Sgr017192 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr017192
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationtig00153033: 389184 .. 390785 (-)
RNA-Seq ExpressionSgr017192
SyntenySgr017192
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTTGATGTCTCGTCGGAGGTCCATGGGAAGGCCTCTAAGAATGTCTTCTTCATCGACCCCACGAGTTGCGATCCATCTGAATTGCTCGTATTTTCGCACGCTTTGCTTCAGTTGATATGGCAGCTGCCTGTGATGCATCCATTGCTCTGTGTCTGTCCTCCTCACCCTCCATTCTTCTAGTCTCAAAGTTGTGGATTGAAGATACGTCTGCAGGCATTACAAAAAGTTGAACACCAATCACTTTTCAAAAGGGTATCCTACATTAAGCTTTTTGAAGATATGATGAAAATTATGATCATTTGACTAACTACAAGGAAAACAATCAATATTAAAAATTGCTTCTTTGACATGAATAATGATGAGATGGGTATGAAGCTAATTACTTGCATATTTCCAATAAGAAGTGCGAAAAGCACCAAACCCACAATCGCAATCACAATGGCAAAGTTGATTTCTCCCACATTGCCACTTGTAAATAAATTTTGTCCAAGAGAGCTGCAAAACGATGCAACCTTTTTGTGATCAACATGTCTTTTTTTCGTAATATATCTTTCTAGAAAGAGGGTAAATTAATTAAGTACCTTAAATTCCTCAAGCCCCACCAAAAACAATAGAAGTACCTATTGAAGAAGGTGGAAGAAGTTGAGGCAAATGATAATGAATCAGAAAAAATCCCAAAATGGAAGAAGCTGATGGCTGTTGGATGACATAGATTTGAGATATTGGTTGCCTCGAACCAAGCAGCTCTGATTGGGTTTCCCACAGCGTCACAATTAAAAAACTTATATTGGCAATTTGAGTGCCCCAAACTGCACACTTTTTTCCAGCATTCCATTTGGCGTCCTACGGATAAGAGGTACCAACAAGACCCCAAAACCTAAACAAATTAAAACAAATCATGCATTAAACCTAGTTTTAAACACATCACTGACCCTTTTCCCCTCAGCATATAAGAAAGTAATTAGGAGTCTGAAACTCACGTGACTTGCCAACATAAAGAGCATTAGGTTATATACAGCTCCAGCCCATGCTGTTTTCATCAGAACTCCAGTGGCCTTAATGATTTGATCAGAGAGAGGGAAGATCAGATAGAGCCTCAAAAGGTACTGGAAGAAGATGGAGAAGCGAAGAACGTAACTCCAAGGGGTCATGTTTGGACCCCTAATGTTTGGAATTGCAACCCAAACGAATGCCTGCGAAAGATATTCAAATTTTAAACACAATCCAACAAATTATGGAGACGAACTTTACCCCAAGCAAAGATCAGCATCATTATACACAAAAAAAATGCACCTGTGGAAGAGGCAATGCGGCCACAAAGTCCAGCCAAAACTCCATAACAAGATACTTGACTGCAATCTTCCAAGGGTCGATCACCAGCTCTCCTCTCCCGAATATCCGAGACGACGGAGCCACATAAGCCGTCCTAAACCTCACCACAATCTGCGTTATGTAGAAGGCATCCGCCATGGATCGGACCACCGTCAGCGCCACCTCCAGGCGTCTGCATATTTGGACGCAGGCGTGGTCGGGTTTAACCAGCGGCAGGAAGAAGAAAAGAGGGTCGACGAAAAGAGAGACCAAACAAGCCACTAA

mRNA sequence

ATGGCGTTTGATGTCTCGTCGGAGGTCCATGGGAAGGCCTCTAAGAATGTCTTCTTCATCGACCCCACGAGTTGCGATCCATCTGAATTGCTCGTATTTTCGCACGCTTTGCTTCAGTTGATATGGCAGCTGCCTGTGATGCATCCATTGCTCTGTGTCTGTCCTCCTCACCCTCCATTCTTCTATGGCCTTAATGATTTGATCAGAGAGAGGGAAGATCAGATAGAGCCTCAAAAGGTACTGGAAGAAGATGGAGAAGCGAAGAACGTAACTCCAAGGGGTCATAGGCAATGCGGCCACAAAGTCCAGCCAAAACTCCATAACAAGATACTTGACTGCAATCTTCCAAGGGTCGATCACCAGCTCTCCTCTCCCGAATATCCGAGACGACGGAGCCACATAAGCCGTCCTAAACCTCACCACAATCTGCGTTATGTAGAAGGCATCCGCCATGGATCGGACCACCGTCAGCGCCACCTCCAGGCGTCTGCATATTTGGACGCAGGCGTGGTCGGGTTTAACCAGCGGCAGGAAGAAGAAAAGAGGGTCGACGAAAAGAGAGACCAAACAAGCCACTAA

Coding sequence (CDS)

ATGGCGTTTGATGTCTCGTCGGAGGTCCATGGGAAGGCCTCTAAGAATGTCTTCTTCATCGACCCCACGAGTTGCGATCCATCTGAATTGCTCGTATTTTCGCACGCTTTGCTTCAGTTGATATGGCAGCTGCCTGTGATGCATCCATTGCTCTGTGTCTGTCCTCCTCACCCTCCATTCTTCTATGGCCTTAATGATTTGATCAGAGAGAGGGAAGATCAGATAGAGCCTCAAAAGGTACTGGAAGAAGATGGAGAAGCGAAGAACGTAACTCCAAGGGGTCATAGGCAATGCGGCCACAAAGTCCAGCCAAAACTCCATAACAAGATACTTGACTGCAATCTTCCAAGGGTCGATCACCAGCTCTCCTCTCCCGAATATCCGAGACGACGGAGCCACATAAGCCGTCCTAAACCTCACCACAATCTGCGTTATGTAGAAGGCATCCGCCATGGATCGGACCACCGTCAGCGCCACCTCCAGGCGTCTGCATATTTGGACGCAGGCGTGGTCGGGTTTAACCAGCGGCAGGAAGAAGAAAAGAGGGTCGACGAAAAGAGAGACCAAACAAGCCACTAA

Protein sequence

MAFDVSSEVHGKASKNVFFIDPTSCDPSELLVFSHALLQLIWQLPVMHPLLCVCPPHPPFFYGLNDLIREREDQIEPQKVLEEDGEAKNVTPRGHRQCGHKVQPKLHNKILDCNLPRVDHQLSSPEYPRRRSHISRPKPHHNLRYVEGIRHGSDHRQRHLQASAYLDAGVVGFNQRQEEEKRVDEKRDQTSH
Homology
[Close]
BLAST of Sgr017192 vs. NCBI nr
Match: OMO73598.1 (pentatricopeptide repeat-containing protein [Corchorus olitorius])

HSP 1 Score: 68.9 bits (167), Expect = 5.3e-08
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 1  MAFDVSSEVHGKASKNVFFIDPTSCDPSELLVFSHALLQLIWQLPVMHPLLCVCPPHPPF 60
          MAFDV++++H K  +N FFI+  SC+P  L++ S+ L Q I +L V HPL C+ P +PPF
Sbjct: 1  MAFDVAAKIHRKTFENGFFINTPSCNPLVLIITSNTLFQFIRKLSVSHPLFCISPSNPPF 60

Query: 61 F 62
          F
Sbjct: 61 F 61

[Close]
BLAST of Sgr017192 vs. ExPASy TrEMBL
Match: A0A1R3HTG1 (Pentatricopeptide repeat-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_27001 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-08
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 1  MAFDVSSEVHGKASKNVFFIDPTSCDPSELLVFSHALLQLIWQLPVMHPLLCVCPPHPPF 60
          MAFDV++++H K  +N FFI+  SC+P  L++ S+ L Q I +L V HPL C+ P +PPF
Sbjct: 1  MAFDVAAKIHRKTFENGFFINTPSCNPLVLIITSNTLFQFIRKLSVSHPLFCISPSNPPF 60

Query: 61 F 62
          F
Sbjct: 61 F 61

The following BLAST results are available for this feature:
BLAST of Sgr017192 vs. NCBI nr
Match NameE-valueIdentityDescription
OMO73598.15.3e-0849.18pentatricopeptide repeat-containing protein [Corchorus olitorius][more]
BLAST of Sgr017192 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sgr017192 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R3HTG12.6e-0849.18Pentatricopeptide repeat-containing protein OS=Corchorus olitorius OX=93759 GN=C... [more]
BLAST of Sgr017192 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr017192.1Sgr017192.1mRNA