Sgr015892 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr015892
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	U2 small nuclear ribonucleoprotein B
Location	tig00006297: 389054 .. 391544 (+)
RNA-Seq Expression	Sgr015892
Synteny	Sgr015892

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCGGGGGATATACCGCCTAATCAGTCCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCACTCTCAGCTTTTCTTTTAATCTTACTCTATTCCTTCTGTAAATGTGTTTTCTTCCGTTCAATTAGTAGACAACTTAGGATAATTGCAGTGATCTTCGCGGCTCTTTTGATTTGGGTGAACTTTGGCTTGCATTTCTTACTATATTTAATATTTCTGATGAGGCCACATGGTAATTACTCAAGAACGAAGAACTATCGTTGTTGGAATTTGGTTTTCAGTGTGGAGGATCTGATAGCTTGAAATTTTAGTTTGGATATGGACAGAGCTACTTGCTTTACCCAGCCCTTGGCGTTTTGGGATTCTGTTTACTATCTTGGTTGCTTAGTGTTTAGTTTTGAAATTCTGATGGTATGCTAATCTTCCCCTTCTTTGACAGAATTGAAGAGATCCCTTTATGCCTTGTTTTCTCAATATGGACGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGCCAAGCGTGGGTTGCGTTTAGTGAAGTGACTGCTGCTAGCAATGCCGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTTTGGTTGGTCTCTAGCTGGTCACATTTGGTGCACTTGCTTTTCATAGTCTTTTTGTGGCCTTTCATATATGGACTGTCTATTGCAATTTGAGGTTCTTTGGGCAACTTTGGATAGTTGGTTTGTCAACATGAAATGAATACTGAATCCTGATCATGCTTCAATGAACATGATGTGGGAGCGACGTGAATATTATTTATACACAATCACACACGATATTATGCTAGTTTAGCTGTTTCGCATGCCTAAAATAATGTCTTTATCTTATTGGATATTTGTGTTTTTGGTATATGTGCTACATACCTGTTTTGCACATTTTGATCTTTACTCTTTGTAACTCCTGTATAATGACGTTTCTTCTGTCAATGTATGTCATCTGCTGTGCAATACATACTTTAGTATTGCTTTTAATGTTGTTGACTCTGGATCTTTGATATCTATTATAACCAGCACGATGAGATTTTGTTTTTCCTTTTGCTAACATGACCAGAAATGTACCCATTATTCTGTTAGGGAGAAACGAGTATTACTGTTTTTTTTTCTTTGTAAATCTCAGTTATTTTATGTTTTGTCTTTGAATTTTGTGTACTGTCCTTTTGTTCATTCATACAACTTATTCTGATATTGAATATAAAGATGACTTTCTGTATTGTTTCTTTTTAGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAGGAGGAAAAAGGTGAATATAACTATATAAATATTAGTGCTCTTCCTAATCATTTTAATATTCATACTCTTTCCTCTTTACGATTAACTCCTTTGGTGGACATTAATTTGAAGTTATAGTTAGCAGATGACGATTATAATTTGACCATAAGAAACATATTACTTTTTTTTTTTAATTGATACACTGGATATGGGATTGTTATCTCGGAATCTCAAATTCAAATTTAAAATGAGAAAATGATGTAAAGTTGGGAAAATAAGAGGTGCAAATTGAAAAAAAATTAGATAGGAAAAAATACCTTTGTTTCTGAAGCCAAGTCAAGTGCACTGATGTATTATTATATGCGATCAGTGTTTATTACTGTTCAAACTTATAAACAGTAACCTCTCATTTTTCTAATTGTATTGCTTTTAAGAGATCATAAGGTTTTTAAACTGGTTTATGTTTCTTATTATTTTTTAATTTGATTATCCAGCTGAAAGAAAGAGACGTGCTGAAGAAGCACACCAATCTACAATGCCCAATGGAACAACTGCCAATGGAGGTTCAAATGTAAGTTCCTTTTCCCTCTTATTTTATTTATATATTGTGATGTAAAATGTTTATTATCCTTCTTCATATGAGTTGTATCATTTAATTCCTACTCTAGAAGTGGTCCCGAGTATTAATTTTATGAGCCTTTTTGGATGACGTGGTCCTCTGGTTAATTGTTTTTGTCTTATTTGTTTAAAGACACTGATGTTTACTCGAATTAGATTTCACTTTAGTGCCCCCTAGATCAGGCAATGTTATTCAACTTTTTTTCATAATTATTTGTGCTAAGAAAGCCTCTTCGTTGTGTGCAGGCCACATTCCGTCATGCAAATCCAAGCGCACCAGAAGCTACTCCAAACAACATACTTTTTATTGAGAATTTGCCGCATGAAACTTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCAGAATGATTGAAGCAAAGCCTGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCCAAGAAGTAA

mRNA sequence

ATGTTATCGGGGGATATACCGCCTAATCAGTCCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTTTATGCCTTGTTTTCTCAATATGGACGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGCCAAGCGTGGGTTGCGTTTAGTGAAGTGACTGCTGCTAGCAATGCCGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTTTGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAGGAGGAAAAAGCTGAAAGAAAGAGACGTGCTGAAGAAGCACACCAATCTACAATGCCCAATGGAACAACTGCCAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGCGCACCAGAAGCTACTCCAAACAACATACTTTTTATTGAGAATTTGCCGCATGAAACTTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCAGAATGATTGAAGCAAAGCCTGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCCAAGAAGTAA

Coding sequence (CDS)

ATGTTATCGGGGGATATACCGCCTAATCAGTCCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTTTATGCCTTGTTTTCTCAATATGGACGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGCCAAGCGTGGGTTGCGTTTAGTGAAGTGACTGCTGCTAGCAATGCCGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTTTGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAGGAGGAAAAAGCTGAAAGAAAGAGACGTGCTGAAGAAGCACACCAATCTACAATGCCCAATGGAACAACTGCCAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGCGCACCAGAAGCTACTCCAAACAACATACTTTTTATTGAGAATTTGCCGCATGAAACTTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCAGAATGATTGAAGCAAAGCCTGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCCAAGAAGTAA

Protein sequence

MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSTMPNGTTANGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Homology

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BLAST of Sgr015892 vs. NCBI nr
Match: XP_038893561.1 (U2 small nuclear ribonucleoprotein B'' 2 [Benincasa hispida])

HSP 1 Score: 435.3 bits (1118), Expect = 3.4e-118
Identity = 222/230 (96.52%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KP+RIQYAKTKSDCVAKADGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSTMPNGTTANGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYP 180
           EEAHQS MPNGTT NGGSNATFRHANP+A EATPNNILFIENLPHETSSMMLQVLFQQYP
Sbjct: 121 EEAHQSAMPNGTTGNGGSNATFRHANPNAAEATPNNILFIENLPHETSSMMLQVLFQQYP 180

Query: 181 GFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           GFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 GFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 230

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BLAST of Sgr015892 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima] >KAG6607350.1 U2 small nuclear ribonucleoprotein B'', partial [Cucurbita argyrosperma subsp. sororia] >KAG7037025.1 U2 small nuclear ribonucleoprotein B'' [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 431.8 bits (1109), Expect = 3.7e-117
Identity = 223/231 (96.54%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKP+RIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQSTMPNGTTA-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQS MPNG TA NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Sgr015892 vs. NCBI nr
Match: XP_008457301.1 (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059982.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa] >TYJ97241.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 430.6 bits (1106), Expect = 8.3e-117
Identity = 222/231 (96.10%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KP+RIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSTMPNGTTA-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EEAHQS MPNGTT  NGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Sgr015892 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430.6 bits (1106), Expect = 8.3e-117
Identity = 222/231 (96.10%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKP+RIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQSTMPNGTTA-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           +E HQS MPNG TA NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Sgr015892 vs. NCBI nr
Match: XP_004137370.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypothetical protein Csa_013411 [Cucumis sativus])

HSP 1 Score: 429.9 bits (1104), Expect = 1.4e-116
Identity = 221/231 (95.67%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KP+RIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSTMPNGTTA-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQS MPNGTT  NGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Sgr015892 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 6.6e-93
Identity = 179/232 (77.16%), Postives = 202/232 (87.07%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQSIYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKP+RIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EEAHQSTMPNG-TTANGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EE  Q +MPNG TT NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Sgr015892 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.6e-89
Identity = 170/234 (72.65%), Postives = 200/234 (85.47%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQSIYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAA +AVRQMQNFPFYDKP+R+QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKR-- 120

Query: 121 EEAHQSTMPNGTTANGGS---NATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLF 180
           E++ +    NG +ANG S           PS  E   PNNILFI+NLPHET+SMMLQ+LF
Sbjct: 121 EDSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           +QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

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BLAST of Sgr015892 vs. ExPASy Swiss-Prot
Match: B8AM21 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 4.6e-86
Identity = 170/232 (73.28%), Postives = 193/232 (83.19%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ++Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRR 120
           E+TAA+NA R +Q F FY K +R+QYAKTKSDC+A  DGS  P+EK+KKQEEK AE+KRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 AEEAHQSTMPNGTTANG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQ 180
           AEEA QS       +NG G  A+        P A PNNILFI+NLP ET+SMMLQ+LFQQ
Sbjct: 121 AEEAQQSGPNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           YPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Sgr015892 vs. ExPASy Swiss-Prot
Match: Q10MR0 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.0e-85
Identity = 169/232 (72.84%), Postives = 193/232 (83.19%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ++Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRR 120
           E+TAA+NA R +Q F FY K +R+QYAKT+SDC+A  DGS  P+EK+KKQEEK AE+KRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 AEEAHQSTMPNGTTANG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQ 180
           AEEA QS       +NG G  A+        P A PNNILFI+NLP ET+SMMLQ+LFQQ
Sbjct: 121 AEEAQQSGPNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           YPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 YPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Sgr015892 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-65
Identity = 138/240 (57.50%), Postives = 177/240 (73.75%), Query Frame = 0


Query: 5   DIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQ+IYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH 124
           AS A+ +M NFPFYDK +RIQYAKTKSD VAKADG+FVPREK+K+ EEK   K++ ++ H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 QST---MPNGTTANGGSNAT-----------FRHANPSAPEATPNNILFIENLPHETSSM 184
            ST   MP  +   G   A             +   P AP A PNNILF++NLPHET+ M
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAP-APPNNILFVQNLPHETTPM 192

Query: 185 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           +LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 VLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

[Close]

BLAST of Sgr015892 vs. ExPASy TrEMBL
Match: A0A6J1KA04 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493013 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.8e-117
Identity = 223/231 (96.54%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKP+RIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQSTMPNGTTA-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQS MPNG TA NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Sgr015892 vs. ExPASy TrEMBL
Match: A0A6J1GC84 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452834 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.8e-117
Identity = 223/231 (96.54%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKP+RIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQSTMPNGTTA-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQS MPNG TA NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Sgr015892 vs. ExPASy TrEMBL
Match: A0A5D3BF51 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00310 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.0e-117
Identity = 222/231 (96.10%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KP+RIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSTMPNGTTA-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EEAHQS MPNGTT  NGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Sgr015892 vs. ExPASy TrEMBL
Match: A0A1S3C564 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.0e-117
Identity = 222/231 (96.10%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KP+RIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSTMPNGTTA-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EEAHQS MPNGTT  NGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Sgr015892 vs. ExPASy TrEMBL
Match: A0A0A0LPT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 6.8e-117
Identity = 221/231 (95.67%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFY+KP+RIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQSTMPNGTTA-NGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQS MPNGTT  NGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Sgr015892 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 344.0 bits (881), Expect = 9.5e-95
Identity = 177/231 (76.62%), Postives = 200/231 (86.58%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQSIYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKP+RIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EEAHQSTMPNGTTANGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQY 180
           EE  Q +MPNG T   G    F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+QY
Sbjct: 121 EETQQPSMPNGATTQNGMPPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           PGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of Sgr015892 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 341.7 bits (875), Expect = 4.7e-94
Identity = 179/232 (77.16%), Postives = 202/232 (87.07%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQSIYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAASNAVRQMQNFPFYDKP+RIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EEAHQSTMPNG-TTANGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EE  Q +MPNG TT NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Sgr015892 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 329.7 bits (844), Expect = 1.9e-90
Identity = 170/234 (72.65%), Postives = 200/234 (85.47%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQSIYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120
           EVTAA +AVRQMQNFPFYDKP+R+QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKR-- 120

Query: 121 EEAHQSTMPNGTTANGGS---NATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLF 180
           E++ +    NG +ANG S           PS  E   PNNILFI+NLPHET+SMMLQ+LF
Sbjct: 121 EDSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           +QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Sgr015892 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 281.2 bits (718), Expect = 7.6e-76
Identity = 149/197 (75.63%), Postives = 169/197 (85.79%), Query Frame = 0


Query: 36  QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPLRIQYAKTKSDCVA 95
           ++GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKP+RIQYAK+KSD V 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 96  KADGSFVPREKKKKQEEKAERKRRAEEAHQSTMPNG-TTANGGSNATFRHANPSAPEA-T 155
           KA+GSFVP+EKK KQEEK ERKR AEE  Q +MPNG TT NG     F+   PS  +   
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMP 126

Query: 156 PNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 215
           PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQ
Sbjct: 127 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 186

Query: 216 GFKIDPQHPMAISFAKK 231
           GFKI PQ+PM +SFAKK
Sbjct: 187 GFKITPQNPMVVSFAKK 200

[Close]

BLAST of Sgr015892 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 251.1 bits (640), Expect = 8.4e-67
Identity = 138/240 (57.50%), Postives = 177/240 (73.75%), Query Frame = 0


Query: 5   DIPPNQSIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQ+IYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYDKPLRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAH 124
           AS A+ +M NFPFYDK +RIQYAKTKSD VAKADG+FVPREK+K+ EEK   K++ ++ H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 QST---MPNGTTANGGSNAT-----------FRHANPSAPEATPNNILFIENLPHETSSM 184
            ST   MP  +   G   A             +   P AP A PNNILF++NLPHET+ M
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAP-APPNNILFVQNLPHETTPM 192

Query: 185 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
           +LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 VLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

The following BLAST results are available for this feature:

BLAST of Sgr015892 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893561.1	3.4e-118	96.52	U2 small nuclear ribonucleoprotein B'' 2 [Benincasa hispida]	[more]
XP_022949507.1	3.7e-117	96.54	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346...	[more]
XP_008457301.1	8.3e-117	96.10	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059...	[more]
XP_023525708.1	8.3e-117	96.10	U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_004137370.1	1.4e-116	95.67	U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypotheti...	[more]

BLAST of Sgr015892 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1S6	6.6e-93	77.16	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
O22922	2.6e-89	72.65	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
B8AM21	4.6e-86	73.28	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q10MR0	1.0e-85	72.84	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q39244	1.2e-65	57.50	U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1...	[more]

BLAST of Sgr015892 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KA04	1.8e-117	96.54	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GC84	1.8e-117	96.54	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3BF51	4.0e-117	96.10	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C564	4.0e-117	96.10	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LPT7	6.8e-117	95.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1	[more]

BLAST of Sgr015892 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06960.2	9.5e-95	76.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.1	4.7e-94	77.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	1.9e-90	72.65	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.3	7.6e-76	75.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	8.4e-67	57.50	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..150
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 4..230
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 4..230
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 154..226 e-value: 2.26856E-38 score: 126.144
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 12..88 e-value: 1.09312E-49 score: 154.994
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 157..226 e-value: 3.6E-10 score: 49.8 coord: 11..85 e-value: 2.0E-12 score: 57.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 158..218 e-value: 2.8E-12 score: 46.3 coord: 12..82 e-value: 3.5E-9 score: 36.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..89 score: 14.402318
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 156..230 score: 13.293717
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..119 e-value: 1.1E-30 score: 107.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 145..230 e-value: 5.7E-22 score: 79.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr015892.1	Sgr015892.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding