTICcoord: 1..102
IPR040296Photosystem II 5kDa protein, chloroplasticPANTHERPTHR34940PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTICcoord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr023217.1Sgr023217.1mRNA