Sgr018498 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr018498
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Ty3-gypsy retrotransposon protein
Location	tig00153204: 658711 .. 659976 (-)
RNA-Seq Expression	Sgr018498
Synteny	Sgr018498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCTCACATTGTCACTACTGCATGATACCCAATGGACGATTGCCACCATCATGTCTGAACAAACCATTGGGATGCATAAGGTGATATCTGCTTTGGAGTTGGAAGAATTAGTTCAAAAGAGGGAACTTTTGAGGAAGAGGAACAATCATTGGGAGGAAAAACGACAAGCTAGGTGAGTTCATCCTAGACTAAAGATGGTGAAACTCGTAAAAGAAAAACCATGAAGAATTTCTCGAAAAAGGAGCAAGTTTAAGGTGGAAATATTAGTGCTTTAAAGGGAAAATCCAAATTCATGGATGTTTAGAGCTGAATGTTACTTAGAAATCTAGAAGTTAACCAATGAAACTCTCGATGGTTGTGGTGAGTTTCAACGTAGAAGTACTATCATGGTATCAATGGGCAAAGAAAGAAGGAGATTCAAGATTGGAAGGACTAAAAATTCAACTACTTTTGCATTTTCATCCATCATAAGAAAGGCAACCTTTGCAAATGTTTCTTGGCGATCAAGTAGGGCACACAATGGCAGAGTATGAGAAATGTTTTGAGACGTTGGCGACCCCTCTTTCACATATTTTTATGAGGTTCTACATAGTACATCTATAAATGGGTTAGGTCCAGTCATATAAGTTAAGATTCGTTATTGCTTGAAATTTATTGAGTTAGAAGAAATTATAAAAGTAGTCCTATTAGTAGAAGATAGAAGCAGGCTATACAGGCTTCTTAAAAGCCCAATGGTAATGGAGCAGCAAAGACAATTTAACTAGATCAAAAGAATATAGTAAAGAAAAACCCGAGATATTTTCCCAACTCGAACCATAACAATTGGGGAAAAGTTAATAGACCCTTGTAGAGACACTCTCTACAATTGCCTTTTAGAAGCTGAATCGTAGTTGAGGAAGGAAAAAGGCTTATGCTACCACTATGATGAGAAGTTTTTAGTAGGTCCACGAGGGCAAAATTTGAAAGCTAAATGTCTTGTTGGTTTAAGACGATGGGGAGAAAGAGGAGGACTCTTTTGTGGATTCACAAAGAGCCATGCAACCAAAGTAGGGAATGTCGTTGAACTTTCAATGAATTTGACGGTGGGTCTATCCACGTTGGGAACGATGAAGTTAAAGGGGAAGATTAATCAAATTGAGGTCCTCGTGCTCATTAACTGTGGGACGATGCATAATTTTGTTTCCCAACAGCTAATTAATAAGTTGAAGCTTCTTTGGACAAATACATCCAACTATGGTGTTGTTATGACTTATGAGTGCTAG

mRNA sequence

ATGTTGCTCACATTGTCACTACTGCATGATACCCAATGGACGATTGCCACCATCATGTCTGAACAAACCATTGGGATGCATAAGGTGATATCTGCTTTGGAGTTGGAAGAATTAGTTCAAAAGAGGGAACTTTTGAGGAAGAGGAACAATCATTGGGAGGAAAAACGACAAGCTAGACGATGGGGAGAAAGAGGAGGACTCTTTTGTGGATTCACAAAGAGCCATGCAACCAAAGTAGGGAATGTCGTTGAACTTTCAATGAATTTGACGGTGGGTCTATCCACGTTGGGAACGATGAAGTTAAAGGGGAAGATTAATCAAATTGAGGTCCTCGTGCTCATTAACTGTGGGACGATGCATAATTTTGTTTCCCAACAGCTAATTAATAAGTTGAAGCTTCTTTGGACAAATACATCCAACTATGGTGTTGTTATGACTTATGAGTGCTAG

Coding sequence (CDS)

ATGTTGCTCACATTGTCACTACTGCATGATACCCAATGGACGATTGCCACCATCATGTCTGAACAAACCATTGGGATGCATAAGGTGATATCTGCTTTGGAGTTGGAAGAATTAGTTCAAAAGAGGGAACTTTTGAGGAAGAGGAACAATCATTGGGAGGAAAAACGACAAGCTAGACGATGGGGAGAAAGAGGAGGACTCTTTTGTGGATTCACAAAGAGCCATGCAACCAAAGTAGGGAATGTCGTTGAACTTTCAATGAATTTGACGGTGGGTCTATCCACGTTGGGAACGATGAAGTTAAAGGGGAAGATTAATCAAATTGAGGTCCTCGTGCTCATTAACTGTGGGACGATGCATAATTTTGTTTCCCAACAGCTAATTAATAAGTTGAAGCTTCTTTGGACAAATACATCCAACTATGGTGTTGTTATGACTTATGAGTGCTAG

Protein sequence

MLLTLSLLHDTQWTIATIMSEQTIGMHKVISALELEELVQKRELLRKRNNHWEEKRQARRWGERGGLFCGFTKSHATKVGNVVELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTNTSNYGVVMTYEC

Homology

[Close]

BLAST of Sgr018498 vs. NCBI nr
Match: KAA0054240.1 (disease resistance protein [Cucumis melo var. makuwa] >TYK15030.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 82  VVELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTNTSNY 141
           VVELS+N  VGLS  GTMK+KGKI++  V+VLI+CG MHNF+S++L+  L L    T+NY
Sbjct: 131 VVELSINSVVGLSKPGTMKMKGKIDEEAVIVLIDCGEMHNFISEKLVTSLNLPMMETANY 190

Query: 142 GVVMTYE 149
           GV +  E
Sbjct: 191 GVTLGSE 197

[Close]

BLAST of Sgr018498 vs. NCBI nr
Match: KAA0060465.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18550.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-10
Identity = 36/69 (52.17%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 79  VGNVVELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTNT 138
           V  VVELS+N  VGL+  GTMK++GK+   EV+VLI+CG +HNF+S++L+N++KL    T
Sbjct: 283 VNAVVELSINSVVGLTNPGTMKVRGKLQGEEVVVLIDCGAIHNFISEKLVNEMKLHSKET 342

Query: 139 SNYGVVMTY 148
           S+YGV++ +
Sbjct: 343 SHYGVILGF 351

[Close]

BLAST of Sgr018498 vs. NCBI nr
Match: KAA0062156.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-10
Identity = 34/63 (53.97%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 83  VELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTNTSNYG 142
           +ELS+N  VGL+  GTMK+KGKI + EV++LI+CG  HNF++++L++KLKL    T NYG
Sbjct: 14  IELSINSVVGLTNPGTMKVKGKIGEEEVVILIDCGATHNFIAEKLVDKLKLPMRETPNYG 73

Query: 143 VVM 146
           V++
Sbjct: 74  VIL 76

[Close]

BLAST of Sgr018498 vs. NCBI nr
Match: TYK28130.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-10
Identity = 33/63 (52.38%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 83  VELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTNTSNYG 142
           +ELS+N  VGL+  GTMK+KG++ + EV+VLI+CG  HNF++++L++KL+LL   T NYG
Sbjct: 138 IELSINSVVGLTNSGTMKVKGRLGEEEVVVLIDCGATHNFIAEKLVDKLQLLMRETPNYG 197

Query: 143 VVM 146
           V++
Sbjct: 198 VIL 200

[Close]

BLAST of Sgr018498 vs. NCBI nr
Match: KAA0037088.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06556.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-10
Identity = 34/68 (50.00%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 78  KVGNVVELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTN 137
           +V  +V+LS+N  VGL+  GT K+KGK+ + EV+V+I+CG  HNF+S +L+ +LK+  T 
Sbjct: 393 EVSPIVDLSLNSVVGLTAPGTFKIKGKVEEREVVVMIDCGATHNFISLKLVEELKVPTTE 452

Query: 138 TSNYGVVM 146
           T+NYGV+M
Sbjct: 453 TTNYGVIM 460

[Close]

BLAST of Sgr018498 vs. ExPASy TrEMBL
Match: A0A5A7UG48 (Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00710 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.5e-11
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 82  VVELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTNTSNY 141
           VVELS+N  VGLS  GTMK+KGKI++  V+VLI+CG MHNF+S++L+  L L    T+NY
Sbjct: 131 VVELSINSVVGLSKPGTMKMKGKIDEEAVIVLIDCGEMHNFISEKLVTSLNLPMMETANY 190

Query: 142 GVVMTYE 149
           GV +  E
Sbjct: 191 GVTLGSE 197

[Close]

BLAST of Sgr018498 vs. ExPASy TrEMBL
Match: A0A5A7V3M8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00520 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 36/69 (52.17%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 79  VGNVVELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTNT 138
           V  VVELS+N  VGL+  GTMK++GK+   EV+VLI+CG +HNF+S++L+N++KL    T
Sbjct: 283 VNAVVELSINSVVGLTNPGTMKVRGKLQGEEVVVLIDCGAIHNFISEKLVNEMKLHSKET 342

Query: 139 SNYGVVMTY 148
           S+YGV++ +
Sbjct: 343 SHYGVILGF 351

[Close]

BLAST of Sgr018498 vs. ExPASy TrEMBL
Match: A0A5D3C895 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00130 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 34/68 (50.00%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 78  KVGNVVELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTN 137
           +V  +V+LS+N  VGL+  GT K+KGK+ + EV+V+I+CG  HNF+S +L+ +LK+  T 
Sbjct: 393 EVSPIVDLSLNSVVGLTAPGTFKIKGKVEEREVVVMIDCGATHNFISLKLVEELKVPTTE 452

Query: 138 TSNYGVVM 146
           T+NYGV+M
Sbjct: 453 TTNYGVIM 460

[Close]

BLAST of Sgr018498 vs. ExPASy TrEMBL
Match: A0A5A7V6V6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005270 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 34/63 (53.97%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 83  VELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTNTSNYG 142
           +ELS+N  VGL+  GTMK+KGKI + EV++LI+CG  HNF++++L++KLKL    T NYG
Sbjct: 14  IELSINSVVGLTNPGTMKVKGKIGEEEVVILIDCGATHNFIAEKLVDKLKLPMRETPNYG 73

Query: 143 VVM 146
           V++
Sbjct: 74  VIL 76

[Close]

BLAST of Sgr018498 vs. ExPASy TrEMBL
Match: A0A5D3DY10 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00360 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 33/63 (52.38%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 83  VELSMNLTVGLSTLGTMKLKGKINQIEVLVLINCGTMHNFVSQQLINKLKLLWTNTSNYG 142
           +ELS+N  VGL+  GTMK+KG++ + EV+VLI+CG  HNF++++L++KL+LL   T NYG
Sbjct: 138 IELSINSVVGLTNSGTMKVKGRLGEEEVVVLIDCGATHNFIAEKLVDKLQLLMRETPNYG 197

Query: 143 VVM 146
           V++
Sbjct: 198 VIL 200

The following BLAST results are available for this feature:

BLAST of Sgr018498 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054240.1	2.0e-10	56.72	disease resistance protein [Cucumis melo var. makuwa] >TYK15030.1 peroxidase 64 ...	[more]
KAA0060465.1	2.6e-10	52.17	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18550.1 ty3-gyp...	[more]
KAA0062156.1	4.4e-10	53.97	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK28130.1	4.4e-10	52.38	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037088.1	4.4e-10	50.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06556.1 ty3-gyp...	[more]

BLAST of Sgr018498 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr018498 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UG48	9.5e-11	56.72	Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7V3M8	1.2e-10	52.17	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C895	2.1e-10	50.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V6V6	2.1e-10	53.97	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DY10	2.1e-10	52.38	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Sgr018498 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr018498.1	Sgr018498.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003677	DNA binding