Sgr018506 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr018506
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationtig00153204: 745455 .. 746369 (-)
RNA-Seq ExpressionSgr018506
SyntenySgr018506
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCCTTTGGAATAAAGATGGATAAGTGGGAAATTGAACCTGAAACTGATGAAATTCAGGGAGAACATGGAACTGGTCACTATACCGAGGTGAGACATGACTGCGATTTAAGATTCAATCTACCCTCAATTTTTCAGTAAAGTCGGAAAATTTTAAATTATTAAGGACAAAGGGAACTAGTTATATATAAAAAGACATTTTGTATAATTTAATATTTTATTCATATTCAATTGTTTATCTATGATCAACAGTCTACTCCCATAAAAAAAAAAAAAAAAGGTGGTTTATATATATTTATAATCGTCCTTCATTTCTAAAGATTTTAAGCGGCAAAATTTTAGATTGTAATTTTTTATGTATATAATCTTTCAATTCTAAAAATTATAGAGAGGAAATTTAGAGAAAAAACTTCAAAATCTTAATTTATATATATTTTAAATTTTATGGAAAAATAAATTTTTGGTCCCTAAAGTTTGGATTTGGTGTTTATTTGATCTTCATGTTTCAAAAGGAATACTTTAGCCCCTCAAGTTTAAAAAATGGTTCAAAATAATCCCTGAGCTCTGTTGACAGTTAGTTGACTAACGGAAAAATGACGTGACCATTACTTGCTAATTGAACAGTGATAGGTACTCCTTCAACTAAAATAAACGAAAATTTCCCTCCTCCTTCCTGGCTCTAGCTACCCCTCAAAGTAATTAATATCAACACAAAGCATAACTTATTTGATGCCATTTGAATGACAACTAAAGAGAATCTTACTTGCAAAGTGAATGACGTATTAAGCCCAGGAGCAGGCTTGGGCTTGGGATCAAGCTGATCAGTCTCGTCATCAGTCTCGGATTGGAGAGCAGGATCAAGCTGATCAGTCTCGTTATCACCATTGGATTGGGGCGCAGGATCGGGCTTGA

mRNA sequence

ATGTTTGCCTTTGGAATAAAGATGGATAAGTGGGAAATTGAACCTGAAACTGATGAAATTCAGGGAGAACATGGAACTGGTCACTATACCGAGGAGCAGGCTTGGGCTTGGGATCAAGCTGATCAGTCTCGTCATCAGTCTCGGATTGGAGAGCAGGATCAAGCTGATCAGTCTCGTTATCACCATTGGATTGGGGCGCAGGATCGGGCTTGA

Coding sequence (CDS)

ATGTTTGCCTTTGGAATAAAGATGGATAAGTGGGAAATTGAACCTGAAACTGATGAAATTCAGGGAGAACATGGAACTGGTCACTATACCGAGGAGCAGGCTTGGGCTTGGGATCAAGCTGATCAGTCTCGTCATCAGTCTCGGATTGGAGAGCAGGATCAAGCTGATCAGTCTCGTTATCACCATTGGATTGGGGCGCAGGATCGGGCTTGA

Protein sequence

MFAFGIKMDKWEIEPETDEIQGEHGTGHYTEEQAWAWDQADQSRHQSRIGEQDQADQSRYHHWIGAQDRA
Homology
[Close]
BLAST of Sgr018506 vs. NCBI nr
Match: GEX24111.1 (hypothetical protein CTI12_AA053040 [Tanacetum cinerariifolium])

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 1   MFAFGIKMDKWEIEPETDEIQGEHGTGHYTEEQAWAWDQ 40
           M AFGIKMDK  +EP TDEI+G+HGTGHYT   + A+DQ
Sbjct: 115 MLAFGIKMDKHVLEPGTDEIRGKHGTGHYTGGNSGAFDQ 153

[Close]
BLAST of Sgr018506 vs. NCBI nr
Match: GFY94554.1 (hypothetical protein Acr_09g0010000 [Actinidia rufa] >GFY94559.1 hypothetical protein Acr_09g0010050 [Actinidia rufa] >GFZ12091.1 hypothetical protein Acr_23g0004760 [Actinidia rufa] >GFZ18752.1 hypothetical protein Acr_27g0004910 [Actinidia rufa])

HSP 1 Score: 53.5 bits (127), Expect = 8.4e-04
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1   MFAFGIKMDKWEIEPETDEIQGEHGTGHYT 31
           MFAFG+KMD+  +EP TDEI+G+HGTGHYT
Sbjct: 106 MFAFGMKMDEQALEPGTDEIRGKHGTGHYT 135

[Close]
BLAST of Sgr018506 vs. NCBI nr
Match: GFY94550.1 (hypothetical protein Acr_09g0009960 [Actinidia rufa])

HSP 1 Score: 53.5 bits (127), Expect = 8.4e-04
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MFAFGIKMDKWEIEPETDEIQGEHGTGHYT 31
          MFAFG+KMD+  +EP TDEI+G+HGTGHYT
Sbjct: 58 MFAFGMKMDEQALEPGTDEIRGKHGTGHYT 87

[Close]
BLAST of Sgr018506 vs. NCBI nr
Match: GFS28570.1 (hypothetical protein Acr_00g0002560 [Actinidia rufa])

HSP 1 Score: 53.5 bits (127), Expect = 8.4e-04
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MFAFGIKMDKWEIEPETDEIQGEHGTGHYT 31
          MFAFG+KMD+  +EP TDEI+G+HGTGHYT
Sbjct: 38 MFAFGMKMDEQALEPGTDEIRGKHGTGHYT 67

[Close]
BLAST of Sgr018506 vs. ExPASy TrEMBL
Match: A0A7J0F784 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_09g0010000 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1   MFAFGIKMDKWEIEPETDEIQGEHGTGHYT 31
           MFAFG+KMD+  +EP TDEI+G+HGTGHYT
Sbjct: 106 MFAFGMKMDEQALEPGTDEIRGKHGTGHYT 135

[Close]
BLAST of Sgr018506 vs. ExPASy TrEMBL
Match: A0A7J0F794 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_09g0009960 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MFAFGIKMDKWEIEPETDEIQGEHGTGHYT 31
          MFAFG+KMD+  +EP TDEI+G+HGTGHYT
Sbjct: 58 MFAFGMKMDEQALEPGTDEIRGKHGTGHYT 87

[Close]
BLAST of Sgr018506 vs. ExPASy TrEMBL
Match: A0A7J0D6W2 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0002560 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MFAFGIKMDKWEIEPETDEIQGEHGTGHYT 31
          MFAFG+KMD+  +EP TDEI+G+HGTGHYT
Sbjct: 38 MFAFGMKMDEQALEPGTDEIRGKHGTGHYT 67

[Close]
BLAST of Sgr018506 vs. ExPASy TrEMBL
Match: A0A2N9GIJ9 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26896 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MFAFGIKMDKWEIEPETDEIQGEHGTGHYT 31
          MFAFG+KMD+  +EP TDEI+G+HGTGHYT
Sbjct: 50 MFAFGMKMDEQALEPGTDEIRGKHGTGHYT 79

The following BLAST results are available for this feature:
BLAST of Sgr018506 vs. NCBI nr
Match NameE-valueIdentityDescription
GEX24111.11.7e-0466.67hypothetical protein CTI12_AA053040 [Tanacetum cinerariifolium][more]
GFY94554.18.4e-0473.33hypothetical protein Acr_09g0010000 [Actinidia rufa] >GFY94559.1 hypothetical pr... [more]
GFY94550.18.4e-0473.33hypothetical protein Acr_09g0009960 [Actinidia rufa][more]
GFS28570.18.4e-0473.33hypothetical protein Acr_00g0002560 [Actinidia rufa][more]
BLAST of Sgr018506 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sgr018506 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J0F7844.1e-0473.33Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_09g0010000 PE=4 SV=1[more]
A0A7J0F7944.1e-0473.33Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_09g0009960 PE=4 SV=1[more]
A0A7J0D6W24.1e-0473.33Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0002560 PE=4 SV=1[more]
A0A2N9GIJ94.1e-0473.33Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
BLAST of Sgr018506 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr018506.1Sgr018506.1mRNA