Sgr013199 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr013199
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	RRM domain-containing protein
Location	tig00153754: 82052 .. 82599 (+)
RNA-Seq Expression	Sgr013199
Synteny	Sgr013199

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACGAGTTTTGCAGGATTCAAGTGGTTTTGTTGATGAGAAGTATGAAAGCAAACTTTATATTGGTAACCTTGACCTCAGAATTACAGAGTAAGGAAAATTGTCGTCACAACATCTTCCAATGTATTTGTCTTCCAGATTTCCTCTTCTATATTTGAAATTGCATAAACTTGTTTCAGGGCGACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCCTGTGGCACACTCGTGGTCCAAAACGTGGAGAATCGCAGGGGTTTGCTTTTATTGAATACAGCTCCAACGAGGTAAGTTGCTTGGTTTGCCACTTCATTGCCATTGTCAAGCAATTCCTTAATTTTGCTTGTAAATTGAGAATGCAAGAAGCTAAATTGGCTAAAGAGAAGATGCATGGGAAATTAGCTTGTGGTCGCCCATTGGTCGTACGCCTTGCTAGTGAGAAGTACATGATCGACGCAACGAATAATACTTCCAGGGCAGCAGGCAAGTCAAGCAAATCGAGACTTGGTGGCAGCAATTATGGATAG

mRNA sequence

ATGGAACGAGTTTTGCAGGATTCAAGTGGTTTTGTTGATGAGAAGTATGAAAGCAAACTTTATATTGGTAACCTTGACCTCAGAATTACAGAGGCGACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCCTGTGGCACACTCGTGGTCCAAAACGTGGAGAATCGCAGGGGTTTGCTTTTATTGAATACAGCTCCAACGAGGTAAGTTGCTTGGTTTGCCACTTCATTGCCATTGTCAAGCAATTCCTTAATTTTGCTTGTAAATTGAGAATGCAAGAAGCTAAATTGGCTAAAGAGAAGATGCATGGGAAATTAGCTTGTGGTCGCCCATTGGTCGTACGCCTTGCTAGTGAGAAGTACATGATCGACGCAACGAATAATACTTCCAGGGCAGCAGGCAAGTCAAGCAAATCGAGACTTGGTGGCAGCAATTATGGATAG

Coding sequence (CDS)

ATGGAACGAGTTTTGCAGGATTCAAGTGGTTTTGTTGATGAGAAGTATGAAAGCAAACTTTATATTGGTAACCTTGACCTCAGAATTACAGAGGCGACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCCTGTGGCACACTCGTGGTCCAAAACGTGGAGAATCGCAGGGGTTTGCTTTTATTGAATACAGCTCCAACGAGGTAAGTTGCTTGGTTTGCCACTTCATTGCCATTGTCAAGCAATTCCTTAATTTTGCTTGTAAATTGAGAATGCAAGAAGCTAAATTGGCTAAAGAGAAGATGCATGGGAAATTAGCTTGTGGTCGCCCATTGGTCGTACGCCTTGCTAGTGAGAAGTACATGATCGACGCAACGAATAATACTTCCAGGGCAGCAGGCAAGTCAAGCAAATCGAGACTTGGTGGCAGCAATTATGGATAG

Protein sequence

MERVLQDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFAFIEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLASEKYMIDATNNTSRAAGKSSKSRLGGSNYG

Homology

[Close]

BLAST of Sgr013199 vs. NCBI nr
Match: XP_031741097.1 (probable RNA-binding protein 18 isoform X1 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 5.2e-59
Identity = 121/146 (82.88%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 7   DSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFAF 66
           DS+GFVDEK ESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGE +GFAF
Sbjct: 2   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67  IEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLASEKY 126
           IEYSS EVSCLV   IA VKQ L FACK+ MQEAKLAKEKMHGKLACGRPLVVRLASEK 
Sbjct: 62  IEYSSKEVSCLVYSLIASVKQLLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEKL 121

Query: 127 MIDATNNTSRAAGKSSKSRLGGSNYG 153
           M + TN+TSR A +S KSRLGGS+YG
Sbjct: 122 MTNTTNDTSRTASESRKSRLGGSSYG 147

[Close]

BLAST of Sgr013199 vs. NCBI nr
Match: XP_022157813.1 (probable RNA-binding protein 18 isoform X3 [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 7.5e-50
Identity = 111/149 (74.50%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 4   VLQDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQG 63
           ++ DSSGFVDEK ESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGE +G
Sbjct: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60

Query: 64  FAFIEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLAS 123
           FAFIEYSS E                         EAKLAKEKMHGKLACGRPLVVRLAS
Sbjct: 61  FAFIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLAS 120

Query: 124 EKYMIDATNNTSRAAGKSSKSRLGGSNYG 153
           EK MID T + SRAAG+SSKSRLGGSNYG
Sbjct: 121 EKCMIDTTKSISRAAGESSKSRLGGSNYG 124

[Close]

BLAST of Sgr013199 vs. NCBI nr
Match: XP_022157798.1 (probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1 probable RNA-binding protein 18 isoform X1 [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 7.5e-50
Identity = 111/149 (74.50%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 4   VLQDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQG 63
           ++ DSSGFVDEK ESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGE +G
Sbjct: 50  MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 109

Query: 64  FAFIEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLAS 123
           FAFIEYSS E                         EAKLAKEKMHGKLACGRPLVVRLAS
Sbjct: 110 FAFIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLAS 169

Query: 124 EKYMIDATNNTSRAAGKSSKSRLGGSNYG 153
           EK MID T + SRAAG+SSKSRLGGSNYG
Sbjct: 170 EKCMIDTTKSISRAAGESSKSRLGGSNYG 173

[Close]

BLAST of Sgr013199 vs. NCBI nr
Match: XP_022157809.1 (probable RNA-binding protein 18 isoform X2 [Momordica charantia])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 111/147 (75.51%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 6   QDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFA 65
           +DSSGFVDEK ESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGE +GFA
Sbjct: 21  KDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 80

Query: 66  FIEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLASEK 125
           FIEYSS E                         EAKLAKEKMHGKLACGRPLVVRLASEK
Sbjct: 81  FIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLASEK 140

Query: 126 YMIDATNNTSRAAGKSSKSRLGGSNYG 153
            MID T + SRAAG+SSKSRLGGSNYG
Sbjct: 141 CMIDTTKSISRAAGESSKSRLGGSNYG 142

[Close]

BLAST of Sgr013199 vs. NCBI nr
Match: XP_038875193.1 (probable RNA-binding protein 18 [Benincasa hispida] >XP_038875194.1 probable RNA-binding protein 18 [Benincasa hispida] >XP_038875195.1 probable RNA-binding protein 18 [Benincasa hispida] >XP_038875196.1 probable RNA-binding protein 18 [Benincasa hispida] >XP_038875197.1 probable RNA-binding protein 18 [Benincasa hispida] >XP_038875198.1 probable RNA-binding protein 18 [Benincasa hispida] >XP_038875199.1 probable RNA-binding protein 18 [Benincasa hispida])

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 104/148 (70.27%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 4   VLQDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQG 63
           ++ DS+GFVDEK ESKLYIGNLDLRITEA LIK+FSP+GKIISEDFLWHTRGPKRGE +G
Sbjct: 1   MVMDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPYGKIISEDFLWHTRGPKRGEPRG 60

Query: 64  FAFIEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLAS 123
           FAFIEYSS E                         EAKLAKEKMHGKLACGRPLVVRLAS
Sbjct: 61  FAFIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLAS 120

Query: 124 EKYMIDATNNTSRAAGKSSKSRLGGSNY 152
           E+++ + TN+TSRAAG+SSKSRLGGSNY
Sbjct: 121 ERFITNTTNDTSRAAGESSKSRLGGSNY 123

[Close]

BLAST of Sgr013199 vs. ExPASy Swiss-Prot
Match: Q6PBM8 (Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-09
Identity = 35/104 (33.65%), Postives = 54/104 (51.92%), Query Frame = 0


Query: 19  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFAFIEYSSNEVSCLV 78
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+ +G+ F+ + + E     
Sbjct: 24  RLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKE----- 83

Query: 79  CHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLA 123
                               EA+ A + ++GKLA  + LVVR A
Sbjct: 84  --------------------EAERAIQCLNGKLALSKKLVVRWA 102

[Close]

BLAST of Sgr013199 vs. ExPASy Swiss-Prot
Match: Q96H35 (Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.8e-09
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 8   SSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFAFI 67
           S G + E +  +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+ +G+ F+
Sbjct: 17  SEGSLQEGH--RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFV 76

Query: 68  EYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLA 123
                                 NF  K   QEA+ A + ++GKLA  + LVVR A
Sbjct: 77  ----------------------NFETK---QEAEQAIQCLNGKLALSKKLVVRWA 104

[Close]

BLAST of Sgr013199 vs. ExPASy Swiss-Prot
Match: Q9CR83 (Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.8e-09
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 8   SSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFAFI 67
           S G + E +  +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+ +G+ F+
Sbjct: 17  SEGSLQEGH--RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFV 76

Query: 68  EYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLA 123
                                 NF  K   QEA+ A + ++GKLA  + LVVR A
Sbjct: 77  ----------------------NFETK---QEAEQAIQCLNGKLALSKKLVVRWA 104

[Close]

BLAST of Sgr013199 vs. ExPASy Swiss-Prot
Match: Q5R6W3 (Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.8e-09
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 8   SSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFAFI 67
           S G + E +  +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+ +G+ F+
Sbjct: 17  SEGSLQEGH--RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFV 76

Query: 68  EYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLA 123
                                 NF  K   QEA+ A + ++GKLA  + LVVR A
Sbjct: 77  ----------------------NFETK---QEAEQAIQCLNGKLALSKKLVVRWA 104

[Close]

BLAST of Sgr013199 vs. ExPASy Swiss-Prot
Match: Q66J99 (Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-08
Identity = 36/104 (34.62%), Postives = 53/104 (50.96%), Query Frame = 0


Query: 19  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFAFIEYSSNEVSCLV 78
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+ +G+ F+           
Sbjct: 26  RLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFV----------- 85

Query: 79  CHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLA 123
                      NF  K    EA+ A   ++GK+A  + LVVR A
Sbjct: 86  -----------NFETK---AEAERAIHCLNGKMALSKKLVVRWA 104

[Close]

BLAST of Sgr013199 vs. ExPASy TrEMBL
Match: A0A6J1DUC5 (probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.6e-50
Identity = 111/149 (74.50%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 4   VLQDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQG 63
           ++ DSSGFVDEK ESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGE +G
Sbjct: 50  MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 109

Query: 64  FAFIEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLAS 123
           FAFIEYSS E                         EAKLAKEKMHGKLACGRPLVVRLAS
Sbjct: 110 FAFIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLAS 169

Query: 124 EKYMIDATNNTSRAAGKSSKSRLGGSNYG 153
           EK MID T + SRAAG+SSKSRLGGSNYG
Sbjct: 170 EKCMIDTTKSISRAAGESSKSRLGGSNYG 173

[Close]

BLAST of Sgr013199 vs. ExPASy TrEMBL
Match: A0A6J1DUD9 (probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.6e-50
Identity = 111/149 (74.50%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 4   VLQDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQG 63
           ++ DSSGFVDEK ESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGE +G
Sbjct: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60

Query: 64  FAFIEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLAS 123
           FAFIEYSS E                         EAKLAKEKMHGKLACGRPLVVRLAS
Sbjct: 61  FAFIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLAS 120

Query: 124 EKYMIDATNNTSRAAGKSSKSRLGGSNYG 153
           EK MID T + SRAAG+SSKSRLGGSNYG
Sbjct: 121 EKCMIDTTKSISRAAGESSKSRLGGSNYG 124

[Close]

BLAST of Sgr013199 vs. ExPASy TrEMBL
Match: A0A6J1DXL8 (probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.2e-50
Identity = 111/147 (75.51%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 6   QDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFA 65
           +DSSGFVDEK ESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGE +GFA
Sbjct: 21  KDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 80

Query: 66  FIEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLASEK 125
           FIEYSS E                         EAKLAKEKMHGKLACGRPLVVRLASEK
Sbjct: 81  FIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLASEK 140

Query: 126 YMIDATNNTSRAAGKSSKSRLGGSNYG 153
            MID T + SRAAG+SSKSRLGGSNYG
Sbjct: 141 CMIDTTKSISRAAGESSKSRLGGSNYG 142

[Close]

BLAST of Sgr013199 vs. ExPASy TrEMBL
Match: A0A5A7TLJ6 (Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00930 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.4e-47
Identity = 103/147 (70.07%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 6   QDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFA 65
           +DS+GFVDEK ESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGE +GFA
Sbjct: 33  EDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 92

Query: 66  FIEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLASEK 125
           FIEYSS E                         EAKLAKEKMHGKLACGRPLVVRLASEK
Sbjct: 93  FIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLASEK 152

Query: 126 YMIDATNNTSRAAGKSSKSRLGGSNYG 153
            M++  N+TS+AA +S KSRLGGS+YG
Sbjct: 153 LMVNTANDTSKAASESRKSRLGGSSYG 154

[Close]

BLAST of Sgr013199 vs. ExPASy TrEMBL
Match: A0A0A0KJM9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G140500 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.4e-47
Identity = 104/147 (70.75%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 6   QDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFA 65
           +DS+GFVDEK ESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGE +GFA
Sbjct: 33  EDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 92

Query: 66  FIEYSSNEVSCLVCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLASEK 125
           FIEYSS E                         EAKLAKEKMHGKLACGRPLVVRLASEK
Sbjct: 93  FIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLASEK 152

Query: 126 YMIDATNNTSRAAGKSSKSRLGGSNYG 153
            M + TN+TSR A +S KSRLGGS+YG
Sbjct: 153 LMTNTTNDTSRTASESRKSRLGGSSYG 154

[Close]

BLAST of Sgr013199 vs. TAIR 10
Match: AT5G03580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 4.9e-07
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 18 SKLYIGNLDLRITEATLIKMFSPFGKII----SEDFLWHTRGPKRGESQGFAFIEYSS 72
          + LYI NLD +++E  L  MFS FGK+I    ++DF        RGES+GFAFIE+ S
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDF--------RGESRGFAFIEFES 66

[Close]

BLAST of Sgr013199 vs. TAIR 10
Match: AT3G16380.1 (poly(A) binding protein 6 )

HSP 1 Score: 48.1 bits (113), Expect = 7.1e-06
Identity = 32/108 (29.63%), Postives = 51/108 (47.22%), Query Frame = 0


Query: 18  SKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFAFIEYSSNEVSCL 77
           S LY+ NL   + E  L ++F  +G+I+S   + H    + G S+GF F+ +S+ E    
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH----ENGRSKGFGFVCFSNCE---- 363

Query: 78  VCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLASEK 126
                                E+K AK  ++G L  G+P+VVR+A  K
Sbjct: 364 ---------------------ESKQAKRYLNGFLVDGKPIVVRVAERK 382

[Close]

BLAST of Sgr013199 vs. TAIR 10
Match: AT5G52545.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.0e-04
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 107 MHGKLACGRPLVVRLASEKYMIDATNNTS-RAAGKSSKSR-LGGSNYG 153
           MHG+LACGRPLVVRLASEK++ D++++ S R+  + +++R + GS+ G
Sbjct: 1   MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGSSSG 48

[Close]

BLAST of Sgr013199 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 20/74 (27.03%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 4  VLQDSSGFVDEKYESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQG 63
          +  ++S     K  + +Y+G +   +TE  L+ +FS +G+I+  + +   R    G+S+G
Sbjct: 22 ISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLI---RDKGTGKSKG 81

Query: 64 FAFIEYSSNEVSCL 78
          FAF+ Y     + L
Sbjct: 82 FAFLAYEDQRSTIL 92

[Close]

BLAST of Sgr013199 vs. TAIR 10
Match: AT2G36660.1 (poly(A) binding protein 7 )

HSP 1 Score: 42.0 bits (97), Expect = 5.1e-04
Identity = 30/108 (27.78%), Postives = 50/108 (46.30%), Query Frame = 0


Query: 18  SKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGESQGFAFIEYSSNEVSCL 77
           S +Y+ N+++ +TE  L K FS  G I S   +      ++G+S+GF F+ +S+ E    
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMC----DEKGKSKGFGFVCFSTPE---- 363

Query: 78  VCHFIAIVKQFLNFACKLRMQEAKLAKEKMHGKLACGRPLVVRLASEK 126
                                EA  A +  HG++  G+PL V +A +K
Sbjct: 364 ---------------------EAIDAVKTFHGQMFHGKPLYVAIAQKK 382

The following BLAST results are available for this feature:

BLAST of Sgr013199 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741097.1	5.2e-59	82.88	probable RNA-binding protein 18 isoform X1 [Cucumis sativus]	[more]
XP_022157813.1	7.5e-50	74.50	probable RNA-binding protein 18 isoform X3 [Momordica charantia]	[more]
XP_022157798.1	7.5e-50	74.50	probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1...	[more]
XP_022157809.1	1.3e-49	75.51	probable RNA-binding protein 18 isoform X2 [Momordica charantia]	[more]
XP_038875193.1	1.2e-47	70.27	probable RNA-binding protein 18 [Benincasa hispida] >XP_038875194.1 probable RNA...	[more]

BLAST of Sgr013199 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBM8	1.8e-09	33.65	Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1	[more]
Q96H35	8.8e-09	35.65	Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1	[more]
Q9CR83	8.8e-09	35.65	Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1	[more]
Q5R6W3	8.8e-09	35.65	Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1	[more]
Q66J99	5.7e-08	34.62	Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1	[more]

BLAST of Sgr013199 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUC5	3.6e-50	74.50	probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DUD9	3.6e-50	74.50	probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DXL8	6.2e-50	75.51	probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A5A7TLJ6	8.4e-47	70.07	Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A0A0KJM9	8.4e-47	70.75	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G140500 PE=4 SV...	[more]

BLAST of Sgr013199 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03580.1	4.9e-07	48.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G16380.1	7.1e-06	29.63	poly(A) binding protein 6	[more]
AT5G52545.1	1.0e-04	52.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G47120.1	1.3e-04	27.03	RNA recognition motif (RRM)-containing protein	[more]
AT2G36660.1	5.1e-04	27.78	poly(A) binding protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..96 e-value: 3.1E-6 score: 36.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..73 e-value: 5.5E-8 score: 32.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 18..124 score: 13.123163
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 15..134 e-value: 6.4E-19 score: 70.1
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 13..142
None	No IPR available	PANTHER	PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	coord: 13..142
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr013199.1	Sgr013199.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding