Sgr016792 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr016792
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionRNase H domain-containing protein
Locationtig00153010: 780011 .. 780381 (+)
RNA-Seq ExpressionSgr016792
SyntenySgr016792
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATGCATACGTGGTATCCACCTCTATTTGGGTGGATGAAGCTCAACACAGATGTACCACGCAAGGTGGGCATTATGGCGACTAGGGTCGGTATTGTGATCAAAGACTCGAAAGGGGAAGTGCTTAGCAATGGCAGCAAAGTGATTCAATTTGGATTATTCTCCGTTGAATGCAGAGTTGTTGGCTATAATTGAGGGTTTGAATCTTGAGAAGATGGGATATCGTTGTGTTGTGGTAGAAATTGATTCTCTGCAAGCTATTAAGCTTATTAATGGATATGAAGAGATCCTTTCTGAGATAGGAAACTGCGTGATGGAAATCCAAGAGCTTTCAAAGACGTTTAAGAGCATTTTATTTACACACTAA

mRNA sequence

ATGGGAGATGCATACGTGGTATCCACCTCTATTTGGGTGGATGAAGCTCAACACAGATGTACCACGCAAGAGTTGTTGGCTATAATTGAGGGTTTGAATCTTGAGAAGATGGGATATCGTTGTGTTGTGGTAGAAATTGATTCTCTGCAAGCTATTAAGCTTATTAATGGATATGAAGAGATCCTTTCTGAGATAGGAAACTGCGTGATGGAAATCCAAGAGCTTTCAAAGACGTTTAAGAGCATTTTATTTACACACTAA

Coding sequence (CDS)

ATGGGAGATGCATACGTGGTATCCACCTCTATTTGGGTGGATGAAGCTCAACACAGATGTACCACGCAAGAGTTGTTGGCTATAATTGAGGGTTTGAATCTTGAGAAGATGGGATATCGTTGTGTTGTGGTAGAAATTGATTCTCTGCAAGCTATTAAGCTTATTAATGGATATGAAGAGATCCTTTCTGAGATAGGAAACTGCGTGATGGAAATCCAAGAGCTTTCAAAGACGTTTAAGAGCATTTTATTTACACACTAA

Protein sequence

MGDAYVVSTSIWVDEAQHRCTTQELLAIIEGLNLEKMGYRCVVVEIDSLQAIKLINGYEEILSEIGNCVMEIQELSKTFKSILFTH
Homology
[Close]
BLAST of Sgr016792 vs. NCBI nr
Match: KAF5192627.1 (hypothetical protein FRX31_017786, partial [Thalictrum thalictroides])

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-04
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 0 

Query: 5   YVVSTSIWVDEAQHRCTTQELLAIIEGLNL-EKMGYRCVVVEIDSLQAIKLINGYEEILS 64
           Y+ +   W+D+     T QELLA++ G+ L +K+G + + V  DSL+ I+ IN +EE   
Sbjct: 100 YISARDAWLDKIPIDATVQELLAVLRGIQLAQKLGVKRIEVASDSLRVIRTINKHEESPW 159

Query: 65  EIGNCVMEIQELSKTFKSILFTH 87
              + +MEI+EL+  F    F H
Sbjct: 160 GCMDQIMEIRELAVRFDQFRFYH 182

[Close]
BLAST of Sgr016792 vs. ExPASy TrEMBL
Match: A0A7J6W6V9 (RNase H domain-containing protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_017786 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 0 

Query: 5   YVVSTSIWVDEAQHRCTTQELLAIIEGLNL-EKMGYRCVVVEIDSLQAIKLINGYEEILS 64
           Y+ +   W+D+     T QELLA++ G+ L +K+G + + V  DSL+ I+ IN +EE   
Sbjct: 100 YISARDAWLDKIPIDATVQELLAVLRGIQLAQKLGVKRIEVASDSLRVIRTINKHEESPW 159

Query: 65  EIGNCVMEIQELSKTFKSILFTH 87
              + +MEI+EL+  F    F H
Sbjct: 160 GCMDQIMEIRELAVRFDQFRFYH 182

The following BLAST results are available for this feature:
BLAST of Sgr016792 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5192627.14.6e-0436.14hypothetical protein FRX31_017786, partial [Thalictrum thalictroides][more]
BLAST of Sgr016792 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sgr016792 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6W6V92.2e-0436.14RNase H domain-containing protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_... [more]
BLAST of Sgr016792 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 21..86
e-value: 2.0E-10
score: 40.5
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 4..86
e-value: 2.6E-5
score: 26.1
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 17..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr016792.1Sgr016792.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity