Sgr017236 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr017236
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Glycine rich RNA binding protein
Location	tig00153033: 830312 .. 831612 (-)
RNA-Seq Expression	Sgr017236
Synteny	Sgr017236

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCTTCTCCAGTGTAAGGCGCGTTCTTAATGGATCTTCCTCCATTCTCCGATCTCAGTGGACTACGATTCGTCTCAGCTCAACTCTCACCTCCCCTAAGCTCTTCATAAGTGGTACGTCTCGCAGACAAAAGCAATCAGCTCGTTTTTAATTTTGTTAATTTCACCCAAATTTCTGTTTGGATGATGAGAAATTTTTGAGATTGTTGCTAATCCTTTCTCTCTTGCACTCTACCATAAATTTCGAAGAACTAAATGGGATCTCGTTGATAAAAAATGAACTGTTCTGTTGCGTTTTTTTCCCCTTTATTGCTCGTTTGTCCCTCTTCAAGTGGATACTTTTTTTCCTAGTTGCACATATAAAAATTACTTCACTCTTCTGTGAGTGGCGGGGCTTGTTTAGCGTCTGAAATTTGAAGTCGATACCAATCTTAATTGTACCTATCAAAACGTAGATTTGTGTGCCTGCCTGAGATCTTGGGCAATTCCTGCATCGGAAAGTTCGAAGTAAAGCTTTGCCAGTTCATTTCTTAACTCTTTTTATGCTACACGAAGTGTCCTTCGAGTTTGAAGCCTTGCAATTTGGCTGATAAACCGTCCAAAGAATGTATTTCCCATAAGGATCATGTTATTTTCTTTTTAATAAACAAATTAATGGAAGTTCGAACAAGAATGGGTAGAAATGCAACTTATGGAACCACCCCCCCCCCCCCCAAATTAATAAATAAAGTAAAGAAGAACCAGTTATATTGACATTCAGTGATCTTTATATAATGTCTTTCATAATCTTGTATTCTTTATGAATCCAAGAGTATTAGAAATTGATACCTATGAACTTTTTCTGTTTTGGATTGGATATGCCTGGTGAAAGTCTCATGTTTATAGGATGAACAGGTCTTTCAAGATTAACAACAGATGAGAAGCTCAAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGGTTTGACTCTCTCTCCCTCTCTCTCACATATTTACAATTCTAAAAACAATTGTTGTAGACTGCAACCTGTTGACACTGCCCCGACATTTGTGCAGCGAAAGTCATAACTGATCGGGCGACAAGAAGATCAAAGGGATTCGGTTTTGTAACCTACACTACTATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGAGTGGTTGA

mRNA sequence

ATGGCTTTCTTCTCCAGTGTAAGGCGCGTTCTTAATGGATCTTCCTCCATTCTCCGATCTCAGTGGACTACGATTCGTCTCAGCTCAACTCTCACCTCCCCTAAGCTCTTCATAAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCAAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGCGAAAGTCATAACTGATCGGGCGACAAGAAGATCAAAGGGATTCGGTTTTGTAACCTACACTACTATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGAGTGGTTGA

Coding sequence (CDS)

ATGGCTTTCTTCTCCAGTGTAAGGCGCGTTCTTAATGGATCTTCCTCCATTCTCCGATCTCAGTGGACTACGATTCGTCTCAGCTCAACTCTCACCTCCCCTAAGCTCTTCATAAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCAAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGCGAAAGTCATAACTGATCGGGCGACAAGAAGATCAAAGGGATTCGGTTTTGTAACCTACACTACTATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGAGTGGTTGA

Protein sequence

MAFFSSVRRVLNGSSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFTSFGQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPQPQSETSEFGIRTNKTIGWSG

Homology

[Close]

BLAST of Sgr017236 vs. NCBI nr
Match: XP_023517167.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 133/145 (91.72%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MAFFSSVRRVLNG---SSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFTSF 60
           MAFFS+VRRVLNG   SSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKL+EAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRAT RSKGFGFVTY+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQS-ETSEFGIRTNKTIGWSG 142
           PPPQPQS ETSEFGIRTNKTIGW G
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Sgr017236 vs. NCBI nr
Match: XP_022962832.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata] >KAG6595304.1 Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027314.1 Organelle RRM domain-containing protein 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.4 bits (651), Expect = 2.9e-64
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MAFFSSVRRVLNG---SSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFTSF 60
           MAFFS+VRRVLNG   SSS+LRSQWT  RLSSTLTSPKLFISGLSRLTTDEKL+EAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRAT RSKGFGFVTY+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQS-ETSEFGIRTNKTIGWSG 142
           PPPQPQS ETSEFGIRTNKTIGW G
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Sgr017236 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 251.5 bits (641), Expect = 4.2e-63
Identity = 133/146 (91.10%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MAFFSSVRRVLNG---SSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFTSF 60
           MAFFS+VRRVLNG   SSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKL+EAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR- 120
           GQLVEAKVITDRAT RSKGFGFVTY+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPPQPQS-ETSEFGIRTNKTIGWSG 142
           PPPPQPQS ETSEFGIRTNKTIGW G
Sbjct: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Sgr017236 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 250.4 bits (638), Expect = 9.4e-63
Identity = 131/146 (89.73%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MAFFSSVRRVLNGS-----SSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFT 60
           MAF SSVRRVLNGS     SSIL+SQWTT+RLSSTLTSPKLFISGLSRLTTDEKL+EAF+
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRAT RSKGFGFVTY TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPPQPQSETSEFGIRTNKTIGWSG 142
           R PPPQPQSETSEFGIRTNKTIGW G
Sbjct: 121 R-PPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Sgr017236 vs. NCBI nr
Match: XP_038881167.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60
Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 0


Query: 1   MAFFSSVRRVLNG--SSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFTSFG 60
           MAFFS+VRRVLNG  SSSILRSQWT +RLSSTLTSP+LFISGLSRLTTDEKL+EAF+SFG
Sbjct: 1   MAFFSTVRRVLNGSSSSSILRSQWTAVRLSSTLTSPRLFISGLSRLTTDEKLQEAFSSFG 60

Query: 61  QLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP- 120
           QLVEAKVITDR T RSKGFGFV+Y TIEEAEKARE MNAKFLDGWVIFVDPAKPREPR  
Sbjct: 61  QLVEAKVITDRVTGRSKGFGFVSYNTIEEAEKAREEMNAKFLDGWVIFVDPAKPREPREP 120

Query: 121 -PPPQPQSETSEFGIRTNKTIGWSG 142
            PPPQPQ ETSEFGIRTNKTIGW G
Sbjct: 121 RPPPQPQPETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Sgr017236 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.1e-21
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 33  SPKLFISGLSRLTTDEKLKEAFTSFGQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAR 92
           S  LF+SGLS+ TT E L+ AF  FG++ +AKV+TDR +  SKGFGFV Y T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 93  EGMNAKFLDGWVIFVDPAKPREPRPPPPQPQSETS 128
            GM+ KFLDGWVIF + A+PRE +    QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPRE-QSQSYQPQNNMS 148

[Close]

BLAST of Sgr017236 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 28  SSTLTSPKLFISGLSRLTTDEKLKEAFTSFGQLVEAKVITDRATRRSKGFGFVTYTTIEE 87
           SS+    KL++SGLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T EE
Sbjct: 71  SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEE 130

Query: 88  AEKAREGMNAKFLDGWVIFVDPAKPR------EPRPPPPQPQSETSEF 130
           A KA +GM+ KFLDG VIFV+ AK R      +PR   P+PQS+   F
Sbjct: 131 AMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTF 178

[Close]

BLAST of Sgr017236 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-16
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 4   FSSVRRVLNGSSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFTSFGQLVEA 63
           F S  +   G  S   S+ T     + + + +LF++GLS  T+++ L+ AF  FG+LVE 
Sbjct: 269 FGSDNKNYKGDDSFKSSEAT----QAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEV 328

Query: 64  KVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPQPQ 123
           K+I D+ ++RSKG+ F+ YTT E    A + MN + ++GW+I VD AK R     PP   
Sbjct: 329 KIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQPPYSA 388

Query: 124 SETSEFGIRTNKTIG 139
           S  S   +R+    G
Sbjct: 389 SGRSNQVLRSRYHTG 399

[Close]

