Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATGGAACAAAGAGACCTGCAGAGGATAGTGGTGGAGTGGAAAGCCCTAAGCGAGAAGCAAGAAGGTAGAGTCCGATACTACCACACCCAAGTTCACAAAACAATCGTCGCCTATCTCATTTGGGAACGCGTCTTCTTCTTTGCTGTCTCCCATTCCAACCTCAATTGCAGTAGCTGGTGGGTGGCTGTTACTTTAAATTCTTTATGCAGCTTTGTTTTCATGGTGATTTTTTATGACAGCGCTCTAAAGCTGTACGAGACAGAGCACGAGCTCAATATGATTTTTTGGGGACAGACTGAACTTTATCGAACAATCTCAGCAACGATGCTGACAAACTCAAATATTGGGTGTAGGAGGAGGGAAGTTTATATTTACATCATTTTGTTGGCTATGGTTCTCATTGCAGCTATGGAGTCATATGGTTGTAAGTTTGAGTTGTGCCAAGTGAAGGCAAAATAA
mRNA sequence
ATGGCTATGGAACAAAGAGACCTGCAGAGGATAGTGGTGGAGTGGAAAGCCCTAAGCGAGAAGCAAGAAGGTAGAGTCCGATACTACCACACCCAAGTTCACAAAACAATCGTCGCCTATCTCATTTGGGAACGCGTCTTCTTCTTTGCTGTCTCCCATTCCAACCTCAATTGCAGTAGCTGGTGGGTGGCTGTTACTTTAAATTCTTTATGCAGCTTTGTTTTCATGGTGATTTTTTATGACAGCGCTCTAAAGCTGTACGAGACAGAGCACGAGCTCAATATGATTTTTTGGGGACAGACTGAACTTTATCGAACAATCTCAGCAACGATGCTGACAAACTCAAATATTGGGTGTAGGAGGAGGGAAGTTTATATTTACATCATTTTGTTGGCTATGGTTCTCATTGCAGCTATGGAGTCATATGGTTGTAAGTTTGAGTTGTGCCAAGTGAAGGCAAAATAA
Coding sequence (CDS)
ATGGCTATGGAACAAAGAGACCTGCAGAGGATAGTGGTGGAGTGGAAAGCCCTAAGCGAGAAGCAAGAAGGTAGAGTCCGATACTACCACACCCAAGTTCACAAAACAATCGTCGCCTATCTCATTTGGGAACGCGTCTTCTTCTTTGCTGTCTCCCATTCCAACCTCAATTGCAGTAGCTGGTGGGTGGCTGTTACTTTAAATTCTTTATGCAGCTTTGTTTTCATGGTGATTTTTTATGACAGCGCTCTAAAGCTGTACGAGACAGAGCACGAGCTCAATATGATTTTTTGGGGACAGACTGAACTTTATCGAACAATCTCAGCAACGATGCTGACAAACTCAAATATTGGGTGTAGGAGGAGGGAAGTTTATATTTACATCATTTTGTTGGCTATGGTTCTCATTGCAGCTATGGAGTCATATGGTTGTAAGTTTGAGTTGTGCCAAGTGAAGGCAAAATAA
Protein sequence
MAMEQRDLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERVFFFAVSHSNLNCSSWWVAVTLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTISATMLTNSNIGCRRREVYIYIILLAMVLIAAMESYGCKFELCQVKAK
Homology
BLAST of Sgr021185 vs. NCBI nr
Match:
KAG6579344.1 (hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 114.0 bits (284), Expect = 1.1e-21
Identity = 71/183 (38.80%), Postives = 102/183 (55.74%), Query Frame = 0
Query: 5 QRDLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERV-----FFFAVSHSN---- 64
+ +++ + E K + EK EGRV YY T++H IVAYL+WERV FFF VS++N
Sbjct: 4 EEQMEKRMEEVKGMWEKVEGRVNYYDTKLHAIIVAYLVWERVFFFFFFFFGVSNTNFASN 63
Query: 65 ---LNCS-SWWVAVTLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTISA-- 124
L+C+ WWV V L+ LCSFV+M++F D+AL LY +++LN+I +LYR + A
Sbjct: 64 ISTLSCNGKWWVIVALSCLCSFVYMLLFVDAALMLYPHQNQLNLILQTHHQLYRQLLAIK 123
Query: 125 -------------------TMLTNSNIGCRR----REVYIYIILLAMVLIAAMESYGCKF 150
ML NSN RR R+ Y+Y I A++ +A++E Y C
Sbjct: 124 DSLMEAGDEASHGLSLEEELMLINSNAAYRRRPWGRKFYVYTIFCALIDVASLELYACNS 183
BLAST of Sgr021185 vs. NCBI nr
Match:
KAG6579345.1 (hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 106.3 bits (264), Expect = 2.4e-19
Identity = 64/186 (34.41%), Postives = 101/186 (54.30%), Query Frame = 0
Query: 5 QRDLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERVFFFAVSH-------SNLN 64
+ +L++++ E + + E E +V YY T++H IVAY +WERVFFF +S S L+
Sbjct: 7 EEELKKMMEEVQGMGENVEAKVNYYDTKLHNIIVAYFVWERVFFFGISKKTFPPTISTLS 66
Query: 65 CS-SWWVAVTLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTISA------- 124
C+ +WWV + L+S CSFV++++F+D+AL LY E++L++I +L R + A
Sbjct: 67 CNGNWWVILALSSSCSFVYVLLFFDTALMLYRHENQLHLILQKHAQLCRHLLAIKEEQAD 126
Query: 125 ---------------------TMLTNSNIGCRR-----REVYIYIILLAMVLIAAMESYG 150
ML NS RR R+VY+Y I A++ +A++E Y
Sbjct: 127 IKASLMEAGDEASHGLSLEEELMLINSTSPFRRRRPWERKVYVYTIFCALIGVASLELYA 186
BLAST of Sgr021185 vs. NCBI nr
Match:
KAG6579352.1 (hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 105.1 bits (261), Expect = 5.3e-19
Identity = 65/188 (34.57%), Postives = 101/188 (53.72%), Query Frame = 0
Query: 3 MEQRDLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERVFFFAVSH-------SN 62
ME +L++++ E + + EK E +V YY T++H IVAY +WERVFFF +S S
Sbjct: 1 MEVEELKKMMEEVQGMGEKVEAKVNYYDTKLHTIIVAYFVWERVFFFGISKKTFPSTIST 60
Query: 63 LNCS-SWWVAVTLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTISA----- 122
L+C+ +WWV + L+ CSFV++++F+D+AL LY E++L++I +L R + A
Sbjct: 61 LSCNGNWWVILALSCSCSFVYVLLFFDAALMLYRHENQLHLILQKHAQLCRHLLAIKEEQ 120
Query: 123 -----------------------TMLTNSNIGCRR-----REVYIYIILLAMVLIAAMES 150
ML NS RR R+V++Y I A + +A++E
Sbjct: 121 ADTKASLMEAGDQASHGLSLEEELMLINSTSPFRRRRPWERKVHVYTIFCAFIGVASLEL 180
BLAST of Sgr021185 vs. NCBI nr
Match:
XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])
HSP 1 Score: 97.8 bits (242), Expect = 8.5e-17
Identity = 57/171 (33.33%), Postives = 91/171 (53.22%), Query Frame = 0
Query: 7 DLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERVFFFAVSH--SNLNCSSWWVA 66
+L+R E K ++EKQE RVRYY T+V + YLI+ R+FFF +S S+ NC WWV
Sbjct: 5 ELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKDWWVI 64
Query: 67 VTLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTISAT-------------- 126
+ L+ LCSF++ ++F D+ L+ T+++L++I EL++ I +
Sbjct: 65 LALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSMETGE 124
Query: 127 ------------MLTNSNIGCRRREVYIYIILLAMVLIAAMESYGCKFELC 150
ML + R+VYIY + A++ + A+E Y K+ LC
Sbjct: 125 SSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLC 175
BLAST of Sgr021185 vs. NCBI nr
Match:
KAE8650729.1 (hypothetical protein Csa_023412 [Cucumis sativus])
HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 64/178 (35.96%), Postives = 96/178 (53.93%), Query Frame = 0
Query: 3 MEQRDLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERVFFFAVSH--------S 62
ME +L++ + E KA+SEKQE YY T++H I AY IWER F FA+S+ S
Sbjct: 5 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS 64
Query: 63 NLNC-SSWWVAVTLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTIS----- 122
+L C ++W + + L+SL S V+++++ D+AL LY +E + N+I +LY IS
Sbjct: 65 SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE 124
Query: 123 --------------ATMLTNSNIGCRRRE---VYIYIILLAMVLIAAMESYGCKFELC 150
+L NS+ RR E Y+ I A+V +A++E Y CK LC
Sbjct: 125 FNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSILC 182
BLAST of Sgr021185 vs. ExPASy TrEMBL
Match:
A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 4.1e-17
Identity = 57/171 (33.33%), Postives = 91/171 (53.22%), Query Frame = 0
Query: 7 DLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERVFFFAVSH--SNLNCSSWWVA 66
+L+R E K ++EKQE RVRYY T+V + YLI+ R+FFF +S S+ NC WWV
Sbjct: 5 ELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKDWWVI 64
Query: 67 VTLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTISAT-------------- 126
+ L+ LCSF++ ++F D+ L+ T+++L++I EL++ I +
Sbjct: 65 LALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSMETGE 124
Query: 127 ------------MLTNSNIGCRRREVYIYIILLAMVLIAAMESYGCKFELC 150
ML + R+VYIY + A++ + A+E Y K+ LC
Sbjct: 125 SSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLC 175
BLAST of Sgr021185 vs. ExPASy TrEMBL
Match:
A0A0A0L822 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G484330 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 6.0e-16
Identity = 64/178 (35.96%), Postives = 96/178 (53.93%), Query Frame = 0
Query: 3 MEQRDLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERVFFFAVSH--------S 62
ME +L++ + E KA+SEKQE YY T++H I AY IWER F FA+S+ S
Sbjct: 1 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS 60
Query: 63 NLNC-SSWWVAVTLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTIS----- 122
+L C ++W + + L+SL S V+++++ D+AL LY +E + N+I +LY IS
Sbjct: 61 SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE 120
Query: 123 --------------ATMLTNSNIGCRRRE---VYIYIILLAMVLIAAMESYGCKFELC 150
+L NS+ RR E Y+ I A+V +A++E Y CK LC
Sbjct: 121 FNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSILC 178
BLAST of Sgr021185 vs. ExPASy TrEMBL
Match:
A0A6J1DX74 (uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023953 PE=4 SV=1)
HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = 0
Query: 7 DLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERVFFFAVSH-SNLNCSSWWVAV 66
+L+R E K ++EKQE RVRY+ + K + YLI R+FFF +S S+ C WWV +
Sbjct: 5 ELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSSSKCHDWWVIL 64
Query: 67 TLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTISAT--------------- 126
+L+ LCSFV+ ++F D+A +LY+T+ +L+MI E+ + I
Sbjct: 65 SLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAMEGGDF 124
Query: 127 -----------MLTNSNIGCRRREVYIYIILLAMVLIAAMESYGCKFELC 150
ML + R+VYIY + A+V + A+E Y K+ LC
Sbjct: 125 SDGFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLC 174
BLAST of Sgr021185 vs. ExPASy TrEMBL
Match:
A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 50/179 (27.93%), Postives = 89/179 (49.72%), Query Frame = 0
Query: 3 MEQRDLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERVFFFAVSHSN---LNCS 62
ME +L+R K L EKQE RV+Y+ ++ +AYLIW R+FFFA+S ++ L C
Sbjct: 1 MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 60
Query: 63 SWWVAVTLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTI--SATMLTNSNI 122
WW+ + L+ C+FV+ + F ++ LY +H++++I Q E+ + I + + L + ++
Sbjct: 61 DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 120
Query: 123 GCR-------------------------RREVYIYIILLAMVLIAAMESYGCKFELCQV 152
R+ YI + A++ + A+E Y C + C +
Sbjct: 121 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYCDM 179
BLAST of Sgr021185 vs. ExPASy TrEMBL
Match:
A0A6J1DTV6 (uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023951 PE=4 SV=1)
HSP 1 Score: 77.4 bits (189), Expect = 5.8e-11
Identity = 42/107 (39.25%), Postives = 68/107 (63.55%), Query Frame = 0
Query: 3 MEQRDLQRIVVEWKALSEKQEGRVRYYHTQVHKTIVAYLIWERVFFFAVSH--SNLNCSS 62
M+ R L+R E K L+EKQE +R+Y ++ + YLIWER FFFA+S S L C
Sbjct: 1 MKLRVLKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQTSSPLKCID 60
Query: 63 WWVAVTLNSLCSFVFMVIFYDSALKLYETEHELNMIFWGQTELYRTI 108
W V + L+ +CSFV+ ++F ++ LY T+++++MI Q+++ + I
Sbjct: 61 WRVVLGLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQI 107
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6579344.1 | 1.1e-21 | 38.80 | hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6579345.1 | 2.4e-19 | 34.41 | hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6579352.1 | 5.3e-19 | 34.57 | hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022157182.1 | 8.5e-17 | 33.33 | uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... | [more] |
KAE8650729.1 | 1.2e-15 | 35.96 | hypothetical protein Csa_023412 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DSQ0 | 4.1e-17 | 33.33 | uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A0A0L822 | 6.0e-16 | 35.96 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G484330 PE=4 SV=1 | [more] |
A0A6J1DX74 | 3.0e-15 | 34.12 | uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
A0A6J1DS87 | 1.5e-11 | 27.93 | uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1DTV6 | 5.8e-11 | 39.25 | uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
Match Name | E-value | Identity | Description | |