Sgr016706 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr016706
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionIsopentenyl-diphosphate Delta-isomerase
Locationtig00152985: 1378326 .. 1378706 (+)
RNA-Seq ExpressionSgr016706
SyntenySgr016706
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTTGCCCTCCACCACTTATTAAATACTGCTTGTCCTCGCTCCCTCTCCCTCCCATCAATTTCTGCTTCCCGGCTTCTGCTCTCGACTCCTCGCTTCCCCAAACTCCCCCTCAGATTCTCTCTCTCCTTCCAATCCCCGCGCCTCGCCATGGGAGACACTCCTGATGCTGCCATGGACGCCGTCCAGAAGCGCCTCATGTTCGAGGACGAGTGGGTTTTCTTTTCTTTTCTCTCCTTTTCTCTGATTTGCGTGTTTTCTGTTTATTTTGGTGCGGGGGAAGGACTGAAATCTAAGCCTCTTTTTGTTTTTTCCCGGAAAGGAAATGGAAAGTTGTTGATGGGGTGTTTTAAACCAGTTGAATTGGGTCTCGATTGA

mRNA sequence

ATGTCTCTTGCCCTCCACCACTTATTAAATACTGCTTGTCCTCGCTCCCTCTCCCTCCCATCAATTTCTGCTTCCCGGCTTCTGCTCTCGACTCCTCGCTTCCCCAAACTCCCCCTCAGATTCTCTCTCTCCTTCCAATCCCCGCGCCTCGCCATGGGAGACACTCCTGATGCTGCCATGGACGCCGTCCAGAAGCGCCTCATGTTCGAGGACGAGTGGGTTTTCTTTTCTTTTCTCTCCTTTTCTCTGATTTGCGTGTTTTCTGTTTATTTTGGTGCGGGGGAAGGACTGAAATCTAAGCCTCTTTTTGTTTTTTCCCGGAAAGGAAATGGAAAGTTGTTGATGGGGTGTTTTAAACCAGTTGAATTGGGTCTCGATTGA

Coding sequence (CDS)

ATGTCTCTTGCCCTCCACCACTTATTAAATACTGCTTGTCCTCGCTCCCTCTCCCTCCCATCAATTTCTGCTTCCCGGCTTCTGCTCTCGACTCCTCGCTTCCCCAAACTCCCCCTCAGATTCTCTCTCTCCTTCCAATCCCCGCGCCTCGCCATGGGAGACACTCCTGATGCTGCCATGGACGCCGTCCAGAAGCGCCTCATGTTCGAGGACGAGTGGGTTTTCTTTTCTTTTCTCTCCTTTTCTCTGATTTGCGTGTTTTCTGTTTATTTTGGTGCGGGGGAAGGACTGAAATCTAAGCCTCTTTTTGTTTTTTCCCGGAAAGGAAATGGAAAGTTGTTGATGGGGTGTTTTAAACCAGTTGAATTGGGTCTCGATTGA

Protein sequence

MSLALHHLLNTACPRSLSLPSISASRLLLSTPRFPKLPLRFSLSFQSPRLAMGDTPDAAMDAVQKRLMFEDEWVFFSFLSFSLICVFSVYFGAGEGLKSKPLFVFSRKGNGKLLMGCFKPVELGLD
Homology
[Close]
BLAST of Sgr016706 vs. NCBI nr
Match: AEM42977.1 (isopentenyl diphosphate isomerase [Siraitia grosvenorii])

HSP 1 Score: 104.0 bits (258), Expect = 9.7e-19
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 19 LPSISASRLLLSTPRFPKLPLRFSLSFQSPRLAMGDTPDAAMDAVQKRLMFEDEWV 75
          +PSISASRLLLSTPRFPKLPLRFSLS QSPRLAMGDTPDAAMDAVQKRLMFEDE +
Sbjct: 13 IPSISASRLLLSTPRFPKLPLRFSLSLQSPRLAMGDTPDAAMDAVQKRLMFEDECI 68

[Close]
BLAST of Sgr016706 vs. NCBI nr
Match: RXH82577.1 (hypothetical protein DVH24_036918 [Malus domestica])

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-04
Identity = 40/79 (50.63%), Postives = 46/79 (58.23%), Query Frame = 0 

