Sed0028237 (gene) Chayote v1

Overview
NameSed0028237
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
LocationLG06: 953096 .. 953539 (+)
RNA-Seq ExpressionSed0028237
SyntenySed0028237
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAGCAAGAGCGTTTTACCAAATACATCAACCTACAATTCTATGATTTCCATGTATTGTCATCGCGGGCAAGAACACAAGGCTATGGAATTGCTTGAGGAGATGGAGAAATCAGGGATTTGTGAACCTGATGTCCAGACATATTACTCATTGCTTAAATCCTGCTTTAGAACTGAAAATACAGATAATGTTCTGAGGAAGTTGTTGGATGATATGATAAATAAACATCATCTGAGTCTTGATATATGTACCTATTCCCTTCTAATTCATGGCCTTTGTAGAGCAAATAAGTGTGAGTGGGCCTATCAGCTATTTGTGAAGATGATTGGTCAAGATATAAAGCCAAGATACATTACATGTCAACTTCTTTTGGATGAAGTTAAGCAGAAGAACATGGATGAATTTGCTGATAGGATTGAAGATGTTATGAAAAAATTGTGA

mRNA sequence

ATGCCGAGCAAGAGCGTTTTACCAAATACATCAACCTACAATTCTATGATTTCCATGTATTGTCATCGCGGGCAAGAACACAAGGCTATGGAATTGCTTGAGGAGATGGAGAAATCAGGGATTTGTGAACCTGATGTCCAGACATATTACTCATTGCTTAAATCCTGCTTTAGAACTGAAAATACAGATAATGTTCTGAGGAAGTTGTTGGATGATATGATAAATAAACATCATCTGAGTCTTGATATATGTACCTATTCCCTTCTAATTCATGGCCTTTGTAGAGCAAATAAGTGTGAGTGGGCCTATCAGCTATTTGTGAAGATGATTGGTCAAGATATAAAGCCAAGATACATTACATGTCAACTTCTTTTGGATGAAGTTAAGCAGAAGAACATGGATGAATTTGCTGATAGGATTGAAGATGTTATGAAAAAATTGTGA

Coding sequence (CDS)

ATGCCGAGCAAGAGCGTTTTACCAAATACATCAACCTACAATTCTATGATTTCCATGTATTGTCATCGCGGGCAAGAACACAAGGCTATGGAATTGCTTGAGGAGATGGAGAAATCAGGGATTTGTGAACCTGATGTCCAGACATATTACTCATTGCTTAAATCCTGCTTTAGAACTGAAAATACAGATAATGTTCTGAGGAAGTTGTTGGATGATATGATAAATAAACATCATCTGAGTCTTGATATATGTACCTATTCCCTTCTAATTCATGGCCTTTGTAGAGCAAATAAGTGTGAGTGGGCCTATCAGCTATTTGTGAAGATGATTGGTCAAGATATAAAGCCAAGATACATTACATGTCAACTTCTTTTGGATGAAGTTAAGCAGAAGAACATGGATGAATTTGCTGATAGGATTGAAGATGTTATGAAAAAATTGTGA

Protein sequence

MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTENTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYITCQLLLDEVKQKNMDEFADRIEDVMKKL
Homology
BLAST of Sed0028237 vs. NCBI nr
Match: XP_022966771.1 (pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 128/147 (87.07%), Postives = 137/147 (93.20%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MPSKSVLPNTSTYNSMISMYCHR QE KAM+LLEEMEKSG+C+PDVQTYY LLKSCFRT 
Sbjct: 364 MPSKSVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 423

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
            TDNVL KLLDDM+NK HLSLDI TYSLLIHGLCRANKCEWAYQLF KM+GQDIKPRY+T
Sbjct: 424 KTDNVLSKLLDDMMNKQHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMVGQDIKPRYLT 483

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMKKL 148
           C+LLLDEVKQKNMDE A+RIED+MKKL
Sbjct: 484 CKLLLDEVKQKNMDEVAERIEDIMKKL 510

BLAST of Sed0028237 vs. NCBI nr
Match: XP_023541614.1 (pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-67
Identity = 127/147 (86.39%), Postives = 136/147 (92.52%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MPSKSVLPNTSTYNSMISMYCHR QE KAM+LLEEMEKSG+C+PDVQTYY LLKSCFRT 
Sbjct: 364 MPSKSVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 423

