Sgr018929 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr018929
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Integrase catalytic domain-containing protein
Location	tig00153228: 800687 .. 801055 (+)
RNA-Seq Expression	Sgr018929
Synteny	Sgr018929

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACATTCTAGCTTCTGGTGTTGATCATTCTTCTATTACTACACATGTTTCTGATGATGTTACTTTACCACTCTCATCTAATGATGTTGTTCCTGCTGATGTTAGCTCATCTACTACTATTATTTCATATTGTGGCACTTCTAATGTTGCTCATAAAGCACCTACTCTGGGTATACCAATTCGCAAGTCTACTCGACCAATCAAACCGCCTTCTTATCCCAACGACTTTCATTGCAGCTTACTTGACTGTTCTAGCATGCCTCTTTCTTGTTTTAAAAATCCATTACAAAATTATCTATCTTATTCGAGGCTATCACCTACTTTTCGGAATTTTGTTTTAAATGTTTCTACTCACTATGAGCCTTAA

mRNA sequence

ATGCACATTCTAGCTTCTGGTGTTGATCATTCTTCTATTACTACACATGTTTCTGATGATGTTACTTTACCACTCTCATCTAATGATGTTGTTCCTGCTGATGTTAGCTCATCTACTACTATTATTTCATATTGTGGCACTTCTAATGTTGCTCATAAAGCACCTACTCTGGGTATACCAATTCGCAAGTCTACTCGACCAATCAAACCGCCTTCTTATCCCAACGACTTTCATTGCAGCTTACTTGACTGTTCTAGCATGCCTCTTTCTTGTTTTAAAAATCCATTACAAAATTATCTATCTTATTCGAGGCTATCACCTACTTTTCGGAATTTTGTTTTAAATGTTTCTACTCACTATGAGCCTTAA

Coding sequence (CDS)

ATGCACATTCTAGCTTCTGGTGTTGATCATTCTTCTATTACTACACATGTTTCTGATGATGTTACTTTACCACTCTCATCTAATGATGTTGTTCCTGCTGATGTTAGCTCATCTACTACTATTATTTCATATTGTGGCACTTCTAATGTTGCTCATAAAGCACCTACTCTGGGTATACCAATTCGCAAGTCTACTCGACCAATCAAACCGCCTTCTTATCCCAACGACTTTCATTGCAGCTTACTTGACTGTTCTAGCATGCCTCTTTCTTGTTTTAAAAATCCATTACAAAATTATCTATCTTATTCGAGGCTATCACCTACTTTTCGGAATTTTGTTTTAAATGTTTCTACTCACTATGAGCCTTAA

Protein sequence

MHILASGVDHSSITTHVSDDVTLPLSSNDVVPADVSSSTTIISYCGTSNVAHKAPTLGIPIRKSTRPIKPPSYPNDFHCSLLDCSSMPLSCFKNPLQNYLSYSRLSPTFRNFVLNVSTHYEP

Homology

[Close]

BLAST of Sgr018929 vs. NCBI nr
Match: KAA8530341.1 (hypothetical protein F0562_005050 [Nyssa sinensis])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 20  DVTLPLSSNDVVPA---DVSSSTT-----IISYCGTSNVA----HKAPTLGIPIRKSTRP 79
           D+ LP S  DV PA     SSS T      + +     VA      A +  I  RKSTR 
Sbjct: 167 DLVLPHSGLDVPPALFVSPSSSVTQEEFEALDFVQDIQVAPLPDTPATSAVIHARKSTRH 226

Query: 80  IKPPSYPNDFHCSLLDCSSMPLSCFKNPLQNYLSYSRLSPTFRNFVLNVSTHYEP 123
           IKPPSY  D+HCSL+   ++P S    PL  +LSY+ LS + R FVL +S+H+EP
Sbjct: 227 IKPPSYLLDYHCSLVSHKTLPDSTSSYPLSKFLSYNSLSASHRAFVLAISSHFEP 281

[Close]

BLAST of Sgr018929 vs. NCBI nr
Match: XP_031259419.1 (uncharacterized protein LOC116117549 [Pistacia vera])

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 10  HSSITTHVSDDVTLPLSSNDVVPADVSSST--TIISYCGTSNVAHKAPTLGIPIRKSTRP 69
           HSS+  H   D+      +  VP+ V+S++   I      +N    +P  G+ +RKSTR 
Sbjct: 520 HSSLQAHFIPDLASSHVHDPFVPSGVASTSAANIPVDDILANAPSPSPYGGVILRKSTRM 579

Query: 70  IKPPSYPNDFHCSLLDCSSMPLSCFKN-PLQNYLSYSRLSPTFRNFVLNVSTHYEP 123
           I  P Y  D+HC+LL  SS   S F + P+ NY+SY  LS + R FVL+VS+  EP
Sbjct: 580 IHQPHYLKDYHCNLLAESSTHASTFASYPISNYISYHGLSDSHRQFVLSVSSQVEP 635

[Close]

BLAST of Sgr018929 vs. NCBI nr
Match: XP_022147777.1 (uncharacterized protein LOC111016631 isoform X2 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 3   ILASGVDHSSITTHVSDDVTLPLSSNDV----VPADVSSSTTIISYCGTSNVAHKAPTLG 62
           IL +   ++SI  H  D V +     DV      +D  SST+  +  G            
Sbjct: 88  ILVASSPNASILAH-GDSVHISNPPTDVPVHIYASDAPSSTSTDTSIG------------ 147

Query: 63  IPIRKSTRPIKPPSYPNDFHCSLLDCSSMPLSCFKNPLQNYLSYSRLSPTFRNFVLNVST 122
             I +S+R ++ PSY  D+HCSL   + +  S  K  LQ YLSY +LSP ++ F+LNVST
Sbjct: 148 --IWRSSRDVRRPSYLRDYHCSLAHSNVLASSPLKYKLQEYLSYDKLSPGYKRFILNVST 196

[Close]

BLAST of Sgr018929 vs. NCBI nr
Match: XP_022147774.1 (uncharacterized protein LOC111016631 isoform X1 [Momordica charantia] >XP_022147776.1 uncharacterized protein LOC111016631 isoform X1 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 3   ILASGVDHSSITTHVSDDVTLPLSSNDV----VPADVSSSTTIISYCGTSNVAHKAPTLG 62
           IL +   ++SI  H  D V +     DV      +D  SST+  +  G            
Sbjct: 88  ILVASSPNASILAH-GDSVHISNPPTDVPVHIYASDAPSSTSTDTSIG------------ 147

Query: 63  IPIRKSTRPIKPPSYPNDFHCSLLDCSSMPLSCFKNPLQNYLSYSRLSPTFRNFVLNVST 122
             I +S+R ++ PSY  D+HCSL   + +  S  K  LQ YLSY +LSP ++ F+LNVST
Sbjct: 148 --IWRSSRDVRRPSYLRDYHCSLAHSNVLASSPLKYKLQEYLSYDKLSPGYKRFILNVST 196

[Close]

BLAST of Sgr018929 vs. NCBI nr
Match: PNX84823.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium pratense])

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-07
Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 10  HSSITTHVSDDVTLPLSSNDVVPADVSSSTTIISYCGTSNVAHKAPTLG-IPIRKSTRPI 69
           ++ + THVSD      S +   P               +  +H +P+L  IP+R+STRP 
Sbjct: 137 NTPLATHVSDSYIESASPSPNTP---------------NTNSHNSPSLSPIPLRRSTRPS 196

Query: 70  KPPSYPNDFHCSLLDCS--------SMPLSCFKNPLQNYLSYSRLSPTFRNFVLNVSTHY 123
            PP Y  DFHCSLL  S        S+  S  K PL +++SY  LS + ++F  N+ST  
Sbjct: 197 NPPGYLQDFHCSLLTTSNNDSIPSTSISSSDCKYPLSSFISYQNLSTSHKHFAFNISTLT 243

[Close]

BLAST of Sgr018929 vs. ExPASy TrEMBL
Match: A0A2N9F376 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9454 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 12  SITTHVSDDVTLPLSSNDVVPADVSSSTTIISYCGTSNVAHKAPTLGIPIRKSTRPIKPP 71
           S+   +SD   +P      +P D S+ T   S    S +A  +PTL  P+RKS+R IKPP
Sbjct: 195 SLPVTMSDSPAIPTPPPHTIPPDSSTET---SSPIASPIASSSPTLHPPVRKSSRLIKPP 254

Query: 72  SYPNDFHCSLLDCSS---MPLSCFKNPLQNYLSYSRLSPTFRNFVLNVSTHYEP 123
           SY  D+H +L+  SS    P S   +P+QN LSYS LS + + F L +ST  EP
Sbjct: 255 SYLQDYHYNLIFSSSPSLSPSSDVVHPIQNTLSYSHLSDSHKAFTLTISTPVEP 305

[Close]

BLAST of Sgr018929 vs. ExPASy TrEMBL
Match: A0A5J5AMM8 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_005050 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 20  DVTLPLSSNDVVPA---DVSSSTT-----IISYCGTSNVA----HKAPTLGIPIRKSTRP 79
           D+ LP S  DV PA     SSS T      + +     VA      A +  I  RKSTR 
Sbjct: 167 DLVLPHSGLDVPPALFVSPSSSVTQEEFEALDFVQDIQVAPLPDTPATSAVIHARKSTRH 226

Query: 80  IKPPSYPNDFHCSLLDCSSMPLSCFKNPLQNYLSYSRLSPTFRNFVLNVSTHYEP 123
           IKPPSY  D+HCSL+   ++P S    PL  +LSY+ LS + R FVL +S+H+EP
Sbjct: 227 IKPPSYLLDYHCSLVSHKTLPDSTSSYPLSKFLSYNSLSASHRAFVLAISSHFEP 281

[Close]

BLAST of Sgr018929 vs. ExPASy TrEMBL
Match: A0A2N9FYF9 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20170 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 5    ASGVDHSSITTHVSDDVTLPLSSNDVVPADVSSSTTIISYCGTSNVAHKAPTLGIPIRKS 64
            AS   H +    VS   T P+SS        S S+T       S +A  +PTL  P+RKS
Sbjct: 1282 ASSSHHQAAINKVSSS-TFPVSSITEPHIAHSDSSTETPSPIASPIAASSPTLYPPVRKS 1341

Query: 65   TRPIKPPSYPNDFHCSLLDCSS---MPLSCFKNPLQNYLSYSRLSPTFRNFVLNVSTHYE 123
             R +KPPSY  D+HC+L+  SS    P S   +P+QN LSYS LS + + F L + T  E
Sbjct: 1342 FRLVKPPSYLQDYHCNLISSSSSSPSPSSDVIHPIQNTLSYSHLSDSHKAFTLAILTPIE 1401

[Close]

BLAST of Sgr018929 vs. ExPASy TrEMBL
Match: A0A2N9FBS5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12437 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.6e-08
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 22  TLPLSSNDVVPADVSSSTTIISYCGTSNVAHKAPTLGIPIRKSTRPIKPPSYPNDFHCSL 81
           +LPL+S+   P D  S+ +I      S +   AP+  +PIR+S+R +KPPSY  D+HCSL
Sbjct: 560 SLPLTSSPPSP-DTHSAHSI----SDSTIPLAAPSSTLPIRQSSRVVKPPSYLQDYHCSL 619

Query: 82  ---LDCSSMPLSCFKNPLQNYLSYSRLSPTFRNFVLNVSTHYEP 123
              L  S+MP +    P+Q+ LSYS LS + + F L +ST  EP
Sbjct: 620 STSLPTSNMPYAHTAYPIQHTLSYSNLSASHKAFTLAISTPNEP 658

[Close]

BLAST of Sgr018929 vs. ExPASy TrEMBL
Match: A0A2N9GV85 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31315 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.6e-08
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 22  TLPLSSNDVVPADVSSSTTIISYCGTSNVAHKAPTLGIPIRKSTRPIKPPSYPNDFHCSL 81
           +LPL+S+   P D  S+ +I      S +   AP+  +PIR+S+R +KPPSY  D+HC+L
Sbjct: 819 SLPLTSSPPSP-DTHSAHSI----SDSTIPPAAPSSTLPIRQSSRVVKPPSYLQDYHCNL 878

Query: 82  ---LDCSSMPLSCFKNPLQNYLSYSRLSPTFRNFVLNVSTHYEP 123
              L  S+MP +    P+Q+ LSYS LS + + F L +ST  EP
Sbjct: 879 STSLPTSNMPYAHIAYPIQHTLSYSNLSASHKAFTLAISTPTEP 917

The following BLAST results are available for this feature:

BLAST of Sgr018929 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA8530341.1	3.4e-08	42.61	hypothetical protein F0562_005050 [Nyssa sinensis]	[more]
XP_031259419.1	3.7e-07	38.79	uncharacterized protein LOC116117549 [Pistacia vera]	[more]
XP_022147777.1	3.7e-07	36.29	uncharacterized protein LOC111016631 isoform X2 [Momordica charantia]	[more]
XP_022147774.1	3.7e-07	36.29	uncharacterized protein LOC111016631 isoform X1 [Momordica charantia] >XP_022147...	[more]
PNX84823.1	4.8e-07	35.25	retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium ...	[more]

BLAST of Sgr018929 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr018929 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9F376	1.9e-09	41.23	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A5J5AMM8	1.6e-08	42.61	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_005050 PE=4 SV=1	[more]
A0A2N9FYF9	2.1e-08	40.50	Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20170 PE=4 SV=1	[more]
A0A2N9FBS5	3.6e-08	42.31	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12437 PE=4 SV=1	[more]
A0A2N9GV85	3.6e-08	41.35	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]

BLAST of Sgr018929 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr018929.1	Sgr018929.1	mRNA