Query: 1  MSLALHHLLNTACPRSLSLPSISAS----RLLLSTP-RFPKLPLRFSLSFQSPRLAMGDT 60
          MSL+   LL+T      S P + +S      LLS P  FP L  R SLSF S    MGD 
Sbjct: 1  MSLSTARLLHTLSFLPKSHPPLCSSPATPTFLLSKPSAFPSLSARLSLSFHSS--TMGDA 60

Query: 61 PDAAMDAVQKRLMFEDEWV 75
          PDA MDAVQ+RLMFEDE +
Sbjct: 61 PDAGMDAVQRRLMFEDECI 77

[Close]
BLAST of Sgr016706 vs. NCBI nr
Match: TQD80461.1 (hypothetical protein C1H46_033974 [Malus baccata])

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-04
Identity = 40/79 (50.63%), Postives = 46/79 (58.23%), Query Frame = 0 

Query: 1  MSLALHHLLNTACPRSLSLPSISAS----RLLLSTP-RFPKLPLRFSLSFQSPRLAMGDT 60
          MSL+   LL+T      S P + +S      LLS P  FP L  R SLSF S    MGD 
Sbjct: 1  MSLSTARLLHTISFLPKSHPPLFSSPATPTFLLSKPSAFPSLSARLSLSFHSS--TMGDA 60

Query: 61 PDAAMDAVQKRLMFEDEWV 75
          PDA MDAVQ+RLMFEDE +
Sbjct: 61 PDAGMDAVQRRLMFEDECI 77

[Close]
BLAST of Sgr016706 vs. ExPASy Swiss-Prot
Match: Q39472 (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri OX=36903 GN=IPI1 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 8  LLNTACPRSLSLPSISA--SRLLLSTPRFPKLPL--RFS--LSFQSPRLAMGDTPDAAMD 67
          +LN    R +SLP +S+  SR+ L    F  + L  RFS  L+F S    MG+  DA MD
Sbjct: 5  MLNFTASRIVSLPLLSSPPSRVHLPLCFFSPISLTQRFSAKLTFSSQATTMGEVVDAGMD 64

Query: 68 AVQKRLMFEDEWV 75
          AVQ+RLMFEDE +
Sbjct: 65 AVQRRLMFEDECI 77

[Close]
BLAST of Sgr016706 vs. ExPASy TrEMBL
Match: K7NBZ8 (Isopentenyl-diphosphate Delta-isomerase OS=Siraitia grosvenorii OX=190515 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.7e-19
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 19 LPSISASRLLLSTPRFPKLPLRFSLSFQSPRLAMGDTPDAAMDAVQKRLMFEDEWV 75
          +PSISASRLLLSTPRFPKLPLRFSLS QSPRLAMGDTPDAAMDAVQKRLMFEDE +
Sbjct: 13 IPSISASRLLLSTPRFPKLPLRFSLSLQSPRLAMGDTPDAAMDAVQKRLMFEDECI 68

[Close]
BLAST of Sgr016706 vs. ExPASy TrEMBL
Match: A0A498IKK5 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Malus domestica OX=3750 GN=DVH24_036918 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 40/79 (50.63%), Postives = 46/79 (58.23%), Query Frame = 0 

Query: 1  MSLALHHLLNTACPRSLSLPSISAS----RLLLSTP-RFPKLPLRFSLSFQSPRLAMGDT 60
          MSL+   LL+T      S P + +S      LLS P  FP L  R SLSF S    MGD 
Sbjct: 1  MSLSTARLLHTLSFLPKSHPPLCSSPATPTFLLSKPSAFPSLSARLSLSFHSS--TMGDA 60

Query: 61 PDAAMDAVQKRLMFEDEWV 75
          PDA MDAVQ+RLMFEDE +
Sbjct: 61 PDAGMDAVQRRLMFEDECI 77

[Close]
BLAST of Sgr016706 vs. ExPASy TrEMBL
Match: A0A540L1V2 (Isopentenyl-diphosphate Delta-isomerase OS=Malus baccata OX=106549 GN=C1H46_033974 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 40/79 (50.63%), Postives = 46/79 (58.23%), Query Frame = 0 

Query: 1  MSLALHHLLNTACPRSLSLPSISAS----RLLLSTP-RFPKLPLRFSLSFQSPRLAMGDT 60
          MSL+   LL+T      S P + +S      LLS P  FP L  R SLSF S    MGD 
Sbjct: 1  MSLSTARLLHTISFLPKSHPPLFSSPATPTFLLSKPSAFPSLSARLSLSFHSS--TMGDA 60

Query: 61 PDAAMDAVQKRLMFEDEWV 75
          PDA MDAVQ+RLMFEDE +
Sbjct: 61 PDAGMDAVQRRLMFEDECI 77

[Close]
BLAST of Sgr016706 vs. ExPASy TrEMBL
Match: A0A5N5H5B8 (Isopentenyl-diphosphate Delta-isomerase OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_023464 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.6e-04
Identity = 37/77 (48.05%), Postives = 42/77 (54.55%), Query Frame = 0 

Query: 8  LLNTACPRSLS---------LPSISASRLLLS-TPRFPKLPLRFSLSFQSPRLAMGDTPD 67
          L  T  P++LS          PS +    L S  P FP L  R SLSF S    MGD PD
Sbjct: 3  LSTTRLPQTLSFLPKSHPPLFPSPATPTYLFSKPPAFPSLSARLSLSFHSS--TMGDAPD 62

Query: 68 AAMDAVQKRLMFEDEWV 75
          A MDAVQ+RLMFEDE +
Sbjct: 63 AGMDAVQRRLMFEDECI 77

[Close]
BLAST of Sgr016706 vs. ExPASy TrEMBL
Match: A0A2P5C2H3 (Isopentenyl-diphosphate Delta-isomerase OS=Trema orientale OX=63057 GN=TorRG33x02_300320 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.3e-04
Identity = 36/79 (45.57%), Postives = 44/79 (55.70%), Query Frame = 0 

Query: 7  HLLNTACPRSLSLPS-----------ISASRLLLSTPRFPKLPLRFSLSFQSPRLAMGDT 66
          HLLNT+   SL   S            S  R+ + +  F  L  R SLS Q+ + AMGD 
Sbjct: 6  HLLNTSTKLSLVPKSHLFSFSSHFAPHSFRRIPVISRAFSPLTTRVSLSSQASKSAMGDA 65

Query: 67 PDAAMDAVQKRLMFEDEWV 75
          PDA MDAVQ+RLMFEDE +
Sbjct: 66 PDAGMDAVQRRLMFEDECI 84

The following BLAST results are available for this feature:
BLAST of Sgr016706 vs. NCBI nr
Match NameE-valueIdentityDescription
AEM42977.19.7e-1992.86isopentenyl diphosphate isomerase [Siraitia grosvenorii][more]
RXH82577.13.0e-0450.63hypothetical protein DVH24_036918 [Malus domestica][more]
TQD80461.14.0e-0450.63hypothetical protein C1H46_033974 [Malus baccata][more]
BLAST of Sgr016706 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q394721.4e-0446.58Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri OX=36903 GN=IPI1 PE... [more]
BLAST of Sgr016706 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
K7NBZ84.7e-1992.86Isopentenyl-diphosphate Delta-isomerase OS=Siraitia grosvenorii OX=190515 PE=2 S... [more]
A0A498IKK51.5e-0450.634-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Malus domestica OX=3750 GN=DVH24_0... [more]
A0A540L1V21.9e-0450.63Isopentenyl-diphosphate Delta-isomerase OS=Malus baccata OX=106549 GN=C1H46_0339... [more]
A0A5N5H5B85.6e-0448.05Isopentenyl-diphosphate Delta-isomerase OS=Pyrus ussuriensis x Pyrus communis OX... [more]
A0A2P5C2H37.3e-0445.57Isopentenyl-diphosphate Delta-isomerase OS=Trema orientale OX=63057 GN=TorRG33x0... [more]
BLAST of Sgr016706 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr016706.1Sgr016706.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0050992 dimethylallyl diphosphate biosynthetic process
biological_process GO:0008299 isoprenoid biosynthetic process
molecular_function GO:0004452 isopentenyl-diphosphate delta-isomerase activity