BLAST of Sgr017236 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-15
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 28  SSTLTSPKLFISGLSRLTTDEKLKEAFTSFGQLVEAKVITDRATRRSKGFGFVTYTTIEE 87
           S  + + KLFI+GLS  T+++ L+ AF  FG+LVE K+I D+ ++RSKG+ F+ YTT E 
Sbjct: 276 SPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335

Query: 88  AEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPQP 123
           A  A + MN K ++GW+I VD AK +  R    QP
Sbjct: 336 AGTALKEMNGKIINGWMIVVDVAKTKPFRQNRSQP 370

[Close]

BLAST of Sgr017236 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-15
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 35  KLFISGLSRLTTDEKLKEAFTSFGQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREG 94
           KLFI GLS  TT++ L EAF+  GQ+VEA+++ DR + RSKGFGFVT+ + +EA+KA   
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 95  MNAKFLDGWVIFVDPAKPRE 115
            N + L+G  IFVD AK ++
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of Sgr017236 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MAFFSSVRRVLNG---SSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFTSF 60
           MAFFS+VRRVLNG   SSS+LRSQWT  RLSSTLTSPKLFISGLSRLTTDEKL+EAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRAT RSKGFGFVTY+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQS-ETSEFGIRTNKTIGWSG 142
           PPPQPQS ETSEFGIRTNKTIGW G
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Sgr017236 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 133/146 (91.10%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MAFFSSVRRVLNG---SSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFTSF 60
           MAFFS+VRRVLNG   SSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKL+EAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR- 120
           GQLVEAKVITDRAT RSKGFGFVTY+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPPQPQS-ETSEFGIRTNKTIGWSG 142
           PPPPQPQS ETSEFGIRTNKTIGW G
Sbjct: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Sgr017236 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.6e-63
Identity = 131/146 (89.73%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MAFFSSVRRVLNGS-----SSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFT 60
           MAF SSVRRVLNGS     SSIL+SQWTT+RLSSTLTSPKLFISGLSRLTTDEKL+EAF+
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRAT RSKGFGFVTY TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPPQPQSETSEFGIRTNKTIGWSG 142
           R PPPQPQSETSEFGIRTNKTIGW G
Sbjct: 121 R-PPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Sgr017236 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.2e-60
Identity = 124/146 (84.93%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1   MAFFSSVRRVLNG-----SSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFT 60
           MAFFS+VRRVL+G     SSSILRSQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAF+
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60

Query: 61  SFGQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRAT RSKGF FVTY+TIEEAE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPPQPQSETSEFGIRTNKTIGWSG 142
           R PPPQPQSETSEFGIRTNKTIGW G
Sbjct: 121 R-PPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Sgr017236 vs. ExPASy TrEMBL
Match: D7TQ88 (RRM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g03330 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 113/141 (80.14%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MAFFSSVRRVLNGSSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFTSFGQL 60
           MAF SS RRVL GSS+IL+SQ++  R +ST+TSPKLF+SGLSRLTTDEKLKEAF+ FGQL
Sbjct: 1   MAFASSFRRVLTGSSTILQSQFSPARFNSTVTSPKLFVSGLSRLTTDEKLKEAFSPFGQL 60

Query: 61  VEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPP 120
           +EAKVITDR + RSKGFGFVTYTT+EEAEKAREGMNAKFLDGWVIFVDPAKPREPR PPP
Sbjct: 61  LEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWVIFVDPAKPREPR-PPP 120

Query: 121 QPQSETSEFGIRTNKTIGWSG 142
           Q + E+SE G RTNKTIGW G
Sbjct: 121 QQEPESSETGFRTNKTIGWCG 140

[Close]

BLAST of Sgr017236 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-47
Identity = 98/140 (70.00%), Postives = 114/140 (81.43%), Query Frame = 0


Query: 1   MAFFSSVRRVLNGSSSILRSQWTTIRLSSTLTSPKLFISGLSRLTTDEKLKEAFTSFGQL 60
           MAF SS RR++ GSSS+L S    +R  STLTSP+LF+SGLSRLTT+EKL++AF SFGQL
Sbjct: 1   MAFVSSFRRLVAGSSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQL 60

Query: 61  VEAKVITDRATRRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPP 120
           V+A+VITDR + RSKGFGFVTY TIE+AEKA+  MNAKFLDGWVIFVDPA+PREPR P  
Sbjct: 61  VDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRRPLQ 120

Query: 121 Q-PQSETSEFGIRTNKTIGW 140
           Q P   +SE G  TNKTIGW
Sbjct: 121 QEPLRPSSESGFTTNKTIGW 140

[Close]

BLAST of Sgr017236 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 101.7 bits (252), Expect = 5.0e-22
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 33  SPKLFISGLSRLTTDEKLKEAFTSFGQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAR 92
           S  LF+SGLS+ TT E L+ AF  FG++ +AKV+TDR +  SKGFGFV Y T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 93  EGMNAKFLDGWVIFVDPAKPREPRPPPPQPQSETS 128
            GM+ KFLDGWVIF + A+PRE +    QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPRE-QSQSYQPQNNMS 148

[Close]

BLAST of Sgr017236 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-18
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 28  SSTLTSPKLFISGLSRLTTDEKLKEAFTSFGQLVEAKVITDRATRRSKGFGFVTYTTIEE 87
           SS+    KL++SGLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T EE
Sbjct: 71  SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEE 130

Query: 88  AEKAREGMNAKFLDGWVIFVDPAKPR------EPRPPPPQPQSETSEF 130
           A KA +GM+ KFLDG VIFV+ AK R      +PR   P+PQS+   F
Sbjct: 131 AMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTF 178

[Close]

BLAST of Sgr017236 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 84.3 bits (207), Expect = 8.3e-17
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 28  SSTLTSPKLFISGLSRLTTDEKLKEAFTSFGQLVEAKVITDRATRRSKGFGFVTYTTIEE 87
           S  + + KLFI+GLS  T+++ L+ AF  FG+LVE K+I D+ ++RSKG+ F+ YTT E 
Sbjct: 276 SPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335

Query: 88  AEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPQP 123
           A  A + MN K ++GW+I VD AK +  R    QP
Sbjct: 336 AGTALKEMNGKIINGWMIVVDVAKTKPFRQNRSQP 370

[Close]

BLAST of Sgr017236 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 84.3 bits (207), Expect = 8.3e-17
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 35  KLFISGLSRLTTDEKLKEAFTSFGQLVEAKVITDRATRRSKGFGFVTYTTIEEAEKAREG 94
           KLFI GLS  TT++ L EAF+  GQ+VEA+++ DR + RSKGFGFVT+ + +EA+KA   
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 95  MNAKFLDGWVIFVDPAKPRE 115
            N + L+G  IFVD AK ++
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQ 114

The following BLAST results are available for this feature:

BLAST of Sgr017236 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023517167.1	1.7e-64	91.72	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. ...	[more]
XP_022962832.1	2.9e-64	91.72	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata] >K...	[more]
XP_022972736.1	4.2e-63	91.10	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]
XP_022143719.1	9.4e-63	89.73	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_038881167.1	1.5e-60	87.59	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]

BLAST of Sgr017236 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	7.1e-21	53.68	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	4.8e-17	45.37	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q6YWP9	6.9e-16	36.30	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q8L440	1.2e-15	46.32	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	1.2e-15	52.50	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]

BLAST of Sgr017236 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDN1	1.4e-64	91.72	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A6J1I6S8	2.0e-63	91.10	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A6J1CQ59	4.6e-63	89.73	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A1S3BHV3	6.2e-60	84.93	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
D7TQ88	1.3e-54	80.14	RRM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g03330 PE...	[more]

BLAST of Sgr017236 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	1.6e-47	70.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	5.0e-22	53.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	3.4e-18	45.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	8.3e-17	46.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	8.3e-17	52.50	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 1.8E-24 score: 97.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..102 e-value: 5.1E-20 score: 71.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 17.88162
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 26..136 e-value: 9.7E-27 score: 95.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..141
None	No IPR available	PANTHER	PTHR48029	NUCLEOLAR PROTEIN 8	coord: 1..141
None	No IPR available	PANTHER	PTHR48029:SF3	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..141
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 33..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr017236.1	Sgr017236.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding