Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAATCGGAATCGGCGAAAGGATGCAAGAGGCACCCCAATCACAATCTCTTACCGGGAATTTGCCCGTCGTGTCTCCGAGAAAGGCTTCTCCAATTCCATCAATCTTCAACTTCCGATTCCGTTTCCACCGTTCACAGCTTCTCCTCTTCGTCTTCTTCGATTCCTCCGTCGTCTGAACTTTTCTTCTCCGCCGAATCTCCACGGCGGCGCCACCACCGGAGGAACGCGTCCGAGCTGGTGACGGCTTCGGATTTCTTCGGGGACAAGCTGAAGAAGAGCGGCTCGATTGGGCTCGACGCCGGATGCTACCACGGCGGCGGCGGAGGGAAGAAGAAGAAAGGTGGGTTTTGGTCGAAGTTGCTGCTCCGGCCGAAGGCCTTGTATTTTCATTCGCAGCCCAAGGTTTCGAGGGAAATTCTGGGTTGA
mRNA sequence
ATGGGAAAATCGGAATCGGCGAAAGGATGCAAGAGGCACCCCAATCACAATCTCTTACCGGGAATTTGCCCGTCGTGTCTCCGAGAAAGGCTTCTCCAATTCCATCAATCTTCAACTTCCGATTCCGTTTCCACCGTTCACAGCTTCTCCTCTTCGTCTTCTTCGATTCCTCCGTCGTCTGAACTTTTCTTCTCCGCCGAATCTCCACGGCGGCGCCACCACCGGAGGAACGCGTCCGAGCTGGTGACGGCTTCGGATTTCTTCGGGGACAAGCTGAAGAAGAGCGGCTCGATTGGGCTCGACGCCGGATGCTACCACGGCGGCGGCGGAGGGAAGAAGAAGAAAGGTGGGTTTTGGTCGAAGTTGCTGCTCCGGCCGAAGGCCTTGTATTTTCATTCGCAGCCCAAGGTTTCGAGGGAAATTCTGGGTTGA
Coding sequence (CDS)
ATGGGAAAATCGGAATCGGCGAAAGGATGCAAGAGGCACCCCAATCACAATCTCTTACCGGGAATTTGCCCGTCGTGTCTCCGAGAAAGGCTTCTCCAATTCCATCAATCTTCAACTTCCGATTCCGTTTCCACCGTTCACAGCTTCTCCTCTTCGTCTTCTTCGATTCCTCCGTCGTCTGAACTTTTCTTCTCCGCCGAATCTCCACGGCGGCGCCACCACCGGAGGAACGCGTCCGAGCTGGTGACGGCTTCGGATTTCTTCGGGGACAAGCTGAAGAAGAGCGGCTCGATTGGGCTCGACGCCGGATGCTACCACGGCGGCGGCGGAGGGAAGAAGAAGAAAGGTGGGTTTTGGTCGAAGTTGCTGCTCCGGCCGAAGGCCTTGTATTTTCATTCGCAGCCCAAGGTTTCGAGGGAAATTCTGGGTTGA
Protein sequence
MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQSSTSDSVSTVHSFSSSSSSIPPSSELFFSAESPRRRHHRRNASELVTASDFFGDKLKKSGSIGLDAGCYHGGGGGKKKKGGFWSKLLLRPKALYFHSQPKVSREILG
Homology
BLAST of Sgr020619 vs. NCBI nr
Match:
XP_022985135.1 (uncharacterized protein LOC111483218, partial [Cucurbita maxima])
HSP 1 Score: 169.5 bits (428), Expect = 2.1e-38
Identity = 99/147 (67.35%), Postives = 108/147 (73.47%), Query Frame = 0
Query: 1 MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQSSTSDSVSTVHSFSSSSSSIPPSS 60
MGKSESAK CKRH NHN LPGICPSCLRERL Q QSS S++ S S+SSSS SS
Sbjct: 56 MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSS---SINYSDSRSTSSSSFLKSS 115
Query: 61 ELFFSAESPRRRHHRRNASELVT---ASDFFGDKLKKSGSIGLDAGCYHGGGGGKKKKGG 120
E FFS + RR H RNASELVT A+D FGDK+KKS SI + A GGGGG KKK G
Sbjct: 116 ESFFSGNTSWRRRHTRNASELVTGSMAADLFGDKVKKSSSIRISADGGGGGGGGGKKKVG 175
Query: 121 FWSKLLLRPKALYFHSQPKV-SREILG 144
FWS+ L+RPKALYFHS PKV SREILG
Sbjct: 176 FWSRFLVRPKALYFHSHPKVSSREILG 199
BLAST of Sgr020619 vs. NCBI nr
Match:
XP_023553119.1 (uncharacterized protein LOC111810620 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 164.1 bits (414), Expect = 9.0e-37
Identity = 99/147 (67.35%), Postives = 107/147 (72.79%), Query Frame = 0
Query: 1 MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQSSTSDSVSTVHSFSSSSSSIPPSS 60
MGKSESA+ CKRH NHN LPGICPSCLRERL Q QSS S S S S+SSSS SS
Sbjct: 1 MGKSESARECKRHQNHNQLPGICPSCLRERLQQLQQSSISYS----DSRSTSSSSFLKSS 60
Query: 61 ELFFSAESPRRRHHRRNASELVT---ASDFFGDKLKKSGSIGLDAGCYHGGGGGKKKKGG 120
E FFS + RR H RNASELVT A+D FGDK+KKS SI + A GGGGG KKK G
Sbjct: 61 ESFFSGNTSWRRRHTRNASELVTGSMAADLFGDKVKKSSSIRISAD-GGGGGGGGKKKVG 120
Query: 121 FWSKLLLRPKALYFHSQPKV-SREILG 144
FWS+ L+RPKALYFHS PKV SREILG
Sbjct: 121 FWSRFLVRPKALYFHSHPKVSSREILG 142
BLAST of Sgr020619 vs. NCBI nr
Match:
XP_022929275.1 (uncharacterized protein LOC111435907 [Cucurbita moschata])
HSP 1 Score: 160.6 bits (405), Expect = 9.9e-36
Identity = 96/147 (65.31%), Postives = 104/147 (70.75%), Query Frame = 0
Query: 1 MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQSSTSDSVSTVHSFSSSSSSIPPSS 60
MGKSESAK CKRH NHN LPGICPSCLRERL Q QS S+S S S+SSSS SS
Sbjct: 1 MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQS----SISYADSRSTSSSSFLKSS 60
Query: 61 ELFFSAESPRRRHHRRNASELVT---ASDFFGDKLKKSGSIGLDAGCYHGGGGGKKKKGG 120
E FFS + RR H RNASEL T A+D FGDK+KKS SI + A GGG KKK G
Sbjct: 61 ESFFSGNTSWRRRHTRNASELFTGSMAADLFGDKVKKSSSIRISA-----DGGGGKKKVG 120
Query: 121 FWSKLLLRPKALYFHSQPKV-SREILG 144
FWS+ L+RPKALYFHS PKV SREILG
Sbjct: 121 FWSRFLVRPKALYFHSHPKVSSREILG 138
BLAST of Sgr020619 vs. NCBI nr
Match:
XP_022989609.1 (uncharacterized protein LOC111486643 [Cucurbita maxima])
HSP 1 Score: 157.5 bits (397), Expect = 8.4e-35
Identity = 95/151 (62.91%), Postives = 106/151 (70.20%), Query Frame = 0
Query: 1 MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQSST--SDSVSTVHSFSSSSSSIPP 60
MGKSESAK CKRHPNH LLPGICPSCLRE L +F+ S+ SDS ST FSSSSSS P
Sbjct: 1 MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSAST---FSSSSSSFPH 60
Query: 61 SSELFFSAESPR--RRHHRRNASELV---TASDFFGDKLKKSGSIGLDAGCYHGGGGGKK 120
SSE FFS +SPR R HH+RNASE+V A+D FGDKLK SG G K
Sbjct: 61 SSEFFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKLKMSGE-------------GGK 120
Query: 121 KKGGFWSKLLLRPKALYFHSQPKVS-REILG 144
KKGGFWS+L+ KA +FHSQPKVS REI+G
Sbjct: 121 KKGGFWSRLMGGRKAFHFHSQPKVSCREIIG 135
BLAST of Sgr020619 vs. NCBI nr
Match:
XP_023544931.1 (uncharacterized protein LOC111804380 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 155.6 bits (392), Expect = 3.2e-34
Identity = 94/151 (62.25%), Postives = 106/151 (70.20%), Query Frame = 0
Query: 1 MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQSST--SDSVSTVHSFSSSSSSIPP 60
MGKSESAK CKRHPNH LLPGICPSCLRE L +F+ S+ SDSVST FSSSSSS P
Sbjct: 1 MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVST---FSSSSSSFPH 60
Query: 61 SSELFFSAESPR--RRHHRRNASELV---TASDFFGDKLKKSGSIGLDAGCYHGGGGGKK 120
SSE FFS +SPR R HH+RNASE+V A+D FGDK+K GG G K
Sbjct: 61 SSEFFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKVKM-------------GGEGGK 120
Query: 121 KKGGFWSKLLLRPKALYFHSQPKV-SREILG 144
KKGGFWS+L+ KA +FHSQPKV REI+G
Sbjct: 121 KKGGFWSRLMGGRKAFHFHSQPKVCCREIMG 135
BLAST of Sgr020619 vs. ExPASy TrEMBL
Match:
A0A6J1JAI6 (uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 1.0e-38
Identity = 99/147 (67.35%), Postives = 108/147 (73.47%), Query Frame = 0
Query: 1 MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQSSTSDSVSTVHSFSSSSSSIPPSS 60
MGKSESAK CKRH NHN LPGICPSCLRERL Q QSS S++ S S+SSSS SS
Sbjct: 56 MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSS---SINYSDSRSTSSSSFLKSS 115
Query: 61 ELFFSAESPRRRHHRRNASELVT---ASDFFGDKLKKSGSIGLDAGCYHGGGGGKKKKGG 120
E FFS + RR H RNASELVT A+D FGDK+KKS SI + A GGGGG KKK G
Sbjct: 116 ESFFSGNTSWRRRHTRNASELVTGSMAADLFGDKVKKSSSIRISADGGGGGGGGGKKKVG 175
Query: 121 FWSKLLLRPKALYFHSQPKV-SREILG 144
FWS+ L+RPKALYFHS PKV SREILG
Sbjct: 176 FWSRFLVRPKALYFHSHPKVSSREILG 199
BLAST of Sgr020619 vs. ExPASy TrEMBL
Match:
A0A6J1ETY8 (uncharacterized protein LOC111435907 OS=Cucurbita moschata OX=3662 GN=LOC111435907 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 4.8e-36
Identity = 96/147 (65.31%), Postives = 104/147 (70.75%), Query Frame = 0
Query: 1 MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQSSTSDSVSTVHSFSSSSSSIPPSS 60
MGKSESAK CKRH NHN LPGICPSCLRERL Q QS S+S S S+SSSS SS
Sbjct: 1 MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQS----SISYADSRSTSSSSFLKSS 60
Query: 61 ELFFSAESPRRRHHRRNASELVT---ASDFFGDKLKKSGSIGLDAGCYHGGGGGKKKKGG 120
E FFS + RR H RNASEL T A+D FGDK+KKS SI + A GGG KKK G
Sbjct: 61 ESFFSGNTSWRRRHTRNASELFTGSMAADLFGDKVKKSSSIRISA-----DGGGGKKKVG 120
Query: 121 FWSKLLLRPKALYFHSQPKV-SREILG 144
FWS+ L+RPKALYFHS PKV SREILG
Sbjct: 121 FWSRFLVRPKALYFHSHPKVSSREILG 138
BLAST of Sgr020619 vs. ExPASy TrEMBL
Match:
A0A6J1JPT9 (uncharacterized protein LOC111486643 OS=Cucurbita maxima OX=3661 GN=LOC111486643 PE=4 SV=1)
HSP 1 Score: 157.5 bits (397), Expect = 4.1e-35
Identity = 95/151 (62.91%), Postives = 106/151 (70.20%), Query Frame = 0
Query: 1 MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQSST--SDSVSTVHSFSSSSSSIPP 60
MGKSESAK CKRHPNH LLPGICPSCLRE L +F+ S+ SDS ST FSSSSSS P
Sbjct: 1 MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSAST---FSSSSSSFPH 60
Query: 61 SSELFFSAESPR--RRHHRRNASELV---TASDFFGDKLKKSGSIGLDAGCYHGGGGGKK 120
SSE FFS +SPR R HH+RNASE+V A+D FGDKLK SG G K
Sbjct: 61 SSEFFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKLKMSGE-------------GGK 120
Query: 121 KKGGFWSKLLLRPKALYFHSQPKVS-REILG 144
KKGGFWS+L+ KA +FHSQPKVS REI+G
Sbjct: 121 KKGGFWSRLMGGRKAFHFHSQPKVSCREIIG 135
BLAST of Sgr020619 vs. ExPASy TrEMBL
Match:
A0A0A0KZB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1)
HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 94/137 (68.61%), Postives = 101/137 (73.72%), Query Frame = 0
Query: 1 MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQS-STSDSVSTVHSFSSSSSSIPPS 60
MGKSESAK CKRHPNHNLLPGICPSCLRE+L QFHQS + SDS ST FSS SSS S
Sbjct: 1 MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQST---FSSPSSS---S 60
Query: 61 SELFFSAESPR--RRHHRRNASELVTAS---DFFGDKLKKSGSIGLDAGCYHGGGGGKKK 120
S+ FFSA+S R RRHHRRNASE VT S D DKLKK+GSI + G G KK
Sbjct: 61 SDFFFSADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKK 120
Query: 121 KGGFWSKLLLRPKALYF 132
K GFWS+LLLRPKALYF
Sbjct: 121 KLGFWSRLLLRPKALYF 131
BLAST of Sgr020619 vs. ExPASy TrEMBL
Match:
A0A5D3CZT1 (DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00010 PE=4 SV=1)
HSP 1 Score: 151.0 bits (380), Expect = 3.8e-33
Identity = 94/138 (68.12%), Postives = 101/138 (73.19%), Query Frame = 0
Query: 1 MGKSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQS-STSDSVSTVHSFSSSSSSIPPS 60
MGKSESAK CKRHPN+NLLPGICPSCLRE+L QFHQS + SDS ST FSS SSS S
Sbjct: 1 MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQST---FSSPSSS---S 60
Query: 61 SELFFSAESP---RRRHHRRNASELVTAS---DFFGDKLKKSGSIGLDAGCYHGGGGGKK 120
S+ FFSA+S RR HHRRNASE VT S D DKLKKSGSI + A G G K
Sbjct: 61 SDFFFSADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVKGK 120
Query: 121 KKGGFWSKLLLRPKALYF 132
KK GFWS+LLLRPKALYF
Sbjct: 121 KKLGFWSRLLLRPKALYF 132
BLAST of Sgr020619 vs. TAIR 10
Match:
AT1G35210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22470.1); Has 83 Blast hits to 83 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )
HSP 1 Score: 41.2 bits (95), Expect = 8.2e-04
Identity = 21/53 (39.62%), Postives = 33/53 (62.26%), Query Frame = 0
Query: 3 KSESAKGCKRHPNHNLLPGICPSCLRERLLQFHQSSTSDSVSTVHSFSSSSSS 56
K+++A CK+HP H PG+C CL ERL F ++++S + S+SSS+
Sbjct: 24 KTKNAVFCKKHPKHRQSPGVCSLCLNERLSLFIKAASSRRPRSRQILSTSSST 76
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022985135.1 | 2.1e-38 | 67.35 | uncharacterized protein LOC111483218, partial [Cucurbita maxima] | [more] |
XP_023553119.1 | 9.0e-37 | 67.35 | uncharacterized protein LOC111810620 [Cucurbita pepo subsp. pepo] | [more] |
XP_022929275.1 | 9.9e-36 | 65.31 | uncharacterized protein LOC111435907 [Cucurbita moschata] | [more] |
XP_022989609.1 | 8.4e-35 | 62.91 | uncharacterized protein LOC111486643 [Cucurbita maxima] | [more] |
XP_023544931.1 | 3.2e-34 | 62.25 | uncharacterized protein LOC111804380 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1JAI6 | 1.0e-38 | 67.35 | uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218... | [more] |
A0A6J1ETY8 | 4.8e-36 | 65.31 | uncharacterized protein LOC111435907 OS=Cucurbita moschata OX=3662 GN=LOC1114359... | [more] |
A0A6J1JPT9 | 4.1e-35 | 62.91 | uncharacterized protein LOC111486643 OS=Cucurbita maxima OX=3661 GN=LOC111486643... | [more] |
A0A0A0KZB2 | 1.3e-33 | 68.61 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1 | [more] |
A0A5D3CZT1 | 3.8e-33 | 68.12 | DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
Match Name | E-value | Identity | Description | |
AT1G35210.1 | 8.2e-04 | 39.62 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |