Sgr022790 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr022790
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	29 kDa ribonucleoprotein, chloroplastic-like
Location	tig00000589: 1795263 .. 1796515 (-)
RNA-Seq Expression	Sgr022790
Synteny	Sgr022790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCCGCTGCGACTTCCCTTGCGCTCTCATCTTTAACCCCCAAAACCCTATCCCTTTCGAACCCTAGACTCAAACTTTTCTCTCTCAATCCATCTTCCATCCGCCTTCTTTCAAATCCCATTTCCATTTCTGCTTTCGTTCTTCGTTCTGATAGAGCTTCTCCGGCCTTATCCTCTCGGTTCACTAGAAATGTCGCCGTCTCGTCCGATTTCGACCAGGAGGAAGACGTCCTTGGGGATGATGGAGACGATTCTAGCTACGCTCCTGACCAAACTCTTCGTCGGAAATCTTCCTTTCGGCGTCGACAGTGCCCAGCTCGCCGGCTTGTTCGAGAGCGCTGGAGAAGTTGAAAGGGTCGAGGTACTCTGCCATTCTCGATTTTACCCTTTCCTGTTTCGAAGTTTTACTCTAGGTTGCTTTTGACCATGAAAGGGACTGATTGGAACTGTTACTTTCTCAAGCCTTGTTAGTATCACAAGTTCCTCAGTTCTCTCGAGAGATCCATTTGCCCTAATTTCTATATTGGGGCTATTTTTTAAGGTAATTTACGACAAGACGACAGGACGAAGCAGGGGATTTGGTTTTGTCACGATGTCGAATGCTGATGAGTCGAAGTAGCTGCTCAACAATTTAATGGCTATGTAAGTGACTGTACTCCATCCATAACCAAGTTAATGCTCTGCAATATTGTTTTTGGGTTCTACTTCACTTACTCCTTGGAATTCAATTGTTGTAACTGTAACCCAGAAAATTAGAAAGTTATAATACCTCTTTTCTATGATATTAGTGCCCTCAAGTTTTAAACATCAAATTTTGGACGAACATATGTTTATATTGTCGTTAGAGAGATGATTTACTCGATCTTATTTTGTGGGGAAAAATACCTGTAGAGCTTATCTGCTTCCATGGTCTTTCTTCAGGCAGAATTTTGAAGCTAAAAGTTCCTTGATATGCCTTTGTGATCCAGTGACATACTATCATCTTTCATTTTATATCAACAGATTTATTGCATTTGCTTCTAATGATTCCTGGTTATAACATCTTACAGGAACTCGAGGGTAGAGCATTGAGGGTAAATTATGGACCCCCTCCACCAAAAAGGGATGATTTCTCTTTCAGAGGTTCCAGAAATGCTTCAAATTTTGATAACCCCAACCGTATTCATGTGGGTAACCTTGCTTGGGGTGTTGATGATCTTGCACTTGAGACCATGTTTAGGGACATGGAAATGTTGTCGAAGCAAAAGTAG

mRNA sequence

ATGTCTGCCGCTGCGACTTCCCTTGCGCTCTCATCTTTAACCCCCAAAACCCTATCCCTTTCGAACCCTAGACTCAAACTTTTCTCTCTCAATCCATCTTCCATCCGCCTTCTTTCAAATCCCATTTCCATTTCTGCTTTCGTTCTTCGTTCTGATAGAGCTTCTCCGGCCTTATCCTCTCGGTTCACTAGAAATGTCGCCGTCTCGTCCGATTTCGACCAGGAGGAAGACGTCCTTGGGGATGATGGAGACGATTCTAGCTACGCTCCTGACCAAACTCTTCGTCGGAAATCTTCCTTTCGGCGTCGACAGTGCCCAGCTCGCCGGCTTGTTCGAGAGCGCTGGAGAAATTTATTGCATTTGCTTCTAATGATTCCTGGTTATAACATCTTACAGGAACTCGAGGGTAGAGCATTGAGGGTAAATTATGGACCCCCTCCACCAAAAAGGGATGATTTCTCTTTCAGAGGTTCCAGAAATGCTTCAAATTTTGATAACCCCAACCGTATTCATGTGGGTAACCTTGCTTGGGGTGTTGATGATCTTGCACTTGAGACCATGTTTAGGGACATGGAAATGTTGTCGAAGCAAAAGTAG

Coding sequence (CDS)

ATGTCTGCCGCTGCGACTTCCCTTGCGCTCTCATCTTTAACCCCCAAAACCCTATCCCTTTCGAACCCTAGACTCAAACTTTTCTCTCTCAATCCATCTTCCATCCGCCTTCTTTCAAATCCCATTTCCATTTCTGCTTTCGTTCTTCGTTCTGATAGAGCTTCTCCGGCCTTATCCTCTCGGTTCACTAGAAATGTCGCCGTCTCGTCCGATTTCGACCAGGAGGAAGACGTCCTTGGGGATGATGGAGACGATTCTAGCTACGCTCCTGACCAAACTCTTCGTCGGAAATCTTCCTTTCGGCGTCGACAGTGCCCAGCTCGCCGGCTTGTTCGAGAGCGCTGGAGAAATTTATTGCATTTGCTTCTAATGATTCCTGGTTATAACATCTTACAGGAACTCGAGGGTAGAGCATTGAGGGTAAATTATGGACCCCCTCCACCAAAAAGGGATGATTTCTCTTTCAGAGGTTCCAGAAATGCTTCAAATTTTGATAACCCCAACCGTATTCATGTGGGTAACCTTGCTTGGGGTGTTGATGATCTTGCACTTGAGACCATGTTTAGGGACATGGAAATGTTGTCGAAGCAAAAGTAG

Protein sequence

MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSSRFTRNVAVSSDFDQEEDVLGDDGDDSSYAPDQTLRRKSSFRRRQCPARRLVRERWRNLLHLLLMIPGYNILQELEGRALRVNYGPPPPKRDDFSFRGSRNASNFDNPNRIHVGNLAWGVDDLALETMFRDMEMLSKQK

Homology

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BLAST of Sgr022790 vs. NCBI nr
Match: XP_022144753.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Momordica charantia])

HSP 1 Score: 212.2 bits (539), Expect = 4.0e-51
Identity = 130/215 (60.47%), Postives = 145/215 (67.44%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSS 60
           M+A+ATSLALSSLTPKTLSLSNPR+KLFSLNPSSIRLLSN ISISAF +RSDR SPA SS
Sbjct: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPAFSS 60

Query: 61  RFTRNVAVSSDFDQEEDVLGDDGDDSSYAPDQTL-------------------------R 120
           RF RNVAVSSDFDQEEDVL D GDD SYA D  L                         R
Sbjct: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYASDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120

Query: 121 RKSSFRRRQCPARRLVRERWRNLLHLLLMIPGYNILQELEGRALRVNYGPPPPKRDDFSF 180
            +  + +    +R        N   +      +N   EL+GRALRVNYGPPPPK+D+FSF
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFN-GYELDGRALRVNYGPPPPKKDNFSF 180

Query: 181 RGSRNASNFDNPNRIHVGNLAWGVDDLALETMFRD 191
            GSRNASNF NPNRIHV NLAWGVDD AL  +FR+
Sbjct: 181 TGSRNASNFSNPNRIHVSNLAWGVDDFALGNLFRE 214

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BLAST of Sgr022790 vs. NCBI nr
Match: XP_022935639.1 (29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >XP_022935646.1 29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 201.1 bits (510), Expect = 9.2e-48
Identity = 125/223 (56.05%), Postives = 140/223 (62.78%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSS 60
           M+A+AT L LSSLTPKTLS SNP+ +LFSLNPSSI   SNPISISA VLRSDR SPA  S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFTRNVAVSSDFDQEEDVLGDDGDDSSYAPD-------------------------QTLR 120
           RF RNVAVSSDFDQEEDVL  DGDDSSYAPD                         Q  R
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 RKSSFRRRQCPARRLVRERWRNLLHLLLMIPGYNILQELEGRALRVNYGPPPPKRDDFSF 180
            +  + +    +R        N+         +N   ELEGR LRVNYGPPPPKRDD SF
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFN-GYELEGRPLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASNFDNPNRIHVGNLAWGVDDLALETMFRDMEMLSKQK 199
           R S+NAS FDN N +HV NLAWGVDDL LE +FR+   + K K
Sbjct: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAK 222

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BLAST of Sgr022790 vs. NCBI nr
Match: XP_023538708.1 (29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 2.0e-47
Identity = 125/223 (56.05%), Postives = 139/223 (62.33%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSS 60
           M+A+AT L LSSLTPKTLS SNP+  LFSLNPSSI   SNPISISA VLRSDR SPA  S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFGLFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFTRNVAVSSDFDQEEDVLGDDGDDSSYAPD-------------------------QTLR 120
           RF RNVAVSSDFDQEEDVL  DGDDSSYAPD                         Q  R
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 RKSSFRRRQCPARRLVRERWRNLLHLLLMIPGYNILQELEGRALRVNYGPPPPKRDDFSF 180
            +  + +    +R        N+         +N   ELEGR LRVNYGPPPPKRDD SF
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFN-GYELEGRPLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASNFDNPNRIHVGNLAWGVDDLALETMFRDMEMLSKQK 199
           R S+NAS FDN N +HV NLAWGVDDL LE +FR+   + K K
Sbjct: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAK 222

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BLAST of Sgr022790 vs. NCBI nr
Match: KAG6596475.1 (RNA-binding protein CP29B, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.7 bits (504), Expect = 4.6e-47
Identity = 124/223 (55.61%), Postives = 139/223 (62.33%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSS 60
           M+A+AT L LSSLTPKTLS SNP+ +LFSLNPSSI   SNPISISA VLRSDR SPA  S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFTRNVAVSSDFDQEEDVLGDDGDDSSYAPD-------------------------QTLR 120
           RF  NVAVSSDFDQEEDVL  DGDDSSYAPD                         Q  R
Sbjct: 61  RFVSNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 RKSSFRRRQCPARRLVRERWRNLLHLLLMIPGYNILQELEGRALRVNYGPPPPKRDDFSF 180
            +  + +    +R        N+         +N   ELEGR LRVNYGPPPPKRDD SF
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFN-GYELEGRPLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASNFDNPNRIHVGNLAWGVDDLALETMFRDMEMLSKQK 199
           R S+NAS FDN N +HV NLAWGVDDL LE +FR+   + K K
Sbjct: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAK 222

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BLAST of Sgr022790 vs. NCBI nr
Match: XP_023528633.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-46
Identity = 124/217 (57.14%), Postives = 140/217 (64.52%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSS 60
           MSA+ATS  LS  T KTLSLSNP++KLF LNPSSIRLLSNPIS+S+ VLRS R SP LSS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFTRNVAVSSDFDQEEDVLGDDGDDSSYAPDQTL------------RRKSSFRRR-QCPA 120
           RF RNVAVSSDF+QEE +   DGD+SSYAPD  L            +    F    Q   
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 RRLVRE----RWRNLLHLLL-----------MIPGYNILQELEGRALRVNYGPPPPKRDD 180
             +V +    R R    + +              GY    ELEGR+LRVN GPPPPKRDD
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGY----ELEGRSLRVNNGPPPPKRDD 180

Query: 181 FSFRGSRNASNFDNPNRIHVGNLAWGVDDLALETMFR 190
           FSFRGSRN+SNFD PNR+HV NLAWGVDD ALE  FR
Sbjct: 181 FSFRGSRNSSNFDKPNRVHVSNLAWGVDDHALENFFR 213

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BLAST of Sgr022790 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-19
Identity = 87/223 (39.01%), Postives = 120/223 (53.81%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNP-----RLKLFSLNPSSIRLLSNPISISAFVLRSDRAS 60
           M+++A+SL   SLTP+TL L  P      L  FSL PSS+ L     S+S+       +S
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNL-----SLSS-------SS 60

Query: 61  PALSSRFTRNVAVSSDFDQEEDVL-GDDG--DDSSYAPDQTLRRKSSFRRRQCPARRLVR 120
              SSRF R V + SDFDQ EDV  GDDG  ++ +++PD  +   +        A   + 
Sbjct: 61  SCFSSRFVRKVTL-SDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELF 120

Query: 121 ERWRNLLHLLLMIP-------GYNIL-----------------QELEGRALRVNYGPPPP 180
           ER  N+  + ++         G+  +                  EL+GRALRVN GPPP 
Sbjct: 121 ERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPE 180

Query: 181 KRDDFSFR-GSRNASNFDNPNRIHVGNLAWGVDDLALETMFRD 191
           KR++ SFR GSR   +FD+ NR++VGNLAWGVD  ALET+F +
Sbjct: 181 KRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSE 210

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BLAST of Sgr022790 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-18
Identity = 86/230 (37.39%), Postives = 118/230 (51.30%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNP-----RLKLFSLNPSSIRL-LSNPISISAFVLRSDRA 60
           M+++A+SL   SLTP+TL L  P      L  FSL PSS+ L LS+P             
Sbjct: 1   MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSSLNLSLSSP------------- 60

Query: 61  SPALSSRFTRNVAVSSDFDQEEDVL-GDDG--DDSSYAPDQTLRRKSSFRRRQCPARRLV 120
           S   SSRF R V +  DFDQ EDV  GD+G  ++ +++PD  +   +        A   +
Sbjct: 61  SSCFSSRFVRKVTL-PDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAEL 120

Query: 121 RERWRNLLHLLLMIP-------GYNIL-----------------QELEGRALRVNYGPPP 180
            ER  N+  + ++         G+  +                  EL+GRALRVN GPPP
Sbjct: 121 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 180

Query: 181 PKRDDFSFR-------GSRNASNFDNPNRIHVGNLAWGVDDLALETMFRD 191
            KR++ SFR       GSR   +FD+ NR++VGNLAWGVD  ALET+F +
Sbjct: 181 EKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSE 216

[Close]

BLAST of Sgr022790 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 81/240 (33.75%), Postives = 114/240 (47.50%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPAL-- 60
           M+A+A+SLALSS  PK+L     R       P+S+ LLS  +S   F L SD  S ++  
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSR-------PASVSLLSPSLS---FKLNSDSVSFSIAA 60

Query: 61  -----SSRFTRNVAVSSDFDQEEDVLGD--DGDDSSYAPDQTL-RRKSSFRRRQCPARRL 120
                +SRF RNVA++S+F+ EED   D     + S++ D  L      F        +L
Sbjct: 61  KWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQL 120

Query: 121 ----------------VRERWRNLLHLLL-----------MIPGYNILQELEGRALRVNY 180
                           +  R R    + +              GY    EL+GR LRVN 
Sbjct: 121 FESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGY----ELDGRPLRVNA 180

Query: 181 GPPPPKRDDFSFRGSRNA-------------SNFDNPNRIHVGNLAWGVDDLALETMFRD 191
           GPPPPKR+D   RG R++             S   + NR++VGNL+WGVDD+ALE++F +
Sbjct: 181 GPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSE 226

[Close]

BLAST of Sgr022790 vs. ExPASy Swiss-Prot
Match: Q43349 (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 87/285 (30.53%), Postives = 115/285 (40.35%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRL-LSNPISISAFVLRSDR-ASPA- 60
           MSA+A+S  LS+  PK+L L   R    S+ P S+   L +   +S F   + + +SPA 
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  LSSRFTRNVAVSSDFDQEEDVLGDDGDDS------SYAPDQTL-RRKSSFRRRQCPARRL 120
             SRF RNVAVSSDF+ EED +  DGDDS      S++PD  L     SF        +L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 ----------------VRERWRNLLHLLL-----------MIPGYNILQELEGRALRVNY 180
                           V  R R    + +              GY    E EGR LRVN 
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY----EFEGRPLRVNA 180

Query: 181 GPPPPKRDDFSFRGSR-------------------------------------------- 191
           GPPPPKR++   RG R                                            
Sbjct: 181 GPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGG 240

[Close]

BLAST of Sgr022790 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 133 ELEGRALRVNYGPPPPKRDDFSFRGSRNAS--------------------NFDNPNRIHV 191
           E++GRA+RVN GP P KR++ SF G R  +                    + D+ NR++V
Sbjct: 153 EIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYV 212

[Close]

BLAST of Sgr022790 vs. ExPASy TrEMBL
Match: A0A6J1CU52 (29 kDa ribonucleoprotein A, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111014367 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.9e-51
Identity = 130/215 (60.47%), Postives = 145/215 (67.44%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSS 60
           M+A+ATSLALSSLTPKTLSLSNPR+KLFSLNPSSIRLLSN ISISAF +RSDR SPA SS
Sbjct: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPAFSS 60

Query: 61  RFTRNVAVSSDFDQEEDVLGDDGDDSSYAPDQTL-------------------------R 120
           RF RNVAVSSDFDQEEDVL D GDD SYA D  L                         R
Sbjct: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYASDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120

Query: 121 RKSSFRRRQCPARRLVRERWRNLLHLLLMIPGYNILQELEGRALRVNYGPPPPKRDDFSF 180
            +  + +    +R        N   +      +N   EL+GRALRVNYGPPPPK+D+FSF
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFN-GYELDGRALRVNYGPPPPKKDNFSF 180

Query: 181 RGSRNASNFDNPNRIHVGNLAWGVDDLALETMFRD 191
            GSRNASNF NPNRIHV NLAWGVDD AL  +FR+
Sbjct: 181 TGSRNASNFSNPNRIHVSNLAWGVDDFALGNLFRE 214

[Close]

BLAST of Sgr022790 vs. ExPASy TrEMBL
Match: A0A6J1F601 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442435 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 4.4e-48
Identity = 125/223 (56.05%), Postives = 140/223 (62.78%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSS 60
           M+A+AT L LSSLTPKTLS SNP+ +LFSLNPSSI   SNPISISA VLRSDR SPA  S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFTRNVAVSSDFDQEEDVLGDDGDDSSYAPD-------------------------QTLR 120
           RF RNVAVSSDFDQEEDVL  DGDDSSYAPD                         Q  R
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 RKSSFRRRQCPARRLVRERWRNLLHLLLMIPGYNILQELEGRALRVNYGPPPPKRDDFSF 180
            +  + +    +R        N+         +N   ELEGR LRVNYGPPPPKRDD SF
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFN-GYELEGRPLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASNFDNPNRIHVGNLAWGVDDLALETMFRDMEMLSKQK 199
           R S+NAS FDN N +HV NLAWGVDDL LE +FR+   + K K
Sbjct: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAK 222

[Close]

BLAST of Sgr022790 vs. ExPASy TrEMBL
Match: A0A6J1J9K2 (29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482509 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.9e-46
Identity = 120/213 (56.34%), Postives = 137/213 (64.32%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSS 60
           MSA+ATS  LS  T KTLSLSNP++KLF LNPSSIRLLSNPIS+S+ VLRS R S  LSS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSTPLSS 60

Query: 61  RFTRNVAVSSDFDQEEDVLGDDGDDSSYAPDQTL------------RRKSSFRRR-QCPA 120
           RF RNVAVSSDF+QEE +   DGD+SSYAPD  L            +    F    Q   
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 RRLVRERWRNLLHLLLMIPGYNILQ-----------ELEGRALRVNYGPPPPKRDDFSFR 180
             +V ++          +   N  +           ELEGR+LRVN GPPPPKRDDFSFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSNADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNASNFDNPNRIHVGNLAWGVDDLALETMFR 190
           GSRN+SNFD PNR+HV NLAWGVDD ALE  FR
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFR 213

[Close]

BLAST of Sgr022790 vs. ExPASy TrEMBL
Match: A0A6J1FAM3 (29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442336 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 3.2e-46
Identity = 123/217 (56.68%), Postives = 139/217 (64.06%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSS 60
           MSA+ATS  LS  T KTLSLSNP++KLF LNPSSIRL SNPIS+S+ VLRS R SP LSS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFTRNVAVSSDFDQEEDVLGDDGDDSSYAPDQTL------------RRKSSFRRR-QCPA 120
           RF RNVAVSSDF+QEE +   DGD+SSYAPD  L            +    F    Q   
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 RRLVRE----RWRNLLHLLL-----------MIPGYNILQELEGRALRVNYGPPPPKRDD 180
             +V +    R R    + +              GY    ELEGR+LRVN GPPPPKRDD
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGY----ELEGRSLRVNNGPPPPKRDD 180

Query: 181 FSFRGSRNASNFDNPNRIHVGNLAWGVDDLALETMFR 190
           FSFRGSRN+SNFD PNR+HV NLAWGVDD ALE  FR
Sbjct: 181 FSFRGSRNSSNFDKPNRVHVSNLAWGVDDHALENFFR 213

[Close]

BLAST of Sgr022790 vs. ExPASy TrEMBL
Match: A0A6J1KUB7 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498740 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 122/223 (54.71%), Postives = 137/223 (61.43%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPALSS 60
           M+A+AT L LSSLTPKTLS SNP+ +LFSLNPSSI   SNPISISA V RS R SPA  S
Sbjct: 1   MAASATFLPLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVFRSHRVSPAFFS 60

Query: 61  RFTRNVAVSSDFDQEEDVLGDDGDDSSYAPD-------------------------QTLR 120
           RF RNVAVSSDFDQEEDVL  DGDDSSYAPD                         Q  R
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 RKSSFRRRQCPARRLVRERWRNLLHLLLMIPGYNILQELEGRALRVNYGPPPPKRDDFSF 180
            +  + +    +R        N+         +N   ELEGR LRVN GPPPPKRDD SF
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFN-GYELEGRPLRVNCGPPPPKRDDSSF 180

Query: 181 RGSRNASNFDNPNRIHVGNLAWGVDDLALETMFRDMEMLSKQK 199
           R S+NAS FDN N +HV NLAWGVDDL LE +FR+   + K K
Sbjct: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAK 222

[Close]

BLAST of Sgr022790 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-15
Identity = 81/240 (33.75%), Postives = 114/240 (47.50%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRLLSNPISISAFVLRSDRASPAL-- 60
           M+A+A+SLALSS  PK+L     R       P+S+ LLS  +S   F L SD  S ++  
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSR-------PASVSLLSPSLS---FKLNSDSVSFSIAA 60

Query: 61  -----SSRFTRNVAVSSDFDQEEDVLGD--DGDDSSYAPDQTL-RRKSSFRRRQCPARRL 120
                +SRF RNVA++S+F+ EED   D     + S++ D  L      F        +L
Sbjct: 61  KWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQL 120

Query: 121 ----------------VRERWRNLLHLLL-----------MIPGYNILQELEGRALRVNY 180
                           +  R R    + +              GY    EL+GR LRVN 
Sbjct: 121 FESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGY----ELDGRPLRVNA 180

Query: 181 GPPPPKRDDFSFRGSRNA-------------SNFDNPNRIHVGNLAWGVDDLALETMFRD 191
           GPPPPKR+D   RG R++             S   + NR++VGNL+WGVDD+ALE++F +
Sbjct: 181 GPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSE 226

[Close]

BLAST of Sgr022790 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-11
Identity = 87/285 (30.53%), Postives = 115/285 (40.35%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRL-LSNPISISAFVLRSDR-ASPA- 60
           MSA+A+S  LS+  PK+L L   R    S+ P S+   L +   +S F   + + +SPA 
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  LSSRFTRNVAVSSDFDQEEDVLGDDGDDS------SYAPDQTL-RRKSSFRRRQCPARRL 120
             SRF RNVAVSSDF+ EED +  DGDDS      S++PD  L     SF        +L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 ----------------VRERWRNLLHLLL-----------MIPGYNILQELEGRALRVNY 180
                           V  R R    + +              GY    E EGR LRVN 
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY----EFEGRPLRVNA 180

Query: 181 GPPPPKRDDFSFRGSR-------------------------------------------- 191
           GPPPPKR++   RG R                                            
Sbjct: 181 GPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGG 240

[Close]

BLAST of Sgr022790 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-11
Identity = 87/285 (30.53%), Postives = 115/285 (40.35%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRL-LSNPISISAFVLRSDR-ASPA- 60
           MSA+A+S  LS+  PK+L L   R    S+ P S+   L +   +S F   + + +SPA 
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  LSSRFTRNVAVSSDFDQEEDVLGDDGDDS------SYAPDQTL-RRKSSFRRRQCPARRL 120
             SRF RNVAVSSDF+ EED +  DGDDS      S++PD  L     SF        +L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 ----------------VRERWRNLLHLLL-----------MIPGYNILQELEGRALRVNY 180
                           V  R R    + +              GY    E EGR LRVN 
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY----EFEGRPLRVNA 180

Query: 181 GPPPPKRDDFSFRGSR-------------------------------------------- 191
           GPPPPKR++   RG R                                            
Sbjct: 181 GPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGG 240

[Close]

BLAST of Sgr022790 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-11
Identity = 87/285 (30.53%), Postives = 115/285 (40.35%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRL-LSNPISISAFVLRSDR-ASPA- 60
           MSA+A+S  LS+  PK+L L   R    S+ P S+   L +   +S F   + + +SPA 
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  LSSRFTRNVAVSSDFDQEEDVLGDDGDDS------SYAPDQTL-RRKSSFRRRQCPARRL 120
             SRF RNVAVSSDF+ EED +  DGDDS      S++PD  L     SF        +L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 ----------------VRERWRNLLHLLL-----------MIPGYNILQELEGRALRVNY 180
                           V  R R    + +              GY    E EGR LRVN 
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY----EFEGRPLRVNA 180

Query: 181 GPPPPKRDDFSFRGSR-------------------------------------------- 191
           GPPPPKR++   RG R                                            
Sbjct: 181 GPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGG 240

[Close]

BLAST of Sgr022790 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-10
Identity = 87/302 (28.81%), Postives = 120/302 (39.74%), Query Frame = 0


Query: 1   MSAAATSLALSSLTPKTLSLSNPRLKLFSLNPSSIRL-LSNPISISAFVLRSDR-ASPA- 60
           MSA+A+S  LS+  PK+L L   R    S+ P S+   L +   +S F   + + +SPA 
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  LSSRFTRNVAVSSDFDQEEDVLGDDGDDS------SYAPD-------------------- 120
             SRF RNVAVSSDF+ EED +  DGDDS      S++PD                    
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 ----------QTLRRKSSFRRR-------------QCPARRLVRERWRNLLHLLLMIPGY 180
                     + +  K + R R             +  A++      R L  LL +    
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLI 180

Query: 181 NIL--QELEGRALRVNYGPPPPKRDDFSFRGSR--------------------------- 191
            +L   E EGR LRVN GPPPPKR++   RG R                           
Sbjct: 181 RVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGG 240

The following BLAST results are available for this feature:

BLAST of Sgr022790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144753.1	4.0e-51	60.47	29 kDa ribonucleoprotein A, chloroplastic-like [Momordica charantia]	[more]
XP_022935639.1	9.2e-48	56.05	29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >XP_022935646....	[more]
XP_023538708.1	2.0e-47	56.05	29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6596475.1	4.6e-47	55.61	RNA-binding protein CP29B, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_023528633.1	1.0e-46	57.14	29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sgr022790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08935	1.4e-19	39.01	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49313	2.1e-18	37.39	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q9ZUU4	1.8e-14	33.75	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
Q43349	1.3e-09	30.53	29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A...	[more]
P49314	1.3e-09	41.03	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of Sgr022790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CU52	1.9e-51	60.47	29 kDa ribonucleoprotein A, chloroplastic-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1F601	4.4e-48	56.05	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J9K2	1.9e-46	56.34	29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FAM3	3.2e-46	56.68	29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KUB7	1.2e-45	54.71	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Sgr022790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37220.1	1.3e-15	33.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	9.6e-11	30.53	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	9.6e-11	30.53	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	9.6e-11	30.53	chloroplast RNA-binding protein 29	[more]
AT3G53460.4	3.6e-10	28.81	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..99
None	No IPR available	PANTHER	PTHR48025:SF1	29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 132..189
None	No IPR available	PANTHER	PTHR48025:SF1	29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 1..94
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..94
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 132..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr022790.1	Sgr022790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0003723	RNA binding