Sgr017193 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr017193
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	DNA-directed RNA polymerase subunit omega
Location	tig00153033: 391060 .. 391461 (-)
RNA-Seq Expression	Sgr017193
Synteny	Sgr017193

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTTCATCATCTCACCAATATTGCAACGGCTGCTCCCAACCCTCCTGCAGTTCACCGCATACTTCGTAAACGACGCTTTAATAATTTCTTTCTTCTTCAACTCAGACGCTTCCTTCCGCCTCTTATAGCTGAACCAGGCCGCCTGTATGAAGCATGCAGCCCACGTCCGCCATTGATGCGAGTGAAACCTGAAGGTGTATCTCAGTTGCTTGCTGTGCAGCCTCCGGAACTGCGCTGCAACGAACTTCAAGTCCTCCGCTATGAGAGCAAAAGCTTCAACCTCGGTTATGGCTTTCACAGTGCGAGTGGAAGATGGGAGGACGACGCCAGGCCGAGGATCCAGAGCCCATGGAAGCAACTCCTCGCCGCAGAAGTCACTCGGCCCGAGCCGACTTGA

mRNA sequence

ATGAATGTTCATCATCTCACCAATATTGCAACGGCTGCTCCCAACCCTCCTGCAGTTCACCGCATACTTCGTAAACGACGCTTTAATAATTTCTTTCTTCTTCAACTCAGACGCTTCCTTCCGCCTCTTATAGCTGAACCAGGCCGCCTGTATGAAGCATGCAGCCCACGTCCGCCATTGATGCGAGTGAAACCTGAAGGTGTATCTCAGTTGCTTGCTGTGCAGCCTCCGGAACTGCGCTGCAACGAACTTCAAGTCCTCCGCTATGAGAGCAAAAGCTTCAACCTCGGTTATGGCTTTCACAGTGCGAGTGGAAGATGGGAGGACGACGCCAGGCCGAGGATCCAGAGCCCATGGAAGCAACTCCTCGCCGCAGAAGTCACTCGGCCCGAGCCGACTTGA

Coding sequence (CDS)

ATGAATGTTCATCATCTCACCAATATTGCAACGGCTGCTCCCAACCCTCCTGCAGTTCACCGCATACTTCGTAAACGACGCTTTAATAATTTCTTTCTTCTTCAACTCAGACGCTTCCTTCCGCCTCTTATAGCTGAACCAGGCCGCCTGTATGAAGCATGCAGCCCACGTCCGCCATTGATGCGAGTGAAACCTGAAGGTGTATCTCAGTTGCTTGCTGTGCAGCCTCCGGAACTGCGCTGCAACGAACTTCAAGTCCTCCGCTATGAGAGCAAAAGCTTCAACCTCGGTTATGGCTTTCACAGTGCGAGTGGAAGATGGGAGGACGACGCCAGGCCGAGGATCCAGAGCCCATGGAAGCAACTCCTCGCCGCAGAAGTCACTCGGCCCGAGCCGACTTGA

Protein sequence

MNVHHLTNIATAAPNPPAVHRILRKRRFNNFFLLQLRRFLPPLIAEPGRLYEACSPRPPLMRVKPEGVSQLLAVQPPELRCNELQVLRYESKSFNLGYGFHSASGRWEDDARPRIQSPWKQLLAAEVTRPEPT

Homology

[Close]

BLAST of Sgr017193 vs. NCBI nr
Match: POO01680.1 (hypothetical protein TorRG33x02_024570, partial [Trema orientale])

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-14
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 41  PPLIAEPGRLYEACSPRPPLMRVKPEGVSQLLAVQPPELRCNELQVLRYESKSFNLGYGF 100
           PPL+ EP RLYEA  PRPPLM V+P+ V+ LLAV+PPEL  +EL++L  + +  +L    
Sbjct: 2   PPLVPEPRRLYEASRPRPPLMGVEPKRVADLLAVKPPELSRHELEILGDQGEGLDLADRL 61

Query: 101 HSASGRWEDDARPRIQSPWKQLLAAEVTRPEP 133
                R ED A  R+Q P +QLLAAE+ R +P
Sbjct: 62  DGPRRRREDHAGARVQRPRQQLLAAELARTDP 93

[Close]

BLAST of Sgr017193 vs. NCBI nr
Match: GER48727.1 (DNA-directed RNA polymerase subunit omega, partial [Striga asiatica])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-08
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 40  LPPLIAEPGRLYEACSPRPPLMRVKPEGVSQLLAVQPPELRCNELQVLRYESKSFNLGYG 99
           L P +A PG L E   PR PL+RV+ EG+  L AV PPEL  +EL+++RY+SK  +L  G
Sbjct: 64  LAPGVAAPGCLDEGGRPRAPLLRVEAEGLLHLAAVDPPELAGDELELVRYQSKGLHLCQG 123

Query: 100 FHSASGRWEDDARPRIQSPWKQLLAAEV 128
              A G  E      ++ P ++LL  EV
Sbjct: 124 LDCAGGGREIGGGLGVEGPREELLPTEV 151

[Close]

BLAST of Sgr017193 vs. NCBI nr
Match: PON69312.1 (hypothetical protein PanWU01x14_090350 [Parasponia andersonii])

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-06
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 61  MRVKPEGVSQLLAVQPPELRCNELQVLRYESKSFNLGYGFHSASGRWEDDARPRIQSPWK 120
           M V+P+ V+ LLA++PPEL  +EL++L  + +  +L         RWED A  R+Q P +
Sbjct: 1   MGVEPKRVADLLAMKPPELSRHELEILGDQGEGLDLADRLDGPRRRWEDHAGARVQRPRQ 60

Query: 121 QLLAAEVTRPEP 133
           QLLAAE+ R +P
Sbjct: 61  QLLAAELGRTDP 72

[Close]

BLAST of Sgr017193 vs. NCBI nr
Match: KAB8116704.1 (hypothetical protein EE612_057968, partial [Oryza sativa] >BAT16005.1 Os12g0163050, partial [Oryza sativa Japonica Group])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 48/122 (39.34%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 10  ATAAPNPPAVHRILRKRRFNNFFLLQLRRFLPPLIAEPGRLYEACSPRPPLMRVKPEGVS 69
           A A   P AV   L         L +L   L  L+A P  L+EA +P PPL+ V PE V 
Sbjct: 16  AVAVVVPVAVVAALALHVVELLLLAELPGELALLVAAPRALHEARAPAPPLVGVVPERVL 75

Query: 70  QLLAVQPPELRCNELQVLRYESKSFNLGYGFHSASGRWEDDARPRIQSPWKQLLAAEVTR 129
           Q LAVQP EL  + L+VL  E +  +LG   H      E +A    + P ++LLAAEV  
Sbjct: 76  QPLAVQPLELVGDVLEVLGAERERLHLGDRPHRPRRLREVEAGVGHERPGEELLAAEVAG 135

Query: 130 PE 132
            E
Sbjct: 136 AE 137

[Close]

BLAST of Sgr017193 vs. NCBI nr
Match: KAB8097195.1 (hypothetical protein EE612_025880 [Oryza sativa] >BAS91285.1 Os04g0643550 [Oryza sativa Japonica Group])

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-05
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 31  FFLLQLRRFLPPLIAEPGRLYEACSPRPPLMRVKPEGVSQLLAVQPPELRCNELQVLRYE 90
           FFL  L   LP +IA P RL E   P PP++ ++PE V  L  V+PPEL  ++ Q+L  +
Sbjct: 80  FFLAMLLGHLPLVIAAPCRLNETGRPCPPVLGIEPERVLNLPTVEPPELTGHKFQLLSTQ 139

Query: 91  SKSFNLGYGFHSAS 105
            K  NL   FH  S
Sbjct: 140 RKCLNLSKSFHCPS 153

[Close]

BLAST of Sgr017193 vs. ExPASy TrEMBL
Match: A0A2P5FV57 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_024570 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 41  PPLIAEPGRLYEACSPRPPLMRVKPEGVSQLLAVQPPELRCNELQVLRYESKSFNLGYGF 100
           PPL+ EP RLYEA  PRPPLM V+P+ V+ LLAV+PPEL  +EL++L  + +  +L    
Sbjct: 2   PPLVPEPRRLYEASRPRPPLMGVEPKRVADLLAVKPPELSRHELEILGDQGEGLDLADRL 61

Query: 101 HSASGRWEDDARPRIQSPWKQLLAAEVTRPEP 133
                R ED A  R+Q P +QLLAAE+ R +P
Sbjct: 62  DGPRRRREDHAGARVQRPRQQLLAAELARTDP 93

[Close]

BLAST of Sgr017193 vs. ExPASy TrEMBL
Match: A0A5A7QWG3 (DNA-directed RNA polymerase subunit omega (Fragment) OS=Striga asiatica OX=4170 GN=STAS_25904 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 40  LPPLIAEPGRLYEACSPRPPLMRVKPEGVSQLLAVQPPELRCNELQVLRYESKSFNLGYG 99
           L P +A PG L E   PR PL+RV+ EG+  L AV PPEL  +EL+++RY+SK  +L  G
Sbjct: 64  LAPGVAAPGCLDEGGRPRAPLLRVEAEGLLHLAAVDPPELAGDELELVRYQSKGLHLCQG 123

Query: 100 FHSASGRWEDDARPRIQSPWKQLLAAEV 128
              A G  E      ++ P ++LL  EV
Sbjct: 124 LDCAGGGREIGGGLGVEGPREELLPTEV 151

[Close]

BLAST of Sgr017193 vs. ExPASy TrEMBL
Match: A0A2P5D7P0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_090350 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 61  MRVKPEGVSQLLAVQPPELRCNELQVLRYESKSFNLGYGFHSASGRWEDDARPRIQSPWK 120
           M V+P+ V+ LLA++PPEL  +EL++L  + +  +L         RWED A  R+Q P +
Sbjct: 1   MGVEPKRVADLLAMKPPELSRHELEILGDQGEGLDLADRLDGPRRRWEDHAGARVQRPRQ 60

Query: 121 QLLAAEVTRPEP 133
           QLLAAE+ R +P
Sbjct: 61  QLLAAELGRTDP 72

[Close]

BLAST of Sgr017193 vs. ExPASy TrEMBL
Match: A0A0P0Y7C7 (Os12g0163050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0163050 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.3e-06
Identity = 48/122 (39.34%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 10  ATAAPNPPAVHRILRKRRFNNFFLLQLRRFLPPLIAEPGRLYEACSPRPPLMRVKPEGVS 69
           A A   P AV   L         L +L   L  L+A P  L+EA +P PPL+ V PE V 
Sbjct: 16  AVAVVVPVAVVAALALHVVELLLLAELPGELALLVAAPRALHEARAPAPPLVGVVPERVL 75

Query: 70  QLLAVQPPELRCNELQVLRYESKSFNLGYGFHSASGRWEDDARPRIQSPWKQLLAAEVTR 129
           Q LAVQP EL  + L+VL  E +  +LG   H      E +A    + P ++LLAAEV  
Sbjct: 76  QPLAVQPLELVGDVLEVLGAERERLHLGDRPHRPRRLREVEAGVGHERPGEELLAAEVAG 135

Query: 130 PE 132
            E
Sbjct: 136 AE 137

[Close]

BLAST of Sgr017193 vs. ExPASy TrEMBL
Match: A0A0P0WFK4 (Os04g0643550 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0643550 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-05
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 31  FFLLQLRRFLPPLIAEPGRLYEACSPRPPLMRVKPEGVSQLLAVQPPELRCNELQVLRYE 90
           FFL  L   LP +IA P RL E   P PP++ ++PE V  L  V+PPEL  ++ Q+L  +
Sbjct: 80  FFLAMLLGHLPLVIAAPCRLNETGRPCPPVLGIEPERVLNLPTVEPPELTGHKFQLLSTQ 139

Query: 91  SKSFNLGYGFHSAS 105
            K  NL   FH  S
Sbjct: 140 RKCLNLSKSFHCPS 153

The following BLAST results are available for this feature:

BLAST of Sgr017193 vs. NCBI nr


Match Name	E-value	Identity	Description
POO01680.1	2.6e-14	50.00	hypothetical protein TorRG33x02_024570, partial [Trema orientale]	[more]
GER48727.1	3.7e-08	43.18	DNA-directed RNA polymerase subunit omega, partial [Striga asiatica]	[more]
PON69312.1	7.6e-06	43.06	hypothetical protein PanWU01x14_090350 [Parasponia andersonii]	[more]
KAB8116704.1	1.3e-05	39.34	hypothetical protein EE612_057968, partial [Oryza sativa] >BAT16005.1 Os12g01630...	[more]
KAB8097195.1	4.9e-05	43.24	hypothetical protein EE612_025880 [Oryza sativa] >BAS91285.1 Os04g0643550 [Oryza...	[more]

BLAST of Sgr017193 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr017193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5FV57	1.3e-14	50.00	Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_024...	[more]
A0A5A7QWG3	1.8e-08	43.18	DNA-directed RNA polymerase subunit omega (Fragment) OS=Striga asiatica OX=4170 ...	[more]
A0A2P5D7P0	3.7e-06	43.06	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_090350 PE...	[more]
A0A0P0Y7C7	6.3e-06	39.34	Os12g0163050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os12...	[more]
A0A0P0WFK4	2.4e-05	43.24	Os04g0643550 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0643550 PE...	[more]

BLAST of Sgr017193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr017193.1	Sgr017193.1	mRNA