Sgr021607 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr021607
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionSuccinate dehydrogenase assembly factor 4, mitochondrial
Locationtig00153764: 483028 .. 483375 (+)
RNA-Seq ExpressionSgr021607
SyntenySgr021607
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGCAATCTTAGCCGTCTATTCTCTTCGGTTCCGAGTCTCTCCGCTCCCAAGCTTGCCCTACCGTCGCTGAGTCGCGTCACTTCCAACTCGTTGAACCGATTCGTCGGCTCCTCATCGAATCAAGAACCCTCTCGATCGCAGCAAGGCGTTGCCGGCGAGGAACAACGAGAGGCCGGGAAAGAAAGTTTGCTAAATCAACACGAGGATGCCGGAGATGATCGAGGCGGTGAAGATGAAGGAGTTGATGTGAATGAAGCCACCGTCGAGGTCGGTGGCCCCAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAACGGCCGGTGCTGCGATTTTTAA

mRNA sequence

ATGTCGAGCAATCTTAGCCGTCTATTCTCTTCGGTTCCGAGTCTCTCCGCTCCCAAGCTTGCCCTACCGTCGCTGAGTCGCGTCACTTCCAACTCGTTGAACCGATTCGTCGGCTCCTCATCGAATCAAGAACCCTCTCGATCGCAGCAAGGCGTTGCCGGCGAGGAACAACGAGAGGCCGGGAAAGAAAGTTTGCTAAATCAACACGAGGATGCCGGAGATGATCGAGGCGGTGAAGATGAAGGAGTTGATGTGAATGAAGCCACCGTCGAGGTCGGTGGCCCCAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAACGGCCGGTGCTGCGATTTTTAA

Coding sequence (CDS)

ATGTCGAGCAATCTTAGCCGTCTATTCTCTTCGGTTCCGAGTCTCTCCGCTCCCAAGCTTGCCCTACCGTCGCTGAGTCGCGTCACTTCCAACTCGTTGAACCGATTCGTCGGCTCCTCATCGAATCAAGAACCCTCTCGATCGCAGCAAGGCGTTGCCGGCGAGGAACAACGAGAGGCCGGGAAAGAAAGTTTGCTAAATCAACACGAGGATGCCGGAGATGATCGAGGCGGTGAAGATGAAGGAGTTGATGTGAATGAAGCCACCGTCGAGGTCGGTGGCCCCAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAACGGCCGGTGCTGCGATTTTTAA

Protein sequence

MSSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREAGKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF
Homology
BLAST of Sgr021607 vs. NCBI nr
Match: KGN49871.1 (hypothetical protein Csa_000062 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 5.7e-34
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 0

Query: 1   MSSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREA 60
           MSSNLSRLFSS P+LS    ALP++SR+T NSL+RFV SSSNQ+PSR ++GV+ EEQREA
Sbjct: 1   MSSNLSRLFSSPPTLS----ALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREA 60

Query: 61  GKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           GK S  N+HE AGDDRGG+DEGVD  + T E+GGPKGPEPTRYGDWER GRC DF
Sbjct: 61  GKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

BLAST of Sgr021607 vs. NCBI nr
Match: KAA0042555.1 (succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa] >TYK05959.1 succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 2.4e-32
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 1   MSSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREA 60
           MSS+LSRLFSS P+LS    ALP++ R+TSNSL+RFV SSSNQ+PSRS+QGV+ EEQREA
Sbjct: 1   MSSHLSRLFSSPPTLS----ALPTVGRLTSNSLSRFVSSSSNQQPSRSEQGVSSEEQREA 60

Query: 61  GKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
            K S  NQHE AGDDRG +D+GVD  +   E+GGPKG EPTRYGDWERNGRC DF
Sbjct: 61  EKGSSPNQHEAAGDDRGSQDQGVDTEKMAPEIGGPKGHEPTRYGDWERNGRCYDF 111

BLAST of Sgr021607 vs. NCBI nr
Match: XP_022995844.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima])

HSP 1 Score: 147.1 bits (370), Expect = 9.1e-32
Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = 0

Query: 1   MSSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREA 60
           MSSNL+RLFS  PSL+    AL +++RVTS S++R V SS+NQ+PSR +QGV GEEQREA
Sbjct: 1   MSSNLTRLFSP-PSLT----ALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREA 60

Query: 61  GKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           GK SL +QHE AGDDR  EDEG DVN+AT EVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  GKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

BLAST of Sgr021607 vs. NCBI nr
Match: XP_022957978.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata])

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-31
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 1   MSSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREA 60
           MSSNL+RLFS  PSL+    AL +++R TS S++R V SS+NQ+PSR +QGV GEEQREA
Sbjct: 1   MSSNLTRLFSP-PSLT----ALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREA 60

Query: 61  GKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           GK SL +QHE AGDDR  EDEG DVN+AT EVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  GKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

BLAST of Sgr021607 vs. NCBI nr
Match: XP_023532848.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-30
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 1   MSSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREA 60
           MSSNL+RLFS  PSL+    +L +++R TS S++R V SS+NQ+PSR +QGV GEEQREA
Sbjct: 1   MSSNLTRLFSP-PSLT----SLSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREA 60

Query: 61  GKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           GK SL +QHE AGDDR  EDEG DVN+AT EVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  GKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

BLAST of Sgr021607 vs. ExPASy Swiss-Prot
Match: Q8BTE0 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=10090 GN=Sdhaf4 PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-09
Identity = 26/32 (81.25%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 84  DVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           DVN  T E GGPKGPEPTRYGDWER GRC DF
Sbjct: 73  DVNPVTKEKGGPKGPEPTRYGDWERKGRCIDF 104

BLAST of Sgr021607 vs. ExPASy Swiss-Prot
Match: Q5VUM1 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606 GN=SDHAF4 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-07
Identity = 37/80 (46.25%), Postives = 45/80 (56.25%), Query Frame = 0

Query: 41  SNQEPSRSQQGVAGEEQREAGKESLLNQHEDAGDDRGGEDEGV-----DVNEATVEVGGP 100
           S ++ S SQ G +   ++   K  L     DA +D   E E +     DVN  T E GGP
Sbjct: 29  SLRKTSSSQGGKSELVKQSLKKPKLPEGRFDAPEDSHLEKEPLEKFPDDVNPVTKEKGGP 88

Query: 101 KGPEPTRYGDWERNGRCCDF 116
           +GPEPTRYGDWER GRC DF
Sbjct: 89  RGPEPTRYGDWERKGRCIDF 108

BLAST of Sgr021607 vs. ExPASy Swiss-Prot
Match: Q9VLU6 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Sirup PE=3 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 0

Query: 86  NEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           N  T E+GGP GPEPTRYGDWER GR  DF
Sbjct: 89  NPYTGEIGGPAGPEPTRYGDWERKGRVSDF 118

BLAST of Sgr021607 vs. ExPASy Swiss-Prot
Match: Q54Y25 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278459 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.0e-06
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 0

Query: 3   SNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREAGK 62
           +NL   F+ +  L+A K      +++  +  +  + +++N   + +   ++  ++ E  K
Sbjct: 2   NNLISKFNKIIYLNATK----QTNKINCSFYSTTINNNNNNNNNNNNNNIS-NKKAEMSK 61

Query: 63  ES--LLNQHEDAGDDRGGEDEGVD-VNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           E+  LL   E+  D    EDE    VN  T E+GGPKGPEPTRY DWERNGR  DF
Sbjct: 62  ENQQLLQDLEEEFD----EDEFKPYVNPITKEIGGPKGPEPTRYNDWERNGRVSDF 108

BLAST of Sgr021607 vs. ExPASy TrEMBL
Match: A0A0A0KQ66 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G139490 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.8e-34
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 0

Query: 1   MSSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREA 60
           MSSNLSRLFSS P+LS    ALP++SR+T NSL+RFV SSSNQ+PSR ++GV+ EEQREA
Sbjct: 1   MSSNLSRLFSSPPTLS----ALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREA 60

Query: 61  GKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           GK S  N+HE AGDDRGG+DEGVD  + T E+GGPKGPEPTRYGDWER GRC DF
Sbjct: 61  GKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

BLAST of Sgr021607 vs. ExPASy TrEMBL
Match: A0A5A7TMD3 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00530 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 1   MSSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREA 60
           MSS+LSRLFSS P+LS    ALP++ R+TSNSL+RFV SSSNQ+PSRS+QGV+ EEQREA
Sbjct: 1   MSSHLSRLFSSPPTLS----ALPTVGRLTSNSLSRFVSSSSNQQPSRSEQGVSSEEQREA 60

Query: 61  GKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
            K S  NQHE AGDDRG +D+GVD  +   E+GGPKG EPTRYGDWERNGRC DF
Sbjct: 61  EKGSSPNQHEAAGDDRGSQDQGVDTEKMAPEIGGPKGHEPTRYGDWERNGRCYDF 111

BLAST of Sgr021607 vs. ExPASy TrEMBL
Match: A0A6J1K722 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111491251 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.4e-32
Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = 0

Query: 1   MSSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREA 60
           MSSNL+RLFS  PSL+    AL +++RVTS S++R V SS+NQ+PSR +QGV GEEQREA
Sbjct: 1   MSSNLTRLFSP-PSLT----ALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREA 60

Query: 61  GKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           GK SL +QHE AGDDR  EDEG DVN+AT EVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  GKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

BLAST of Sgr021607 vs. ExPASy TrEMBL
Match: A0A6J1H1T7 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111459345 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 1   MSSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREA 60
           MSSNL+RLFS  PSL+    AL +++R TS S++R V SS+NQ+PSR +QGV GEEQREA
Sbjct: 1   MSSNLTRLFSP-PSLT----ALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREA 60

Query: 61  GKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           GK SL +QHE AGDDR  EDEG DVN+AT EVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 61  GKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

BLAST of Sgr021607 vs. ExPASy TrEMBL
Match: W9RP47 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Morus notabilis OX=981085 GN=L484_000138 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-19
Identity = 66/120 (55.00%), Postives = 83/120 (69.17%), Query Frame = 0

Query: 1   MSSNLSRLFSSVPSLSAPKLALPS-----LSRVTSNSLNRFVGSSSNQEPSRSQQGVAGE 60
           M+SNL RLFSS+ +LS PK+ L S     L+R  +NS +R V SSS Q+P   Q+ +  +
Sbjct: 1   MASNLGRLFSSITNLSTPKVILSSTRSEPLTRCATNSASRLV-SSSAQKPQYDQENM-NK 60

Query: 61  EQREAGKESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           EQREA  + L N+ ED  +D   E+EG  +NE T EVGGP+GPEPTRYGDWERNGRC DF
Sbjct: 61  EQREAIAKDLENEKEDGVED---EEEGTSLNEQTGEVGGPRGPEPTRYGDWERNGRCYDF 115

BLAST of Sgr021607 vs. TAIR 10
Match: AT5G67490.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-08
Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = 0

Query: 2   SSNLSRLFSSVPSLSAPKLALPSLSRVTSNSLNRFVGSSSNQEPSRSQQGVAGEEQREAG 61
           ++N+ RL +  PS S     L  +SR  S+           Q PS +Q      +  +  
Sbjct: 3   TNNIVRLIA--PSRSVSSRFLEPVSRFLSSGT-----PPPPQAPSPNQDLNRDVKPDQNL 62

Query: 62  KESLLNQHEDAGDDRGGEDEGVDVNEATVEVGGPKGPEPTRYGDWERNGRCCDF 116
           +++L  Q E+  +  GG   G  VNE T E+GGP+GPEPTRYGDWE+ GRC DF
Sbjct: 63  QQNLQMQKEEEEEGEGG-GGGEFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49871.15.7e-3472.17hypothetical protein Csa_000062 [Cucumis sativus][more]
KAA0042555.12.4e-3270.43succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa] >TYK05959.1... [more]
XP_022995844.19.1e-3272.17succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima][more]
XP_022957978.15.9e-3171.30succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata][more]
XP_023532848.11.3e-3070.43succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. ... [more]
Match NameE-valueIdentityDescription
Q8BTE03.0e-0981.25Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=1009... [more]
Q5VUM12.8e-0746.25Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606... [more]
Q9VLU61.8e-0673.33Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogas... [more]
Q54Y259.0e-0635.34Succinate dehydrogenase assembly factor 4, mitochondrial OS=Dictyostelium discoi... [more]
Match NameE-valueIdentityDescription
A0A0A0KQ662.8e-3472.17Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis sativus OX=3... [more]
A0A5A7TMD31.2e-3270.43Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis melo var. ma... [more]
A0A6J1K7224.4e-3272.17Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita maxima OX=... [more]
A0A6J1H1T72.9e-3171.30Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita moschata O... [more]
W9RP472.5e-1955.00Succinate dehydrogenase assembly factor 4, mitochondrial OS=Morus notabilis OX=9... [more]
Match NameE-valueIdentityDescription
AT5G67490.15.8e-0838.60unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674... [more]
InterPro
Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012875Succinate dehydrogenase assembly factor 4PFAMPF07896DUF1674coord: 83..115
e-value: 1.1E-16
score: 61.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..76
NoneNo IPR availablePANTHERPTHR28524SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIALcoord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr021607.1Sgr021607.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034553 mitochondrial respiratory chain complex II assembly
cellular_component GO:0005739 mitochondrion