Sgr017964 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr017964
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Glutamate-gated kainate-type ion channel receptor subunit GluR5
Location	tig00153057: 1069092 .. 1069526 (-)
RNA-Seq Expression	Sgr017964
Synteny	Sgr017964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCTTCTTCTTTCAAGCTTAGATTCGTTCTCGTCTTCACGGTTGTTCTCGCTCTCGCCGCCGTCTCGGAGGCGGCGAGGCTGCCGAGAGAGTACTGGGAGCAGATGCTGCCGAAGAAGCTGCCGTCTCCTTCGTCGGCGCCGTCCAAAGGGACCAACTCCGTGGGTTCTTCTTCTTCTAAGGCTGTGAAAGTTGATGGGAATCTGCCGGCGAAGGAGGGGAAGGTTTAGGTCTCCGGTGGTTGGAGAAGTTGATACGTTCTCTCTCCTAGGTAGAGAGAGGAAATGAAGTCACCGGAAAGAGCTGCAAATCGGGGGGATTCTGAGGAGGAGGATACGGTGGCTTACGGCGAAGCTGCTGCTGGTTCTGTGGCGGCTCGAGCTCTCAGTGATGGGCTTTCATGGCGGATTATATTGATTATATGTAAATGA

mRNA sequence

ATGTTAGCTTCTTCTTTCAAGCTTAGATTCGTTCTCGTCTTCACGGTTGTTCTCGCTCTCGCCGCCGTCTCGGAGGCGGCGAGGCTGCCGAGAGAGTACTGGGAGCAGATGCTGCCGAAGAAGCTGCCGTCTCCTTCGTCGGCGCCGTCCAAAGGGACCAACTCCGTGGGTTCTTCTTCTTCTAAGGCTGTGAAAGTTGATGGGAATCTGCCGGCGAAGGAGGGGAAGAGAGAGGAAATGAAGTCACCGGAAAGAGCTGCAAATCGGGGGGATTCTGAGGAGGAGGATACGGTGGCTTACGGCGAAGCTGCTGCTGGTTCTGTGGCGGCTCGAGCTCTCAGTGATGGGCTTTCATGGCGGATTATATTGATTATATGTAAATGA

Coding sequence (CDS)

ATGTTAGCTTCTTCTTTCAAGCTTAGATTCGTTCTCGTCTTCACGGTTGTTCTCGCTCTCGCCGCCGTCTCGGAGGCGGCGAGGCTGCCGAGAGAGTACTGGGAGCAGATGCTGCCGAAGAAGCTGCCGTCTCCTTCGTCGGCGCCGTCCAAAGGGACCAACTCCGTGGGTTCTTCTTCTTCTAAGGCTGTGAAAGTTGATGGGAATCTGCCGGCGAAGGAGGGGAAGAGAGAGGAAATGAAGTCACCGGAAAGAGCTGCAAATCGGGGGGATTCTGAGGAGGAGGATACGGTGGCTTACGGCGAAGCTGCTGCTGGTTCTGTGGCGGCTCGAGCTCTCAGTGATGGGCTTTCATGGCGGATTATATTGATTATATGTAAATGA

Protein sequence

MLASSFKLRFVLVFTVVLALAAVSEAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSSKAVKVDGNLPAKEGKREEMKSPERAANRGDSEEEDTVAYGEAAAGSVAARALSDGLSWRIILIICK

Homology

[Close]

BLAST of Sgr017964 vs. NCBI nr
Match: KAG6607702.1 (hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 5  SFKLRFVLVFTVVLALAAV-SEAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSSKA 64
          SF+ RF+ +  +VLALA++ SEAAR+P +YWEQMLPKKLP+PSSAPSKGTNSV SSS K 
Sbjct: 25 SFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSSFKT 84

Query: 65 VKVDGNLPAK 74
          VKVDGNLPAK
Sbjct: 85 VKVDGNLPAK 94

[Close]

BLAST of Sgr017964 vs. NCBI nr
Match: KAE8646070.1 (hypothetical protein Csa_015561 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-16
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 5  SFKLRFVLVFTVVLALAAVS-EAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSSKA 64
          SF  RF+L  T+VLAL ++S +AAR+P  YWEQMLPKKLPSPSSAPSKGTN+V  SSSK 
Sbjct: 4  SFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKP 63

Query: 65 VKVDGNLPAKEG 76
          +KV+GNLPAK+G
Sbjct: 64 MKVNGNLPAKDG 75

[Close]

BLAST of Sgr017964 vs. NCBI nr
Match: TYK23265.1 (glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 7.8e-16
Identity = 49/72 (68.06%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 5  SFKLRFVLVFTVVLALAAV-SEAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSSKA 64
          +F  RF+L  T++LAL ++ S+AAR+P  YWEQMLPKKLPSPSSAPSKGTN+V  SSSK 
Sbjct: 4  AFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKP 63

Query: 65 VKVDGNLPAKEG 76
          +KV+GNLPAK+G
Sbjct: 64 MKVNGNLPAKDG 75

[Close]

BLAST of Sgr017964 vs. NCBI nr
Match: KAF4387201.1 (hypothetical protein F8388_008835 [Cannabis sativa])

HSP 1 Score: 87.4 bits (215), Expect = 9.5e-14
Identity = 45/76 (59.21%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 2   LASSFKLRFVLVFTVVLALAAVSEAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSS 61
           +  S++ ++ L F +++A   +SEA+RLP+EY++QM+PKKLPSPSS+PSKGTNSV +SSS
Sbjct: 37  MLGSWRQKYCLFFILLIAFIDLSEASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSS 96

Query: 62  KAVKVDGNLPAKEGKR 78
           KAVK D NLP+ +GKR
Sbjct: 97  KAVKADANLPSFDGKR 112

[Close]

BLAST of Sgr017964 vs. NCBI nr
Match: KAF4402307.1 (hypothetical protein G4B88_003228 [Cannabis sativa])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 2   LASSFKLRFVLVFTVVLALAAVSEAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSS 61
           +  S++ ++ L+F +++A   +SEA+RLP+EY++QM+PKKLPSPSS+PSKGTNSV +SSS
Sbjct: 37  MLGSWRQKYCLIFILLIAFIDLSEASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSS 96

Query: 62  KAVKVDGNLPAKEGK 77
           KAVK D NLP+ +GK
Sbjct: 97  KAVKADANLPSFDGK 111

[Close]

BLAST of Sgr017964 vs. ExPASy TrEMBL
Match: A0A5D3DI56 (Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003180 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 49/72 (68.06%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 5  SFKLRFVLVFTVVLALAAV-SEAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSSKA 64
          +F  RF+L  T++LAL ++ S+AAR+P  YWEQMLPKKLPSPSSAPSKGTN+V  SSSK 
Sbjct: 4  AFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKP 63

Query: 65 VKVDGNLPAKEG 76
          +KV+GNLPAK+G
Sbjct: 64 MKVNGNLPAKDG 75

[Close]

BLAST of Sgr017964 vs. ExPASy TrEMBL
Match: A0A7J6GWN4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008835 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.6e-14
Identity = 45/76 (59.21%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 2   LASSFKLRFVLVFTVVLALAAVSEAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSS 61
           +  S++ ++ L F +++A   +SEA+RLP+EY++QM+PKKLPSPSS+PSKGTNSV +SSS
Sbjct: 37  MLGSWRQKYCLFFILLIAFIDLSEASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSS 96

Query: 62  KAVKVDGNLPAKEGKR 78
           KAVK D NLP+ +GKR
Sbjct: 97  KAVKADANLPSFDGKR 112

[Close]

BLAST of Sgr017964 vs. ExPASy TrEMBL
Match: A0A7J6I408 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_003228 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.0e-14
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 2   LASSFKLRFVLVFTVVLALAAVSEAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSS 61
           +  S++ ++ L+F +++A   +SEA+RLP+EY++QM+PKKLPSPSS+PSKGTNSV +SSS
Sbjct: 37  MLGSWRQKYCLIFILLIAFIDLSEASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSS 96

Query: 62  KAVKVDGNLPAKEGK 77
           KAVK D NLP+ +GK
Sbjct: 97  KAVKADANLPSFDGK 111

[Close]

BLAST of Sgr017964 vs. ExPASy TrEMBL
Match: A0A803PR73 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 44/75 (58.67%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 2   LASSFKLRFVLVFTVVLALAAVSEAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSS 61
           +  S++ ++ L F +++A   +SEA+RLP+EY++QM+PKKLPSPSS+PSKGTNSV +SSS
Sbjct: 37  MLGSWRQKYCLFFILLIAFIDLSEASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSS 96

Query: 62  KAVKVDGNLPAKEGK 77
           KAVK D NLP+ +GK
Sbjct: 97  KAVKADANLPSFDGK 111

[Close]

BLAST of Sgr017964 vs. ExPASy TrEMBL
Match: A0A7N2MJW9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.6e-13
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 12 LVFTVVLALAAVSEAARLPREYWEQMLPKKLPSPSSAPSKGTNSVGSSSSKAVKVDGNLP 71
          L+FT +LA   +SEA+RLP+EYWEQMLPKKLP PSS+PSKGTNS+  SSSKA+K + NLP
Sbjct: 10 LLFT-LLAFIVLSEASRLPKEYWEQMLPKKLPCPSSSPSKGTNSLSKSSSKALKANRNLP 69

Query: 72 AKEGK 77
          + +GK
Sbjct: 70 SSDGK 73

The following BLAST results are available for this feature:

BLAST of Sgr017964 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607702.1	2.0e-16	74.29	hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8646070.1	2.7e-16	70.83	hypothetical protein Csa_015561 [Cucumis sativus]	[more]
TYK23265.1	7.8e-16	68.06	glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo va...	[more]
KAF4387201.1	9.5e-14	59.21	hypothetical protein F8388_008835 [Cannabis sativa]	[more]
KAF4402307.1	1.2e-13	58.67	hypothetical protein G4B88_003228 [Cannabis sativa]	[more]

BLAST of Sgr017964 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr017964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DI56	3.8e-16	68.06	Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo ...	[more]
A0A7J6GWN4	4.6e-14	59.21	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008835 PE=4 SV=1	[more]
A0A7J6I408	6.0e-14	58.67	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_003228 PE=4 SV=1	[more]
A0A803PR73	1.7e-13	58.67	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7N2MJW9	6.6e-13	67.69	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Sgr017964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr017964.1	Sgr017964.1	mRNA