Sgr011686 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr011686
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	E3 ubiquitin-protein ligase RFWD3 isoform X1
Location	tig00153033: 125202 .. 125567 (+)
RNA-Seq Expression	Sgr011686
Synteny	Sgr011686

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCGGTGACGCAGGGCGAAGATGATGACGACGGGGAAGAAGAAGATGATGGCGAGGAAATAGAGGAAGAGCATGCAAAGGAGGATGTCGACAATGTTTTTGAGGCGTAATCGCCTAGGGCTTCACAAACCGGCCCTTCGACATCTGCTCAAGCTAGGGTTTCTTTTGATGCAACAAGGAATTGGGTTGAGGAAGAGGAAGACAAGTGGAGAAGAACCGAGGTAGGAGAAGCGAGTTCTTCGAATGGAGTTGGAAGCGTGGAATTTTCACAAGGAATTGAATGGAATCGAAATGAAATCGACGGCTTGTTTTGCCCTATTTGCATGGGGGCATGGACCAACTACGTTGACCACCATATTTAG

mRNA sequence

ATGTTGCCGGTGACGCAGGGCGAAGATGATGACGACGGGGAAGAAGAAGATGATGGCGAGGAAATAGAGGAAGAGCATGCAAAGGAGGATGTCGACAATGTTTTTGAGGCGAATTGGGTTGAGGAAGAGGAAGACAAGTGGAGAAGAACCGAGGTAGGAGAAGCGAGTTCTTCGAATGGAGTTGGAAGCGTGGAATTTTCACAAGGAATTGAATGGAATCGAAATGAAATCGACGGCTTGTTTTGCCCTATTTGCATGGGGGCATGGACCAACTACGTTGACCACCATATTTAG

Coding sequence (CDS)

ATGTTGCCGGTGACGCAGGGCGAAGATGATGACGACGGGGAAGAAGAAGATGATGGCGAGGAAATAGAGGAAGAGCATGCAAAGGAGGATGTCGACAATGTTTTTGAGGCGAATTGGGTTGAGGAAGAGGAAGACAAGTGGAGAAGAACCGAGGTAGGAGAAGCGAGTTCTTCGAATGGAGTTGGAAGCGTGGAATTTTCACAAGGAATTGAATGGAATCGAAATGAAATCGACGGCTTGTTTTGCCCTATTTGCATGGGGGCATGGACCAACTACGTTGACCACCATATTTAG

Protein sequence

MLPVTQGEDDDDGEEEDDGEEIEEEHAKEDVDNVFEANWVEEEEDKWRRTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDHHI

Homology

[Close]

BLAST of Sgr011686 vs. NCBI nr
Match: XP_022143754.1 (E3 ubiquitin-protein ligase RFWD3 isoform X1 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 9.8e-27
Identity = 76/122 (62.30%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 7   GEDDDDG-----------EEEDDGEEIEEEHAKEDVDNVFEA------------------ 66
           G DDDD            E EDDGEE EEEHA+ED D+V E                   
Sbjct: 13  GRDDDDDVLHVLVDGEQYEVEDDGEETEEEHAEEDADSVLEVQSPRASQTGPSASASSDG 72

Query: 67  --NWVEEEEDKWRRTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDH 98
             NWVEEEEDK RRTE GEASSSNGVGSVE SQG+EWNRNEIDGLFCPICM AWTNY DH
Sbjct: 73  ARNWVEEEEDKRRRTEGGEASSSNGVGSVEISQGVEWNRNEIDGLFCPICMEAWTNYGDH 132

[Close]

BLAST of Sgr011686 vs. NCBI nr
Match: KAG7027244.1 (E3 ubiquitin-protein ligase RFWD3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 72/111 (64.86%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 8   EDDDDGEEEDDGEEIEEEHAKEDVDNVFEAN---------------------WVEEEEDK 67
           E++DDGEE DDGEE  E HA+E+ DNV EA                      WVEEEEDK
Sbjct: 34  EEEDDGEETDDGEETVEGHAEENADNVIEAQSPRASQTGPGPSRSGQARVSFWVEEEEDK 93

Query: 68  WRRTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDHHI 98
            RRTE GEASSSNGVGS+E SQG EWNRNEIDGLFCPICM AWTNY DHHI
Sbjct: 94  RRRTEGGEASSSNGVGSLEISQGNEWNRNEIDGLFCPICMEAWTNYGDHHI 144

[Close]

BLAST of Sgr011686 vs. NCBI nr
Match: KAG6595223.1 (E3 ubiquitin-protein ligase RFWD3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 72/111 (64.86%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 8   EDDDDGEEEDDGEEIEEEHAKEDVDNVFEAN---------------------WVEEEEDK 67
           E++DDGEE DDGEE  E HA+E+ DNV EA                      WVEEEEDK
Sbjct: 34  EEEDDGEETDDGEETVEGHAEENADNVIEAQSPRASQTGPGPSRSGQARVSFWVEEEEDK 93

Query: 68  WRRTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDHHI 98
            RRTE GEASSSNGVGS+E SQG EWNRNEIDGLFCPICM AWTNY DHHI
Sbjct: 94  RRRTEGGEASSSNGVGSLEISQGNEWNRNEIDGLFCPICMEAWTNYGDHHI 144

[Close]

BLAST of Sgr011686 vs. NCBI nr
Match: XP_022972717.1 (E3 ubiquitin-protein ligase RFWD3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 71/109 (65.14%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 8   EDDDDGEEEDDGEEIEEEHAKEDVDNVFEAN-------------------WVEEEEDKWR 67
           E++DD EE DDGEE  E HA+E+ DNV EA                    WVEEEEDK R
Sbjct: 32  EEEDDDEETDDGEETVEGHAEENADNVIEAQSPRASQTGPSRSGQARVSFWVEEEEDKRR 91

Query: 68  RTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDHHI 98
           RT+ GEASSSNGVGSVE SQG EWNRNEIDGLFCPICM AWTNY DHHI
Sbjct: 92  RTDGGEASSSNGVGSVEISQGNEWNRNEIDGLFCPICMEAWTNYGDHHI 140

[Close]

BLAST of Sgr011686 vs. NCBI nr
Match: XP_023518105.1 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RFWD3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 71/109 (65.14%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 8   EDDDDGEEEDDGEEIEEEHAKEDVDNVFEAN-------------------WVEEEEDKWR 67
           E++DD EE DDGEE  E HA+E+ DNV EA                    WVEEEEDK R
Sbjct: 32  EEEDDDEETDDGEETVEGHAEENADNVIEAQSPRASQTGPSRSGQARVSFWVEEEEDKRR 91

Query: 68  RTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDHHI 98
           RTE GEASSSNGVGS+E SQG EWNRNEIDGLFCPICM AWTNY DHHI
Sbjct: 92  RTEGGEASSSNGVGSLEISQGNEWNRNEIDGLFCPICMEAWTNYGDHHI 140

[Close]

BLAST of Sgr011686 vs. ExPASy TrEMBL
Match: A0A6J1CQ96 (E3 ubiquitin-protein ligase RFWD3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013594 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.7e-27
Identity = 76/122 (62.30%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 7   GEDDDDG-----------EEEDDGEEIEEEHAKEDVDNVFEA------------------ 66
           G DDDD            E EDDGEE EEEHA+ED D+V E                   
Sbjct: 13  GRDDDDDVLHVLVDGEQYEVEDDGEETEEEHAEEDADSVLEVQSPRASQTGPSASASSDG 72

Query: 67  --NWVEEEEDKWRRTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDH 98
             NWVEEEEDK RRTE GEASSSNGVGSVE SQG+EWNRNEIDGLFCPICM AWTNY DH
Sbjct: 73  ARNWVEEEEDKRRRTEGGEASSSNGVGSVEISQGVEWNRNEIDGLFCPICMEAWTNYGDH 132

[Close]

BLAST of Sgr011686 vs. ExPASy TrEMBL
Match: A0A6J1IAX3 (E3 ubiquitin-protein ligase RFWD3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471236 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.8e-26
Identity = 71/109 (65.14%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 8   EDDDDGEEEDDGEEIEEEHAKEDVDNVFEAN-------------------WVEEEEDKWR 67
           E++DD EE DDGEE  E HA+E+ DNV EA                    WVEEEEDK R
Sbjct: 32  EEEDDDEETDDGEETVEGHAEENADNVIEAQSPRASQTGPSRSGQARVSFWVEEEEDKRR 91

Query: 68  RTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDHHI 98
           RT+ GEASSSNGVGSVE SQG EWNRNEIDGLFCPICM AWTNY DHHI
Sbjct: 92  RTDGGEASSSNGVGSVEISQGNEWNRNEIDGLFCPICMEAWTNYGDHHI 140

[Close]

BLAST of Sgr011686 vs. ExPASy TrEMBL
Match: A0A6J1ICD9 (E3 ubiquitin-protein ligase RFWD3 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471236 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.8e-26
Identity = 71/109 (65.14%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 8   EDDDDGEEEDDGEEIEEEHAKEDVDNVFEAN-------------------WVEEEEDKWR 67
           E++DD EE DDGEE  E HA+E+ DNV EA                    WVEEEEDK R
Sbjct: 32  EEEDDDEETDDGEETVEGHAEENADNVIEAQSPRASQTGPSRSGQARVSFWVEEEEDKRR 91

Query: 68  RTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDHHI 98
           RT+ GEASSSNGVGSVE SQG EWNRNEIDGLFCPICM AWTNY DHHI
Sbjct: 92  RTDGGEASSSNGVGSVEISQGNEWNRNEIDGLFCPICMEAWTNYGDHHI 140

[Close]

BLAST of Sgr011686 vs. ExPASy TrEMBL
Match: A0A6J1I5M2 (E3 ubiquitin-protein ligase RFWD3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471236 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.8e-26
Identity = 71/109 (65.14%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 8   EDDDDGEEEDDGEEIEEEHAKEDVDNVFEAN-------------------WVEEEEDKWR 67
           E++DD EE DDGEE  E HA+E+ DNV EA                    WVEEEEDK R
Sbjct: 32  EEEDDDEETDDGEETVEGHAEENADNVIEAQSPRASQTGPSRSGQARVSFWVEEEEDKRR 91

Query: 68  RTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDHHI 98
           RT+ GEASSSNGVGSVE SQG EWNRNEIDGLFCPICM AWTNY DHHI
Sbjct: 92  RTDGGEASSSNGVGSVEISQGNEWNRNEIDGLFCPICMEAWTNYGDHHI 140

[Close]

BLAST of Sgr011686 vs. ExPASy TrEMBL
Match: A0A6J1HFZ1 (E3 ubiquitin-protein ligase RFWD3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463210 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.6e-25
Identity = 70/109 (64.22%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 8   EDDDDGEEEDDGEEIEEEHAKEDVDNVFEAN-------------------WVEEEEDKWR 67
           E++DD EE DDGEE  E HA+E+ DNV EA                    WVEEEEDK R
Sbjct: 32  EEEDDDEETDDGEETVEGHAEENADNVIEAQSPRASQTGPSRSGQARVSFWVEEEEDKRR 91

Query: 68  RTEVGEASSSNGVGSVEFSQGIEWNRNEIDGLFCPICMGAWTNYVDHHI 98
           RTE GE SSSNGVGSVE SQG EWNRNEIDGLFCPICM AWTNY +HHI
Sbjct: 92  RTEGGEGSSSNGVGSVEISQGNEWNRNEIDGLFCPICMEAWTNYGEHHI 140

The following BLAST results are available for this feature:

BLAST of Sgr011686 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143754.1	9.8e-27	62.30	E3 ubiquitin-protein ligase RFWD3 isoform X1 [Momordica charantia]	[more]
KAG7027244.1	3.7e-26	64.86	E3 ubiquitin-protein ligase RFWD3, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6595223.1	3.7e-26	64.86	E3 ubiquitin-protein ligase RFWD3, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022972717.1	1.4e-25	65.14	E3 ubiquitin-protein ligase RFWD3 isoform X1 [Cucurbita maxima]	[more]
XP_023518105.1	1.4e-25	65.14	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RFWD3 [Cucurbita pepo subsp. pe...	[more]

BLAST of Sgr011686 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr011686 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ96	4.7e-27	62.30	E3 ubiquitin-protein ligase RFWD3 isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1IAX3	6.8e-26	65.14	E3 ubiquitin-protein ligase RFWD3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1ICD9	6.8e-26	65.14	E3 ubiquitin-protein ligase RFWD3 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1I5M2	6.8e-26	65.14	E3 ubiquitin-protein ligase RFWD3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1HFZ1	2.6e-25	64.22	E3 ubiquitin-protein ligase RFWD3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Sgr011686 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..27
None	No IPR available	PANTHER	PTHR16047:SF13	E3 UBIQUITIN-PROTEIN LIGASE	coord: 9..97
IPR037381	E3 ubiquitin-protein ligase RFWD3	PANTHER	PTHR16047	RFWD3 PROTEIN	coord: 9..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr011686.1	Sgr011686.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0036297	interstrand cross-link repair
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004842	ubiquitin-protein transferase activity