Sgr018146 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr018146
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	nuclear pore complex protein NUP62
Location	tig00153113: 375713 .. 379056 (+)
RNA-Seq Expression	Sgr018146
Synteny	Sgr018146

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATCCATAAGAGAATTCGTGGAAGAATTTTATTGGTTGAACGTCTGTAAATAACCTTAAGTGAATATGAGTCCAACAAGTTGCCTACTACGTTGAACTGGAGTGAAATACAAGATCAGGTAGACCGATACCCTTTGGGAGGATTAAGTTGTAAGCACTAAAGGTTAGAAAATCAATTGGGCAGGAACACCGACAAACCTTTTTCAAATAGGAACCTCAAGCATGAACTCAGTTTGAATAACAATTTTCTTGTCCCCCGGGGAGGGGGAGGTGGGGATAAAGGTATGAGATCGAAGGCAATAAGTTCAACATTTCAGCACCTTTGGATGTTGATCTGCTTGACTGGTAATTATGATAGTGACTTGTATGACCAGTTGGTCATAGACTCATAGGCTTATTGTCTATGAAATCCAACCCCTTTGATGAACTACACAATGTTTTGGATGATTAATAATTCCACAACCGATTAGGACACAAAGAATCACCCTTCACTGATTTTAATTTTAGGCATTGCACCAAAGGTTAAAATTGCAATCTCTTGTTTTCAATTTTAATTTTGTTGCAGGTATGAGCAAGCTGAATATATAGAGCGGGAACTAGAGCAGATGACCGAACAGATCAAATCAATTATCCAGACCCTAAATGCCAACCAGGTAAAAGGATAATGGCTAAATAATTCCATTTCTTGCCTTGGATTTGCCTCTACATGGTTATAGATGCTCTATGTATCTATTGCTTCATCTAGGGAGGAGAACTTGATGTGATTGATGGGATGACACCGTTAGATGCAGTTGTCCGAATTTTGAACAACCAATTAAGTTCTTTAATGTGGATCGATGAAAAGGTTAGTGTCTCTTATATATGTCTTTATCCATATGCGAAACCATTTCCAATGATGAGGACATTGGTATATTAGCCTCCAAAGTGTAAAGGCATTTACATCATTCTCTATGTTATTAGATCTTCATCTGCGTTGCATTACTCTTGATGAACTCTTTAGATTTATTTCTGAGATGCAATAATATATTTCAGTTGATTTTTAATATCCTGTGAAATAATGAATAGGAGAACCATATGTAGTTATTAGAGTGTGTTTGGTATGACTTTTAGAATAGTAAAAAGTGATTTAAACTAATTTAAAGTACCTTTTAAAATCATTATATTGGACTATATGGCTAAAAGTAGTTTTGAAAATTCTAAAATTCTTAAAAGCACGTAATATTACTCTCAAAAGTGATCCAAAATTCACCTTATATTTTGATTAATAATCCCAAACATTAATCATTGCACCATTAAGTTTGTCTGAGGAGCGCTCTTGCTCGTACGCATACAGTCAAGATCTCGCCTTGGATGTTACCACATGCTCTACCCCTAGATAGCCAAACTACTACACAACTCCGGCTAATTACTAGATTTCCCTATCATGCAACGACTCTTTCAGTCGCATGATCTGGTGCAAGCTCCTCACCACCTTCCTTAATGGGACACACCCCATGTTCAACTGTAAAGCTGTAAATCAGAATGTCATCAAAGAAGGCCAATTCAAACTTTTGGAGAAAAGGCCGTAATTCATCGTTCATAAGTGATCTAAAGGTTCAAGGGACATTTTCTGACCCAATCATATTTTGGAACTCGCAGTAACGCTAATAAGTACAGAAAGTAGTCTTATGCACATCCTCCTTCATTAGTCTAATCTAATGATACCTTGATTTTAAACTTGGGAAACTAAGAATATGCCTAGAGATGAATCTAAGAATTTAAATTTGTAGGGGCTAAATATGATAAAATATAACCATAATAATGAAACTATTAATAAATATTATATACTCTAAATCAAAATTGTTTGTGTGTGTGTTTCTTTTAAAGAATAAAATTATTTAGTAATTTATTTTACATTTCAACTTCTAGAAGTTTCTCTTTTGATGTATCCAATCAAATAATCTATAAAGTAAGGCTTTTATTGTACTTAATTATTATTTTTTTTAATGATTTAAGTATGTTAAAAGGATAGTTTTGGAATTATTCTAGCTACAATGAAATCAATACAGGACATGTGGTTGTCAAAATAATCACGGTTGAAAATTCAATACATTGCAAAATAGAAAGAGGTGTAGGTAGATGAACTCACACCGGTATGGTATCAACCAAAACTGCTCCAACATTGAAGTCAGTGCTGAGTGAAGAATTGGTAGAGTACAACAAGAAATTACGATTGTTGATAATCCACCAAGGTACTTGGCTCTTTATGTGAAAGTGATACGTTTAGGTGAAAGATGAAGATTACGATTGCTAGATCCACTTCAATTATTAGTTCAAGATTCTCTCAGAATCCACAGTGTACGTGGGAATCCAGCTTGGATCAAGTCACCCAGTGAGCATTTCTTTAAGTGAACTTTGTGGAGTGTTATGTATGACTAAACACGGCATGAGATGTAAGGTGTGCTATATTCTGTGTGGGACTTTTGCCGTGAAAATGAGCATGGTGAATGGCTATAGGAAGGGATGGTTTCTGAGGGGCTGGACATTTCATTTGACTGACAATCGGTTGCTTGTTGGGTTGAAAAAATCACTTGACTACACAACATAATGCGTGTAAATTGAGGAATGCTGCTCAATTTGAAGAGCTGAGCTCGCTTGGTCTATTATTCGAGAAGGTTGAGGAACCGTGCTTAATTAGGAGTATAAGACGAGTTCAGAAGCTTCGCTGCATCCTTTCAACTTGGGCTCAGCTGAAGGTGAAATTGTGTTCAGTTGGGATATTAGTTAGAGCTTGGCCTTAAGAGAGATTTTGTCCACTGAAGAAACATCAACTAATCGATCAAGCTTATAGTTTCTACTAATTACCATACAGAAAAGGTAATATAAGCATTATTAAGATTCAAATATTGCTTGGGTTTCACAAATTCGGACGTGGATATGCAGGCAATATCTTAAGACAAATTTGAAGAATAAAACTATACTAATAAGTACATTAGAAGACGCTCCAATAACAATTGAATATTTGATTTAAATTTCTAAGAGAAGATAGAAAAATTGGATGATTAAAGGTTTAGTAGCCTATTTGAACCATGCTTCTATTTTACTTTATTTTATTTTTCTTCTTATTTTGCATTTGTATTGACTTGGGAGAAATTATCTTGTATGGCTAGAAGAATGTAGCCGATACTTTTGCGCTGTTAGAGATGAATAAGAGAAATTAAGAAAATGTGTTTTTCCGAGTTTTGACATTAATCTTCGACAGGCGGAAGAGTTTTCTTCACGTCTTCAGAAGCTTGCAGCAACGCAGGGTCCTGCTGCAGATCGTGAATTGTTGGGTCAGAAGTTTTGGATGTCTTGA

mRNA sequence

ATGACTGAGATCCATAAGAGAATTCGTGGAAGAATTTTATTGGTTGAACGTCTGTATGAGATCGAAGGCAATAAGTTCAACATTTCAGCACCTTTGGATGTTGATCTGCTTGACTGGTATGAGCAAGCTGAATATATAGAGCGGGAACTAGAGCAGATGACCGAACAGATCAAATCAATTATCCAGACCCTAAATGCCAACCAGGGAGGAGAACTTGATGTGATTGATGGGATGACACCGTTAGATGCAGTTGTCCGAATTTTGAACAACCAATTAAGTTCTTTAATGTGGATCGATGAAAAGGCGGAAGAGTTTTCTTCACGTCTTCAGAAGCTTGCAGCAACGCAGGGTCCTGCTGCAGATCGTGAATTGTTGGGTCAGAAGTTTTGGATGTCTTGA

Coding sequence (CDS)

ATGACTGAGATCCATAAGAGAATTCGTGGAAGAATTTTATTGGTTGAACGTCTGTATGAGATCGAAGGCAATAAGTTCAACATTTCAGCACCTTTGGATGTTGATCTGCTTGACTGGTATGAGCAAGCTGAATATATAGAGCGGGAACTAGAGCAGATGACCGAACAGATCAAATCAATTATCCAGACCCTAAATGCCAACCAGGGAGGAGAACTTGATGTGATTGATGGGATGACACCGTTAGATGCAGTTGTCCGAATTTTGAACAACCAATTAAGTTCTTTAATGTGGATCGATGAAAAGGCGGAAGAGTTTTCTTCACGTCTTCAGAAGCTTGCAGCAACGCAGGGTCCTGCTGCAGATCGTGAATTGTTGGGTCAGAAGTTTTGGATGTCTTGA

Protein sequence

MTEIHKRIRGRILLVERLYEIEGNKFNISAPLDVDLLDWYEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRLQKLAATQGPAADRELLGQKFWMS

Homology

[Close]

BLAST of Sgr018146 vs. NCBI nr
Match: XP_022156652.1 (nuclear pore complex protein NUP62, partial [Momordica charantia])

HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42
Identity = 102/138 (73.91%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MTEIHKRIRGRILL-----VERLYEIE-GNKFNISAPLDVDLLDWYEQAEYIERELEQMT 60
           + E H++   + LL      ER+Y+ E G   +  A    D +  YEQAEYIERELEQMT
Sbjct: 461 LIETHQQEVDKALLSVEEDAERIYKDERGLLLDDEAASTRDAM--YEQAEYIERELEQMT 520

Query: 61  EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRLQKLAA 120
           EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSR+QK+AA
Sbjct: 521 EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKIAA 580

Query: 121 TQGPAADRELLGQKFWMS 133
           TQGPAADRELLGQKFWMS
Sbjct: 581 TQGPAADRELLGQKFWMS 596

[Close]

BLAST of Sgr018146 vs. NCBI nr
Match: XP_022142426.1 (nuclear pore complex protein NUP62-like isoform X1 [Momordica charantia])

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-42
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 40  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 99
           YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID
Sbjct: 632 YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 691

Query: 100 EKAEEFSSRLQKLAATQGPAADRELLGQKFWMS 133
           EKAEEFSSR+QK+AATQGPAADRELLGQKFWMS
Sbjct: 692 EKAEEFSSRIQKIAATQGPAADRELLGQKFWMS 724

[Close]

BLAST of Sgr018146 vs. NCBI nr
Match: XP_022142427.1 (nuclear pore complex protein NUP62-like isoform X2 [Momordica charantia])

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-42
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 40  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 99
           YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID
Sbjct: 581 YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 640

Query: 100 EKAEEFSSRLQKLAATQGPAADRELLGQKFWMS 133
           EKAEEFSSR+QK+AATQGPAADRELLGQKFWMS
Sbjct: 641 EKAEEFSSRIQKIAATQGPAADRELLGQKFWMS 673

[Close]

BLAST of Sgr018146 vs. NCBI nr
Match: XP_008459731.1 (PREDICTED: nuclear pore complex protein NUP62 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-42
Identity = 102/138 (73.91%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MTEIHKRIRGRILL-----VERLYEIE-GNKFNISAPLDVDLLDWYEQAEYIERELEQMT 60
           + E H++   + LL      ER+Y+ E G   +  A    D +  YEQAEYIERELEQMT
Sbjct: 626 LIETHQQEVDKALLSVEDDAERIYKDERGLLLDDEAASTRDAM--YEQAEYIERELEQMT 685

Query: 61  EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRLQKLAA 120
           EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSR+QKLAA
Sbjct: 686 EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAA 745

Query: 121 TQGPAADRELLGQKFWMS 133
           T+GPAADRELLGQKFWMS
Sbjct: 746 TEGPAADRELLGQKFWMS 761

[Close]

BLAST of Sgr018146 vs. NCBI nr
Match: XP_038874708.1 (nuclear pore complex protein NUP62 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-42
Identity = 100/131 (76.34%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 3   EIHKRIRGRILLVERLYEIE-GNKFNISAPLDVDLLDWYEQAEYIERELEQMTEQIKSII 62
           E+ K ++      ER+Y+ E G   +  A    D +  YEQAEYIERELEQMTEQIKSII
Sbjct: 585 EVDKALQSVEEDAERIYKDERGLLLDDEAASTRDAM--YEQAEYIERELEQMTEQIKSII 644

Query: 63  QTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRLQKLAATQGPAAD 122
           QTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSR+QKLAAT+GPAAD
Sbjct: 645 QTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATEGPAAD 704

Query: 123 RELLGQKFWMS 133
           RELLGQKFWMS
Sbjct: 705 RELLGQKFWMS 713

[Close]

BLAST of Sgr018146 vs. ExPASy Swiss-Prot
Match: Q8L7F7 (Nuclear pore complex protein NUP62 OS=Arabidopsis thaliana OX=3702 GN=NUP62 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.4e-33
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 40  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 99
           YEQ+E +ERELE MTEQI+SIIQ++NANQGGEL+ IDGM+PLD VVRILNNQLSSLMWID
Sbjct: 648 YEQSELVERELEHMTEQIRSIIQSVNANQGGELEAIDGMSPLDVVVRILNNQLSSLMWID 707

Query: 100 EKAEEFSSRLQKLAATQGPAADRELLGQKFWMS 133
           EKAEEFSSR+QK+ A QG   DREL+  K WMS
Sbjct: 708 EKAEEFSSRIQKI-ALQGSGGDRELMAPKHWMS 739

[Close]

BLAST of Sgr018146 vs. ExPASy Swiss-Prot
Match: Q7JXF5 (Nuclear pore glycoprotein p62 OS=Drosophila melanogaster OX=7227 GN=Nup62 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 25/85 (29.41%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 32  LDVDLLDWYEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQ 91
           +D++    Y   E ++ +L+QM+E +K II  LN    G+    D   P+  + +ILN  
Sbjct: 302 VDMERSQTYLMVENLDTQLKQMSEDLKEIIDNLNEANKGQ----DTTDPIIQIGKILNAH 361

Query: 92  LSSLMWIDEKAEEFSSRLQKLAATQ 117
           ++SL WI+ ++   S +L+ +   Q
Sbjct: 362 MNSLQWIESQSTNISKKLEDIGKIQ 382

[Close]

BLAST of Sgr018146 vs. ExPASy Swiss-Prot
Match: Q63850 (Nuclear pore glycoprotein p62 OS=Mus musculus OX=10090 GN=Nup62 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.5e-04
Identity = 25/72 (34.72%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 40  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 99
           Y+ AE I+ +L++M + +K II+ LN   GG  D  D   PL  + +ILN  + SL W+D
Sbjct: 438 YKLAENIDAQLKRMAQDLKDIIEHLNM-AGGPADTSD---PLQQICKILNAHMDSLQWVD 497

Query: 100 EKAEEFSSRLQK 112
           + +     R+++
Sbjct: 498 QSSALLQRRVEE 505

[Close]

BLAST of Sgr018146 vs. ExPASy Swiss-Prot
Match: P17955 (Nuclear pore glycoprotein p62 OS=Rattus norvegicus OX=10116 GN=Nup62 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.5e-04
Identity = 25/72 (34.72%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 40  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 99
           Y+ AE I+ +L++M + +K II+ LN   GG  D  D   PL  + +ILN  + SL W+D
Sbjct: 437 YKLAENIDAQLKRMAQDLKDIIEHLNM-AGGPADTSD---PLQQICKILNAHMDSLQWVD 496

Query: 100 EKAEEFSSRLQK 112
           + +     R+++
Sbjct: 497 QSSALLQRRVEE 504

[Close]

BLAST of Sgr018146 vs. ExPASy Swiss-Prot
Match: P37198 (Nuclear pore glycoprotein p62 OS=Homo sapiens OX=9606 GN=NUP62 PE=1 SV=3)

HSP 1 Score: 45.1 bits (105), Expect = 7.4e-04
Identity = 24/73 (32.88%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 40  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 99
           Y+ AE I+ +L++M + +K II+ LN + G   D  D   PL  + +ILN  + SL WID
Sbjct: 434 YKLAENIDAQLKRMAQDLKDIIEHLNTS-GAPADTSD---PLQQICKILNAHMDSLQWID 493

Query: 100 EKAEEFSSRLQKL 113
           + +     +++++
Sbjct: 494 QNSALLQRKVEEV 502

[Close]

BLAST of Sgr018146 vs. ExPASy TrEMBL
Match: A0A6J1DSI7 (nuclear pore complex protein NUP62 OS=Momordica charantia OX=3673 GN=LOC111023501 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-42
Identity = 102/138 (73.91%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MTEIHKRIRGRILL-----VERLYEIE-GNKFNISAPLDVDLLDWYEQAEYIERELEQMT 60
           + E H++   + LL      ER+Y+ E G   +  A    D +  YEQAEYIERELEQMT
Sbjct: 461 LIETHQQEVDKALLSVEEDAERIYKDERGLLLDDEAASTRDAM--YEQAEYIERELEQMT 520

Query: 61  EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRLQKLAA 120
           EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSR+QK+AA
Sbjct: 521 EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKIAA 580

Query: 121 TQGPAADRELLGQKFWMS 133
           TQGPAADRELLGQKFWMS
Sbjct: 581 TQGPAADRELLGQKFWMS 596

[Close]

BLAST of Sgr018146 vs. ExPASy TrEMBL
Match: A0A5D3DMB1 (Nuclear pore complex protein NUP62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003180 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-42
Identity = 102/138 (73.91%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MTEIHKRIRGRILL-----VERLYEIE-GNKFNISAPLDVDLLDWYEQAEYIERELEQMT 60
           + E H++   + LL      ER+Y+ E G   +  A    D +  YEQAEYIERELEQMT
Sbjct: 211 LIETHQQEVDKALLSVEDDAERIYKDERGLLLDDEAASTRDAM--YEQAEYIERELEQMT 270

Query: 61  EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRLQKLAA 120
           EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSR+QKLAA
Sbjct: 271 EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAA 330

Query: 121 TQGPAADRELLGQKFWMS 133
           T+GPAADRELLGQKFWMS
Sbjct: 331 TEGPAADRELLGQKFWMS 346

[Close]

BLAST of Sgr018146 vs. ExPASy TrEMBL
Match: A0A6J1CMQ9 (nuclear pore complex protein NUP62-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012564 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-42
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 40  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 99
           YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID
Sbjct: 581 YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 640

Query: 100 EKAEEFSSRLQKLAATQGPAADRELLGQKFWMS 133
           EKAEEFSSR+QK+AATQGPAADRELLGQKFWMS
Sbjct: 641 EKAEEFSSRIQKIAATQGPAADRELLGQKFWMS 673

[Close]

BLAST of Sgr018146 vs. ExPASy TrEMBL
Match: A0A6J1CM51 (nuclear pore complex protein NUP62-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012564 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-42
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 40  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 99
           YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID
Sbjct: 632 YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 691

Query: 100 EKAEEFSSRLQKLAATQGPAADRELLGQKFWMS 133
           EKAEEFSSR+QK+AATQGPAADRELLGQKFWMS
Sbjct: 692 EKAEEFSSRIQKIAATQGPAADRELLGQKFWMS 724

[Close]

BLAST of Sgr018146 vs. ExPASy TrEMBL
Match: A0A1S3CAD4 (nuclear pore complex protein NUP62 OS=Cucumis melo OX=3656 GN=LOC103498773 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-42
Identity = 102/138 (73.91%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MTEIHKRIRGRILL-----VERLYEIE-GNKFNISAPLDVDLLDWYEQAEYIERELEQMT 60
           + E H++   + LL      ER+Y+ E G   +  A    D +  YEQAEYIERELEQMT
Sbjct: 626 LIETHQQEVDKALLSVEDDAERIYKDERGLLLDDEAASTRDAM--YEQAEYIERELEQMT 685

Query: 61  EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRLQKLAA 120
           EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSR+QKLAA
Sbjct: 686 EQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAA 745

Query: 121 TQGPAADRELLGQKFWMS 133
           T+GPAADRELLGQKFWMS
Sbjct: 746 TEGPAADRELLGQKFWMS 761

[Close]

BLAST of Sgr018146 vs. TAIR 10
Match: AT2G45000.1 (structural constituent of nuclear pore )

HSP 1 Score: 142.1 bits (357), Expect = 3.1e-34
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 40  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWID 99
           YEQ+E +ERELE MTEQI+SIIQ++NANQGGEL+ IDGM+PLD VVRILNNQLSSLMWID
Sbjct: 648 YEQSELVERELEHMTEQIRSIIQSVNANQGGELEAIDGMSPLDVVVRILNNQLSSLMWID 707

Query: 100 EKAEEFSSRLQKLAATQGPAADRELLGQKFWMS 133
           EKAEEFSSR+QK+ A QG   DREL+  K WMS
Sbjct: 708 EKAEEFSSRIQKI-ALQGSGGDRELMAPKHWMS 739

The following BLAST results are available for this feature:

BLAST of Sgr018146 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156652.1	3.8e-42	73.91	nuclear pore complex protein NUP62, partial [Momordica charantia]	[more]
XP_022142426.1	5.0e-42	97.85	nuclear pore complex protein NUP62-like isoform X1 [Momordica charantia]	[more]
XP_022142427.1	5.0e-42	97.85	nuclear pore complex protein NUP62-like isoform X2 [Momordica charantia]	[more]
XP_008459731.1	5.0e-42	73.91	PREDICTED: nuclear pore complex protein NUP62 [Cucumis melo]	[more]
XP_038874708.1	5.0e-42	76.34	nuclear pore complex protein NUP62 [Benincasa hispida]	[more]

BLAST of Sgr018146 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L7F7	4.4e-33	76.34	Nuclear pore complex protein NUP62 OS=Arabidopsis thaliana OX=3702 GN=NUP62 PE=1...	[more]
Q7JXF5	1.1e-04	29.41	Nuclear pore glycoprotein p62 OS=Drosophila melanogaster OX=7227 GN=Nup62 PE=1 S...	[more]
Q63850	2.5e-04	34.72	Nuclear pore glycoprotein p62 OS=Mus musculus OX=10090 GN=Nup62 PE=1 SV=2	[more]
P17955	2.5e-04	34.72	Nuclear pore glycoprotein p62 OS=Rattus norvegicus OX=10116 GN=Nup62 PE=1 SV=1	[more]
P37198	7.4e-04	32.88	Nuclear pore glycoprotein p62 OS=Homo sapiens OX=9606 GN=NUP62 PE=1 SV=3	[more]

BLAST of Sgr018146 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSI7	1.9e-42	73.91	nuclear pore complex protein NUP62 OS=Momordica charantia OX=3673 GN=LOC11102350...	[more]
A0A5D3DMB1	2.4e-42	73.91	Nuclear pore complex protein NUP62 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1CMQ9	2.4e-42	97.85	nuclear pore complex protein NUP62-like isoform X2 OS=Momordica charantia OX=367...	[more]
A0A6J1CM51	2.4e-42	97.85	nuclear pore complex protein NUP62-like isoform X1 OS=Momordica charantia OX=367...	[more]
A0A1S3CAD4	2.4e-42	73.91	nuclear pore complex protein NUP62 OS=Cucumis melo OX=3656 GN=LOC103498773 PE=3 ...	[more]

BLAST of Sgr018146 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45000.1	3.1e-34	76.34	structural constituent of nuclear pore	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..63
None	No IPR available	PANTHER	PTHR12084:SF0	NUCLEOPORIN 62-LIKE	coord: 40..125
IPR026010	Nucleoporin NSP1/NUP62	PANTHER	PTHR12084	NUCLEAR PORE GLYCOPROTEIN P62-RELATED	coord: 40..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr018146.1	Sgr018146.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0017056	structural constituent of nuclear pore