Sgr011560 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr011560
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Descriptionpentatricopeptide repeat-containing protein At1g62350
Locationtig00152985: 65017 .. 65463 (+)
RNA-Seq ExpressionSgr011560
SyntenySgr011560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCGTCTTGCTCCAAATCTTCTTCGAAGAACATCAAACAGGGCTACTGCAACAATCCCTTTTCATCTCTTTTCCCCGTACCCATTCTTCCAACACGATCAAGTACAGCAACAATTGCTGCCACGCTTTATCACTGCCTCCGCTTCCAGCCCTACCCTCTCCATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTAATCGCCGTCAAAGAGCTCAAGAGGCTTCAGTCCAATCTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGATCTTGTCGCAGTTCTCGTGGAGCTTCAGAGACAAAACCAGGTCTTTCTATGCATGAAGGTCCTACCCTCTTCTGCTCTCTTTCTCTCTATCTCTTTTCCCTCCATTGCATATATTAGCTTTTTCAGGAAGATAAAGTTGTATGGTTCTTAG

mRNA sequence

ATGCTGCGTCTTGCTCCAAATCTTCTTCGAAGAACATCAAACAGGGCTACTGCAACAATCCCTTTTCATCTCTTTTCCCCGTACCCATTCTTCCAACACGATCAAGTACAGCAACAATTGCTGCCACGCTTTATCACTGCCTCCGCTTCCAGCCCTACCCTCTCCATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTAATCGCCGTCAAAGAGCTCAAGAGGCTTCAGTCCAATCTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGATCTTGTCGCAGTTCTCGTGGAGCTTCAGAGACAAAACCAGGTCTTTCTATGCATGAAGGTCCTACCCTCTTCTGCTCTCTTTCTCTCTATCTCTTTTCCCTCCATTGCATATATTAGCTTTTTCAGGAAGATAAAGTTGTATGGTTCTTAG

Coding sequence (CDS)

ATGCTGCGTCTTGCTCCAAATCTTCTTCGAAGAACATCAAACAGGGCTACTGCAACAATCCCTTTTCATCTCTTTTCCCCGTACCCATTCTTCCAACACGATCAAGTACAGCAACAATTGCTGCCACGCTTTATCACTGCCTCCGCTTCCAGCCCTACCCTCTCCATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTAATCGCCGTCAAAGAGCTCAAGAGGCTTCAGTCCAATCTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGATCTTGTCGCAGTTCTCGTGGAGCTTCAGAGACAAAACCAGGTCTTTCTATGCATGAAGGTCCTACCCTCTTCTGCTCTCTTTCTCTCTATCTCTTTTCCCTCCATTGCATATATTAGCTTTTTCAGGAAGATAAAGTTGTATGGTTCTTAG

Protein sequence

MLRLAPNLLRRTSNRATATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWRRKKEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKVLPSSALFLSISFPSIAYISFFRKIKLYGS
Homology
BLAST of Sgr011560 vs. NCBI nr
Match: XP_022153223.1 (pentatricopeptide repeat-containing protein At1g62350 [Momordica charantia])

HSP 1 Score: 187.6 bits (475), Expect = 7.9e-44
Identity = 102/121 (84.30%), Postives = 105/121 (86.78%), Query Frame = 0

Query: 1   MLRLAPNLLRRTSNRA--TATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWR 60
           MLRL PNLLRR  NR   TATIPFHL SP  FF  DQ+QQQ L RFIT SASSP+LSIWR
Sbjct: 1   MLRLVPNLLRRAPNRVTRTATIPFHLSSPITFFDRDQLQQQSLFRFITGSASSPSLSIWR 60

Query: 61  RKKEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK 120
           RKKEMGKEGLI VKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQ QVFLCMK
Sbjct: 61  RKKEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQKQVFLCMK 120

BLAST of Sgr011560 vs. NCBI nr
Match: XP_023531705.1 (pentatricopeptide repeat-containing protein At1g62350 [Cucurbita pepo subsp. pepo] >XP_023531706.1 pentatricopeptide repeat-containing protein At1g62350 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.1 bits (466), Expect = 8.7e-43
Identity = 97/119 (81.51%), Postives = 106/119 (89.08%), Query Frame = 0

Query: 1   MLRLAPNLLRRTSNRATATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWRRK 60
           MLR APNLLRR SNRAT+TI  + F+   FF+H + QQQLL RFIT SASSP+LS+WRRK
Sbjct: 1   MLRFAPNLLRRFSNRATSTIHLYRFTHCTFFEHHRPQQQLLLRFITGSASSPSLSVWRRK 60

Query: 61  KEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKV 120
           KEMGKEGLI VKELKR+QSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK+
Sbjct: 61  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKL 119

BLAST of Sgr011560 vs. NCBI nr
Match: XP_022966084.1 (pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima] >XP_022966085.1 pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 98/119 (82.35%), Postives = 105/119 (88.24%), Query Frame = 0

Query: 1   MLRLAPNLLRRTSNRATATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWRRK 60
           MLR APNLLRR SN AT+TI  + F+   FF+H + QQQLL RFIT SASSP+LSIWRRK
Sbjct: 1   MLRFAPNLLRRISNSATSTIHLYRFTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKV 120
           KEMGKEGLI VKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK+
Sbjct: 61  KEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKL 119

BLAST of Sgr011560 vs. NCBI nr
Match: KAG7022139.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 2.5e-42
Identity = 97/119 (81.51%), Postives = 105/119 (88.24%), Query Frame = 0

Query: 1   MLRLAPNLLRRTSNRATATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWRRK 60
           MLR APNLLRR SN AT+TI  + F+   FF+H + QQQLL RFIT SASSP+LSIWRRK
Sbjct: 35  MLRFAPNLLRRFSNSATSTIHLYRFTDCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 94

Query: 61  KEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKV 120
           KEMGKEGLI VKELKR+QSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK+
Sbjct: 95  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKL 153

BLAST of Sgr011560 vs. NCBI nr
Match: KAG6588226.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182.6 bits (462), Expect = 2.5e-42
Identity = 97/119 (81.51%), Postives = 105/119 (88.24%), Query Frame = 0

Query: 1   MLRLAPNLLRRTSNRATATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWRRK 60
           MLR APNLLRR SN AT+TI  + F+   FF+H + QQQLL RFIT SASSP+LSIWRRK
Sbjct: 67  MLRFAPNLLRRFSNSATSTIHLYRFTDCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 126

Query: 61  KEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKV 120
           KEMGKEGLI VKELKR+QSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK+
Sbjct: 127 KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKL 185

BLAST of Sgr011560 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-17
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 63  MGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKV 120
           M KEGLIA KELKRLQ+  +RLDRFI SHVSRLLKSDLV+VL E QRQNQVFLCMK+
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKL 57

BLAST of Sgr011560 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 52  PTLSIWRRKKEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQN 111
           P   +WR KK +GKE L  +  LKRL+ +  +LD+FI +HV RLLK D++AV+ EL+RQ 
Sbjct: 62  PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 121

Query: 112 QVFLCMKV 120
           +  L +K+
Sbjct: 122 ETALAIKM 129

BLAST of Sgr011560 vs. ExPASy TrEMBL
Match: A0A6J1DGX4 (pentatricopeptide repeat-containing protein At1g62350 OS=Momordica charantia OX=3673 GN=LOC111020768 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.8e-44
Identity = 102/121 (84.30%), Postives = 105/121 (86.78%), Query Frame = 0

Query: 1   MLRLAPNLLRRTSNRA--TATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWR 60
           MLRL PNLLRR  NR   TATIPFHL SP  FF  DQ+QQQ L RFIT SASSP+LSIWR
Sbjct: 1   MLRLVPNLLRRAPNRVTRTATIPFHLSSPITFFDRDQLQQQSLFRFITGSASSPSLSIWR 60

Query: 61  RKKEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK 120
           RKKEMGKEGLI VKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQ QVFLCMK
Sbjct: 61  RKKEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQKQVFLCMK 120

BLAST of Sgr011560 vs. ExPASy TrEMBL
Match: A0A6J1HQL7 (pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita maxima OX=3661 GN=LOC111465833 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.2e-43
Identity = 98/119 (82.35%), Postives = 105/119 (88.24%), Query Frame = 0

Query: 1   MLRLAPNLLRRTSNRATATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWRRK 60
           MLR APNLLRR SN AT+TI  + F+   FF+H + QQQLL RFIT SASSP+LSIWRRK
Sbjct: 1   MLRFAPNLLRRISNSATSTIHLYRFTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKV 120
           KEMGKEGLI VKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK+
Sbjct: 61  KEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKL 119

BLAST of Sgr011560 vs. ExPASy TrEMBL
Match: A0A5D3DWI7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G001060 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.6e-42
Identity = 100/139 (71.94%), Postives = 109/139 (78.42%), Query Frame = 0

Query: 1   MLRLAPNLLRRTSNRATATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWRRK 60
           MLRLAPNLLR+ S+   ++ PFH FS   F   D +QQQLL RFI  SASSP+LSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKVL 120
           KEMGKEGLI VKELKRLQSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMKV 
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKVC 120

Query: 121 PSSALFLSISFPSIAYISF 140
           P     L   FP +A++ F
Sbjct: 121 PHFLALLLSLFPFMAHVEF 139

BLAST of Sgr011560 vs. ExPASy TrEMBL
Match: A0A6J1EQI1 (pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita moschata OX=3662 GN=LOC111436516 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.0e-41
Identity = 96/119 (80.67%), Postives = 104/119 (87.39%), Query Frame = 0

Query: 1   MLRLAPNLLRRTSNRATATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWRRK 60
           MLR APNLLRR SN AT+TI  +  +   FF+H + QQQLL RFIT SASSP+LSIWRRK
Sbjct: 1   MLRFAPNLLRRFSNSATSTIHVYRLTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKV 120
           KEMGKEGLI VKELKR+QSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK+
Sbjct: 61  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKL 119

BLAST of Sgr011560 vs. ExPASy TrEMBL
Match: A0A0A0LXS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629100 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.6e-40
Identity = 94/118 (79.66%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 1   MLRLAPNLLRRTSNRATATIPFHLFSPYPFFQHDQVQQQLLPRFITASASSPTLSIWRRK 60
           MLRLAPNLLR+ S+   ++ PFH FS   F   D +QQQLL RFIT SASSP+LSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMK 119
           KEMGKEGLI VKELKRLQSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMK
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMK 118

BLAST of Sgr011560 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-18
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 63  MGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKV 120
           M KEGLIA KELKRLQ+  +RLDRFI SHVSRLLKSDLV+VL E QRQNQVFLCMK+
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKL 57

BLAST of Sgr011560 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 7.9e-10
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 52  PTLSIWRRKKEMGKEGLIAVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQN 111
           P   +WR KK +GKE L  +  LKRL+ +  +LD+FI +HV RLLK D++AV+ EL+RQ 
Sbjct: 62  PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 121

Query: 112 QVFLCMKV 120
           +  L +K+
Sbjct: 122 ETALAIKM 129

BLAST of Sgr011560 vs. TAIR 10
Match: AT3G42570.1 (peroxidase family protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.4e-08
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0

Query: 60 KKEMGKEGLIAVKELKRLQSNLIRLDRFISSHVS 94
          KKE  KEGLIA KELKRLQ+NL+RLDRFI SH S
Sbjct: 4  KKEKSKEGLIAAKELKRLQTNLVRLDRFIDSHPS 37

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022153223.17.9e-4484.30pentatricopeptide repeat-containing protein At1g62350 [Momordica charantia][more]
XP_023531705.18.7e-4381.51pentatricopeptide repeat-containing protein At1g62350 [Cucurbita pepo subsp. pep... [more]
XP_022966084.11.5e-4282.35pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima] >XP_022... [more]
KAG7022139.12.5e-4281.51Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6588226.12.5e-4281.51Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
Match NameE-valueIdentityDescription
Q1PFH73.8e-1780.70Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX... [more]
Q9STF91.1e-0847.06Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Match NameE-valueIdentityDescription
A0A6J1DGX43.8e-4484.30pentatricopeptide repeat-containing protein At1g62350 OS=Momordica charantia OX=... [more]
A0A6J1HQL77.2e-4382.35pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita maxima OX=366... [more]
A0A5D3DWI71.6e-4271.94Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1EQI11.0e-4180.67pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita moschata OX=3... [more]
A0A0A0LXS92.6e-4079.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G62350.12.7e-1880.70Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G46870.17.9e-1047.06Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G42570.17.4e-0879.41peroxidase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 62..129
e-value: 7.8E-10
score: 40.6
IPR044795Pentatricopeptide repeat-containing protein THA8L-likePANTHERPTHR46870PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTICcoord: 2..119
NoneNo IPR availablePANTHERPTHR46870:SF1BNAC09G13590D PROTEINcoord: 2..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr011560.1Sgr011560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding