Sgr017059 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr017059
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	tig00153024: 269745 .. 270005 (+)
RNA-Seq Expression	Sgr017059
Synteny	Sgr017059

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATACAGTGAGATAGAAAAGAGACTCTCTAAAGAAGAAAGTCAATTATCCATGTTTGCAATAGTTGATTATCCACTTCAAAATGTCGTAAAGAGTGAAAAACAAAGGAAAGACATGGATGTGGAAATGGAAGCAATAAAACAAGAAGTTACATGGAAATTGACAAAGTTACTTGAAGGCGAAAAGAAAATTGAAGTGAAGTGGATTTCTAAAACCAAATTTAATGAGAATGTTGAAGTTAACAAATACAATGCATGA

mRNA sequence

ATGCTATACAGTGAGATAGAAAAGAGACTCTCTAAAGAAGAAAGTCAATTATCCATGTTTGCAATAGTTGATTATCCACTTCAAAATGTCGTAAAGAGTGAAAAACAAAGGAAAGACATGGATGTGGAAATGGAAGCAATAAAACAAGAAGTTACATGGAAATTGACAAAGTTACTTGAAGGCGAAAAGAAAATTGAAGTGAAGTGGATTTCTAAAACCAAATTTAATGAGAATGTTGAAGTTAACAAATACAATGCATGA

Coding sequence (CDS)

ATGCTATACAGTGAGATAGAAAAGAGACTCTCTAAAGAAGAAAGTCAATTATCCATGTTTGCAATAGTTGATTATCCACTTCAAAATGTCGTAAAGAGTGAAAAACAAAGGAAAGACATGGATGTGGAAATGGAAGCAATAAAACAAGAAGTTACATGGAAATTGACAAAGTTACTTGAAGGCGAAAAGAAAATTGAAGTGAAGTGGATTTCTAAAACCAAATTTAATGAGAATGTTGAAGTTAACAAATACAATGCATGA

Protein sequence

MLYSEIEKRLSKEESQLSMFAIVDYPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKLLEGEKKIEVKWISKTKFNENVEVNKYNA

Homology

[Close]

BLAST of Sgr017059 vs. NCBI nr
Match: XP_027913879.1 (uncharacterized protein LOC114173591 [Vigna unguiculata])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 3   YSEIEKRLSKEESQLSMFAIVDYPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKLLEGE 62
           Y   E    +E   L + +  D P+Q  +KSEK RK MDVEMEAIK+  TW+L +L +G 
Sbjct: 127 YVSREGLFLEENEALLVMSTTDDPIQKAIKSEKWRKTMDVEMEAIKRNNTWELAELPKGA 186

Query: 63  KKIEVKWISKTKFNENVEVNKYNA 87
           KK+ VKW+ KTK NEN EV+KY A
Sbjct: 187 KKVGVKWVYKTKLNENGEVDKYKA 210

[Close]

BLAST of Sgr017059 vs. NCBI nr
Match: RVW35655.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-11
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 5   EIEKRLSKEES--QLSMFAIVD-YPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKLLEG 64
           EI + LSKEE   QL+MFA  D    +  VKSEK R  MDVEMEAIK+  TW+LT L +G
Sbjct: 269 EIGEGLSKEEHEVQLAMFAAADPIYFEEAVKSEKWRTTMDVEMEAIKKNGTWELTDLPKG 328

Query: 65  EKKIEVKWISKTKFNENVEVNKYNA 87
            K I VKW+ KTKFNEN EV K+ A
Sbjct: 329 GKTIGVKWVYKTKFNENREVEKHKA 353

[Close]

BLAST of Sgr017059 vs. NCBI nr
Match: RVW23323.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-11
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 5   EIEKRLSKEESQ-----LSMFAIVD-YPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKL 64
           E  + +S+E+++     L+MFA +D    ++ VKSEK RK MD+EMEAIK   TW+LT+L
Sbjct: 206 ETGEGISEEDNEAHLAHLAMFATIDSIHFEDAVKSEKWRKAMDLEMEAIKNNGTWELTEL 265

Query: 65  LEGEKKIEVKWISKTKFNENVEVNKYNA 87
            +  KK+ VKWI KTKFNEN EV+KY A
Sbjct: 266 PKEAKKVRVKWIYKTKFNENGEVDKYKA 293

[Close]

BLAST of Sgr017059 vs. NCBI nr
Match: RVW80052.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 77.0 bits (188), Expect = 8.7e-11
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 5   EIEKRLSKE--ESQLSMFAIVD-YPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKLLEG 64
           +I + LS+E  E+ L+MFA  D    ++ VKSEK +K MD+E+ AI +  TW+LT+L EG
Sbjct: 640 DIGEGLSEEDNEAHLAMFAAADPIHFEDAVKSEKWKKAMDLELAAINKNGTWELTELPEG 699

Query: 65  EKKIEVKWISKTKFNENVEVNKYNA 87
            KKI VKWI KTKFNEN EV+KY A
Sbjct: 700 GKKIGVKWIYKTKFNENGEVDKYKA 724

[Close]

BLAST of Sgr017059 vs. NCBI nr
Match: RVW22915.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 77.0 bits (188), Expect = 8.7e-11
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 5   EIEKRLSKE--ESQLSMFAIVD-YPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKLLEG 64
           +I + LS+E  E+ L+MFA  D    ++ VKSEK +K MD+E+ AI +  TW+LT+L EG
Sbjct: 53  DIGEGLSEEDNEAHLAMFAAADPIHFEDAVKSEKWKKAMDLELAAINKNGTWELTELPEG 112

Query: 65  EKKIEVKWISKTKFNENVEVNKYNA 87
            KKI VKWI KTKFNEN EV+KY A
Sbjct: 113 GKKIGVKWIYKTKFNENGEVDKYKA 137

[Close]

BLAST of Sgr017059 vs. ExPASy TrEMBL
Match: A0A438DJJ8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1772 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 5   EIEKRLSKEES--QLSMFAIVD-YPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKLLEG 64
           EI + LSKEE   QL+MFA  D    +  VKSEK R  MDVEMEAIK+  TW+LT L +G
Sbjct: 269 EIGEGLSKEEHEVQLAMFAAADPIYFEEAVKSEKWRTTMDVEMEAIKKNGTWELTDLPKG 328

Query: 65  EKKIEVKWISKTKFNENVEVNKYNA 87
            K I VKW+ KTKFNEN EV K+ A
Sbjct: 329 GKTIGVKWVYKTKFNENREVEKHKA 353

[Close]

BLAST of Sgr017059 vs. ExPASy TrEMBL
Match: A0A438CJC8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_371 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 5   EIEKRLSKEESQ-----LSMFAIVD-YPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKL 64
           E  + +S+E+++     L+MFA +D    ++ VKSEK RK MD+EMEAIK   TW+LT+L
Sbjct: 206 ETGEGISEEDNEAHLAHLAMFATIDSIHFEDAVKSEKWRKAMDLEMEAIKNNGTWELTEL 265

Query: 65  LEGEKKIEVKWISKTKFNENVEVNKYNA 87
            +  KK+ VKWI KTKFNEN EV+KY A
Sbjct: 266 PKEAKKVRVKWIYKTKFNENGEVDKYKA 293

[Close]

BLAST of Sgr017059 vs. ExPASy TrEMBL
Match: A0A438CID2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2682 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.2e-11
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 5   EIEKRLSKE--ESQLSMFAIVD-YPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKLLEG 64
           +I + LS+E  E+ L+MFA  D    ++ VKSEK +K MD+E+ AI +  TW+LT+L EG
Sbjct: 53  DIGEGLSEEDNEAHLAMFAAADPIHFEDAVKSEKWKKAMDLELAAINKNGTWELTELPEG 112

Query: 65  EKKIEVKWISKTKFNENVEVNKYNA 87
            KKI VKWI KTKFNEN EV+KY A
Sbjct: 113 GKKIGVKWIYKTKFNENGEVDKYKA 137

[Close]

BLAST of Sgr017059 vs. ExPASy TrEMBL
Match: A5B3I2 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_004365 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.2e-11
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 5   EIEKRLSKE--ESQLSMFAIVD-YPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKLLEG 64
           +I + LS+E  E+ L+MFA  D    ++ VKSEK +K MD+E+ AI +  TW+LT+L EG
Sbjct: 760 DIGEGLSEEDNEAHLAMFAAADPIHFEDAVKSEKWKKAMDLELAAINKNGTWELTELPEG 819

Query: 65  EKKIEVKWISKTKFNENVEVNKYNA 87
            KKI VKWI KTKFNEN EV+KY A
Sbjct: 820 GKKIGVKWIYKTKFNENGEVDKYKA 844

[Close]

BLAST of Sgr017059 vs. ExPASy TrEMBL
Match: A0A438I9M6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_614 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.2e-11
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 5   EIEKRLSKE--ESQLSMFAIVD-YPLQNVVKSEKQRKDMDVEMEAIKQEVTWKLTKLLEG 64
           +I + LS+E  E+ L+MFA  D    ++ VKSEK +K MD+E+ AI +  TW+LT+L EG
Sbjct: 346 DIGEGLSEEDNEAHLAMFAAADPIHFEDAVKSEKWKKAMDLELAAINKNGTWELTELPEG 405

Query: 65  EKKIEVKWISKTKFNENVEVNKYNA 87
            KKI VKWI KTKFNEN EV+KY A
Sbjct: 406 GKKIGVKWIYKTKFNENGEVDKYKA 430

The following BLAST results are available for this feature:

BLAST of Sgr017059 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027913879.1	1.3e-11	51.19	uncharacterized protein LOC114173591 [Vigna unguiculata]	[more]
RVW35655.1	3.0e-11	58.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW23323.1	6.7e-11	52.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW80052.1	8.7e-11	55.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW22915.1	8.7e-11	55.29	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of Sgr017059 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr017059 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438DJJ8	1.4e-11	58.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438CJC8	3.2e-11	52.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438CID2	4.2e-11	55.29	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A5B3I2	4.2e-11	55.29	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438I9M6	4.2e-11	55.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Sgr017059 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr017059.1	Sgr017059.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016740	transferase activity