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
            TDNVL KLLDDM+NK HLSLDI TYSLLIHGLCR+NKCEWAYQLF  MIGQDIKPRY+T
Sbjct: 424 KTDNVLSKLLDDMMNKQHLSLDISTYSLLIHGLCRSNKCEWAYQLFETMIGQDIKPRYLT 483

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMKKL 148
           C+LLLDEVKQKNMDE A+RIED+MKKL
Sbjct: 484 CKLLLDEVKQKNMDEVAERIEDIMKKL 510

BLAST of Sed0028237 vs. NCBI nr
Match: XP_022944939.1 (pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Cucurbita moschata] >XP_022944940.1 pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Cucurbita moschata])

HSP 1 Score: 265.0 bits (676), Expect = 3.8e-67
Identity = 128/147 (87.07%), Postives = 135/147 (91.84%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MPSKSVLPNTSTYNSMISMYCHR QE KAM+LL EMEKSG+C+PDVQTYY LLKSCFRT 
Sbjct: 364 MPSKSVLPNTSTYNSMISMYCHRAQEQKAMKLLGEMEKSGLCKPDVQTYYPLLKSCFRTG 423

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
            TDNVL KLLDDMINK HLSLDI TYSLLIHGLCRANKCEWAYQLF  MIGQDIKPRY+T
Sbjct: 424 KTDNVLSKLLDDMINKQHLSLDISTYSLLIHGLCRANKCEWAYQLFETMIGQDIKPRYLT 483

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMKKL 148
           C+LLLDEVKQKNMDE A+RIED+MKKL
Sbjct: 484 CKLLLDEVKQKNMDEVAERIEDIMKKL 510

BLAST of Sed0028237 vs. NCBI nr
Match: KAG7012750.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.2 bits (674), Expect = 6.6e-67
Identity = 127/147 (86.39%), Postives = 134/147 (91.16%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MPSKSVLPNTSTYNSMISMYCHR QE  AM+LLEEMEKSG+C+PDVQTYY LLKSCFRT 
Sbjct: 364 MPSKSVLPNTSTYNSMISMYCHRAQEQNAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 423

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
            TDNVL KLLDDMINK HLSLDI TYSLLIHGLCRANKCEWAYQLF  MIGQDIKPRY+T
Sbjct: 424 KTDNVLSKLLDDMINKQHLSLDISTYSLLIHGLCRANKCEWAYQLFETMIGQDIKPRYLT 483

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMKKL 148
           C+LLLDEVKQKNMDE  +RIED+MKKL
Sbjct: 484 CKLLLDEVKQKNMDEVGERIEDIMKKL 510

BLAST of Sed0028237 vs. NCBI nr
Match: KAG6573665.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264.2 bits (674), Expect = 6.6e-67
Identity = 127/147 (86.39%), Postives = 134/147 (91.16%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MPSKSVLPNTSTYNSMISMYCHR QE  AM+LLEEMEKSG+C+PDVQTYY LLKSCFRT 
Sbjct: 364 MPSKSVLPNTSTYNSMISMYCHRAQEQNAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 423

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
            TDNVL KLLDDMINK HLSLDI TYSLLIHGLCRANKCEWAYQLF  MIGQDIKPRY+T
Sbjct: 424 KTDNVLSKLLDDMINKQHLSLDISTYSLLIHGLCRANKCEWAYQLFETMIGQDIKPRYLT 483

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMKKL 148
           C+LLLDEVKQKNMDE  +RIED+MKKL
Sbjct: 484 CKLLLDEVKQKNMDEVGERIEDIMKKL 510

BLAST of Sed0028237 vs. ExPASy Swiss-Prot
Match: Q9M8W9 (Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g04130 PE=2 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 90/145 (62.07%), Postives = 107/145 (73.79%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MP   V  NTSTYNSMI+MYCH  +E KA+ELL+EME S +C PDV TY  LL+SCF+  
Sbjct: 356 MPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRG 415

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
           +   V  KLL +M+ KHHLSLD  TY+ LI  LCRAN CEWAY LF +MI QDI PR+ T
Sbjct: 416 DVVEV-GKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRT 475

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMK 146
           C LLL+EVK+KNM E A+RIE +MK
Sbjct: 476 CLLLLEEVKKKNMHESAERIEHIMK 499

BLAST of Sed0028237 vs. ExPASy Swiss-Prot
Match: Q9LUJ4 (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22670 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.9e-17
Identity = 53/147 (36.05%), Postives = 87/147 (59.18%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEM--EKSGICEPDVQTYYSLLKSCFR 60
           M ++ V  +   YN+MIS   H  ++  A+ LL+ M  E+   C P+V+TY  LLK C  
Sbjct: 404 MTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCH 463

Query: 61  TENTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRY 120
            +    +L  LL  M+ K+ +S+D+ TY LLI GLC + K E A   F + + + + PR 
Sbjct: 464 KKKM-KLLGILLHHMV-KNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRD 523

Query: 121 ITCQLLLDEVKQKNMDEFADRIEDVMK 146
            TC++L+DE+++KNM E   +I+ +++
Sbjct: 524 STCKMLVDELEKKNMAEAKLKIQSLVQ 548

BLAST of Sed0028237 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-13
Identity = 44/144 (30.56%), Postives = 78/144 (54.17%), Query Frame = 0

Query: 3   SKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTENT 62
           SK ++PNT TYN+++  +C  G+ + A EL +EM   G+  P V TY  LL         
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV-PPSVVTYGILLDGLCDNGEL 472

Query: 63  DNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYITCQ 122
           +  L   + + + K  ++L I  Y+++IHG+C A+K + A+ LF  +  + +KP  +T  
Sbjct: 473 NKALE--IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 532

Query: 123 LLLDEVKQKNMDEFADRIEDVMKK 147
           +++  + +K     AD +   MK+
Sbjct: 533 VMIGGLCKKGSLSEADMLFRKMKE 553

BLAST of Sed0028237 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.2e-12
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           + SK +LP+  T+NS+I   C       AMEL EEM   G CEPD  TY  L+ S     
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG-CEPDEFTYNMLIDSLCSKG 450

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
             D  L  L    +     +  + TY+ LI G C+ANK   A ++F +M    +    +T
Sbjct: 451 KLDEALNML--KQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 510

Query: 121 CQLLLDEVKQKNMDEFADRIEDVM 145
              L+D + +    E A ++ D M
Sbjct: 511 YNTLIDGLCKSRRVEDAAQLMDQM 531

BLAST of Sed0028237 vs. ExPASy Swiss-Prot
Match: P0C7Q7 (Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12700 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 41/146 (28.08%), Postives = 81/146 (55.48%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           M ++ + PN  TYN+++  YC + +  +A  +L+ M ++  C PD+ T+ SL+K     +
Sbjct: 324 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPDIVTFTSLIKGYCMVK 383

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
             D+ ++   +  I+K  L  +  TYS+L+ G C++ K + A +LF +M+   + P  +T
Sbjct: 384 RVDDGMKVFRN--ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMT 443

Query: 121 CQLLLDEV-KQKNMDEFADRIEDVMK 146
             +LLD +     +++  +  ED+ K
Sbjct: 444 YGILLDGLCDNGKLEKALEIFEDLQK 466

BLAST of Sed0028237 vs. ExPASy TrEMBL
Match: A0A6J1HQ84 (pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111466381 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 128/147 (87.07%), Postives = 137/147 (93.20%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MPSKSVLPNTSTYNSMISMYCHR QE KAM+LLEEMEKSG+C+PDVQTYY LLKSCFRT 
Sbjct: 364 MPSKSVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 423

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
            TDNVL KLLDDM+NK HLSLDI TYSLLIHGLCRANKCEWAYQLF KM+GQDIKPRY+T
Sbjct: 424 KTDNVLSKLLDDMMNKQHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMVGQDIKPRYLT 483

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMKKL 148
           C+LLLDEVKQKNMDE A+RIED+MKKL
Sbjct: 484 CKLLLDEVKQKNMDEVAERIEDIMKKL 510

BLAST of Sed0028237 vs. ExPASy TrEMBL
Match: A0A6J1FZG9 (pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111449323 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.9e-67
Identity = 128/147 (87.07%), Postives = 135/147 (91.84%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MPSKSVLPNTSTYNSMISMYCHR QE KAM+LL EMEKSG+C+PDVQTYY LLKSCFRT 
Sbjct: 364 MPSKSVLPNTSTYNSMISMYCHRAQEQKAMKLLGEMEKSGLCKPDVQTYYPLLKSCFRTG 423

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
            TDNVL KLLDDMINK HLSLDI TYSLLIHGLCRANKCEWAYQLF  MIGQDIKPRY+T
Sbjct: 424 KTDNVLSKLLDDMINKQHLSLDISTYSLLIHGLCRANKCEWAYQLFETMIGQDIKPRYLT 483

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMKKL 148
           C+LLLDEVKQKNMDE A+RIED+MKKL
Sbjct: 484 CKLLLDEVKQKNMDEVAERIEDIMKKL 510

BLAST of Sed0028237 vs. ExPASy TrEMBL
Match: A0A6J1DD08 (pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111019649 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 120/147 (81.63%), Postives = 133/147 (90.48%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MPSK VLPNTSTYNSMISMYCH  +E KAM+L++EME SG+C+PDVQTYY LLKSCFRT 
Sbjct: 346 MPSKGVLPNTSTYNSMISMYCHGAREEKAMKLVKEMENSGVCKPDVQTYYPLLKSCFRTG 405

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
            T+ +L KLLD+M+NKHHLSLDI TYSLLIHGLCRANKCEWAYQLF KMIGQDIKPRY+T
Sbjct: 406 KTEYILSKLLDEMMNKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMIGQDIKPRYLT 465

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMKKL 148
           CQLLLDEVKQKNMDE ADRIE ++KKL
Sbjct: 466 CQLLLDEVKQKNMDEVADRIEGILKKL 492

BLAST of Sed0028237 vs. ExPASy TrEMBL
Match: A0A1S3BE82 (pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103488914 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.0e-62
Identity = 120/147 (81.63%), Postives = 128/147 (87.07%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MPSKSVLPNTSTYNSMISMYC R +E KA +LLEEMEKSG C+PDVQTYY LLKSCFR  
Sbjct: 371 MPSKSVLPNTSTYNSMISMYCRRAREEKARKLLEEMEKSGYCKPDVQTYYPLLKSCFRNG 430

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
            TD  L  LLD+M NKHHLSLDI TYSLLIHGLCRANKC+WAYQLF KMI QDIKPRY+T
Sbjct: 431 KTDYDLSNLLDEMTNKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYLT 490

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMKKL 148
           CQLLLDEVKQKNMD+ ADRIE +MKKL
Sbjct: 491 CQLLLDEVKQKNMDKVADRIEGIMKKL 517

BLAST of Sed0028237 vs. ExPASy TrEMBL
Match: A0A5A7SWG7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002030 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.0e-62
Identity = 120/147 (81.63%), Postives = 128/147 (87.07%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MPSKSVLPNTSTYNSMISMYC R +E KA +LLEEMEKSG C+PDVQTYY LLKSCFR  
Sbjct: 371 MPSKSVLPNTSTYNSMISMYCRRAREEKARKLLEEMEKSGYCKPDVQTYYPLLKSCFRNG 430

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
            TD  L  LLD+M NKHHLSLDI TYSLLIHGLCRANKC+WAYQLF KMI QDIKPRY+T
Sbjct: 431 KTDYDLSNLLDEMTNKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYLT 490

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMKKL 148
           CQLLLDEVKQKNMD+ ADRIE +MKKL
Sbjct: 491 CQLLLDEVKQKNMDKVADRIEGIMKKL 517

BLAST of Sed0028237 vs. TAIR 10
Match: AT3G04130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-45
Identity = 90/145 (62.07%), Postives = 107/145 (73.79%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MP   V  NTSTYNSMI+MYCH  +E KA+ELL+EME S +C PDV TY  LL+SCF+  
Sbjct: 356 MPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRG 415

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
           +   V  KLL +M+ KHHLSLD  TY+ LI  LCRAN CEWAY LF +MI QDI PR+ T
Sbjct: 416 DVVEV-GKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRT 475

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMK 146
           C LLL+EVK+KNM E A+RIE +MK
Sbjct: 476 CLLLLEEVKKKNMHESAERIEHIMK 499

BLAST of Sed0028237 vs. TAIR 10
Match: AT3G04130.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-45
Identity = 90/145 (62.07%), Postives = 107/145 (73.79%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           MP   V  NTSTYNSMI+MYCH  +E KA+ELL+EME S +C PDV TY  LL+SCF+  
Sbjct: 356 MPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRG 415

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
           +   V  KLL +M+ KHHLSLD  TY+ LI  LCRAN CEWAY LF +MI QDI PR+ T
Sbjct: 416 DVVEV-GKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRT 475

Query: 121 CQLLLDEVKQKNMDEFADRIEDVMK 146
           C LLL+EVK+KNM E A+RIE +MK
Sbjct: 476 CLLLLEEVKKKNMHESAERIEHIMK 499

BLAST of Sed0028237 vs. TAIR 10
Match: AT3G22670.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 53/147 (36.05%), Postives = 87/147 (59.18%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEM--EKSGICEPDVQTYYSLLKSCFR 60
           M ++ V  +   YN+MIS   H  ++  A+ LL+ M  E+   C P+V+TY  LLK C  
Sbjct: 404 MTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCH 463

Query: 61  TENTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRY 120
            +    +L  LL  M+ K+ +S+D+ TY LLI GLC + K E A   F + + + + PR 
Sbjct: 464 KKKM-KLLGILLHHMV-KNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRD 523

Query: 121 ITCQLLLDEVKQKNMDEFADRIEDVMK 146
            TC++L+DE+++KNM E   +I+ +++
Sbjct: 524 STCKMLVDELEKKNMAEAKLKIQSLVQ 548

BLAST of Sed0028237 vs. TAIR 10
Match: AT3G22470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-14
Identity = 44/144 (30.56%), Postives = 78/144 (54.17%), Query Frame = 0

Query: 3   SKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTENT 62
           SK ++PNT TYN+++  +C  G+ + A EL +EM   G+  P V TY  LL         
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV-PPSVVTYGILLDGLCDNGEL 472

Query: 63  DNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYITCQ 122
           +  L   + + + K  ++L I  Y+++IHG+C A+K + A+ LF  +  + +KP  +T  
Sbjct: 473 NKALE--IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 532

Query: 123 LLLDEVKQKNMDEFADRIEDVMKK 147
           +++  + +K     AD +   MK+
Sbjct: 533 VMIGGLCKKGSLSEADMLFRKMKE 553

BLAST of Sed0028237 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-13
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 0

Query: 1   MPSKSVLPNTSTYNSMISMYCHRGQEHKAMELLEEMEKSGICEPDVQTYYSLLKSCFRTE 60
           + SK +LP+  T+NS+I   C       AMEL EEM   G CEPD  TY  L+ S     
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG-CEPDEFTYNMLIDSLCSKG 450

Query: 61  NTDNVLRKLLDDMINKHHLSLDICTYSLLIHGLCRANKCEWAYQLFVKMIGQDIKPRYIT 120
             D  L  L    +     +  + TY+ LI G C+ANK   A ++F +M    +    +T
Sbjct: 451 KLDEALNML--KQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 510

Query: 121 CQLLLDEVKQKNMDEFADRIEDVM 145
              L+D + +    E A ++ D M
Sbjct: 511 YNTLIDGLCKSRRVEDAAQLMDQM 531

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022966771.13.5e-6887.07pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like [Cucur... [more]
XP_023541614.12.9e-6786.39pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like [Cucur... [more]
XP_022944939.13.8e-6787.07pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Cucurbita ... [more]
KAG7012750.16.6e-6786.39Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG6573665.16.6e-6786.39Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
Match NameE-valueIdentityDescription
Q9M8W92.8e-4462.07Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidop... [more]
Q9LUJ42.9e-1736.05Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidop... [more]
Q6NQ833.3e-1330.56Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop... [more]
Q9LFF18.2e-1232.64Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
P0C7Q71.1e-1128.08Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS... [more]
Match NameE-valueIdentityDescription
A0A6J1HQ841.7e-6887.07pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like OS=Cuc... [more]
A0A6J1FZG91.9e-6787.07pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Cucurbit... [more]
A0A6J1DD082.5e-6481.63pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like OS=Mom... [more]
A0A1S3BE824.0e-6281.63pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Cucumis ... [more]
A0A5A7SWG74.0e-6281.63Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT3G04130.12.0e-4562.07Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G04130.22.0e-4562.07Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G22670.12.1e-1836.05Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G22470.12.4e-1430.56Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G53700.15.8e-1332.64Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 79..109
e-value: 8.5E-10
score: 38.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 12..45
e-value: 2.3E-10
score: 38.0
coord: 84..116
e-value: 5.1E-7
score: 27.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..57
e-value: 1.5E-15
score: 57.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 82..116
score: 11.158661
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 12.75901
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..147
e-value: 1.2E-32
score: 115.6
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 1..147
NoneNo IPR availablePANTHERPTHR47933:SF8OS02G0601600 PROTEINcoord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0028237.1Sed0028237.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding