Sed0028187 (gene) Chayote v1

Overview


Name	Sed0028187
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Cyclin-dependent protein kinase inhibitor SMR13
Location	LG08: 19980749 .. 19981150 (-)
RNA-Seq Expression	Sed0028187
Synteny	Sed0028187

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTAAAGGAGGAAGAACAAAAAGAAAAAGAAAGCCAACAACAACAACAACAACAACAACCCAATTGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGATCAACAACAACAATCAAGGTAGAAGGCTTCAAAATATCAGAACTAAAATAACAGAGGAAATTCAAGCTTCAAGCTCCTCTGCCATGGCTGTCACTGAATCATCATCAGCTTCACCAAGCTCTGATTTTGAAGAGTGCTGGTGTACTCCTAAAGCAGATAGATTTCAAATCCCAAAGCTCAAAATTTGCCCTCCAGCTCCTATAAAACAAAGGCTCTTTCCAAATTGTTCTTTACAAAGATCTTCTCCAATTGCTCTCTTTGCTTCACCAGACATCGACCTTTTCTTCTTCTCACAATGA

mRNA sequence

ATGGCTTCTAAAGGAGGAAGAACAAAAAGAAAAAGAAAGCCAACAACAACAACAACAACAACAACCCAATTGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGATCAACAACAACAATCAAGGTAGAAGGCTTCAAAATATCAGAACTAAAATAACAGAGGAAATTCAAGCTTCAAGCTCCTCTGCCATGGCTGTCACTGAATCATCATCAGCTTCACCAAGCTCTGATTTTGAAGAGTGCTGGTGTACTCCTAAAGCAGATAGATTTCAAATCCCAAAGCTCAAAATTTGCCCTCCAGCTCCTATAAAACAAAGGCTCTTTCCAAATTGTTCTTTACAAAGATCTTCTCCAATTGCTCTCTTTGCTTCACCAGACATCGACCTTTTCTTCTTCTCACAATGA

Coding sequence (CDS)

ATGGCTTCTAAAGGAGGAAGAACAAAAAGAAAAAGAAAGCCAACAACAACAACAACAACAACAACCCAATTGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGATCAACAACAACAATCAAGGTAGAAGGCTTCAAAATATCAGAACTAAAATAACAGAGGAAATTCAAGCTTCAAGCTCCTCTGCCATGGCTGTCACTGAATCATCATCAGCTTCACCAAGCTCTGATTTTGAAGAGTGCTGGTGTACTCCTAAAGCAGATAGATTTCAAATCCCAAAGCTCAAAATTTGCCCTCCAGCTCCTATAAAACAAAGGCTCTTTCCAAATTGTTCTTTACAAAGATCTTCTCCAATTGCTCTCTTTGCTTCACCAGACATCGACCTTTTCTTCTTCTCACAATGA

Protein sequence

MASKGGRTKRKRKPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQASSSSAMAVTESSSASPSSDFEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCSLQRSSPIALFASPDIDLFFFSQ

Homology

[Close]

BLAST of Sed0028187 vs. NCBI nr
Match: KAG7022087.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 78/137 (56.93%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 1   MASKGGRTKRKRKPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQN---IRTKITEEIQ- 60
           MASKGGRT+R   PT           KK KKK+K + NN GRR +    + +KI EEI+ 
Sbjct: 1   MASKGGRTRRGTNPTPPL--------KKTKKKLKNSTNNGGRRRRRRIIMSSKIREEIEE 60

Query: 61  --ASSSSAMAVTESSSASPSSDFEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCSLQR 120
             ASSSSAMA  +  ++  SSDFE C  TPKADRF+IP+++ICPPAP KQR   NCSLQ+
Sbjct: 61  AAASSSSAMAAIDEQAS--SSDFEHC-STPKADRFKIPEIQICPPAPKKQRPISNCSLQK 120

Query: 121 SSPIALFASPDIDLFFF 132
            SPIA FASPDI+LFFF
Sbjct: 121 HSPIAFFASPDIELFFF 126

[Close]

BLAST of Sed0028187 vs. NCBI nr
Match: XP_023530358.1 (cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita pepo subsp. pepo] >KAG6588189.1 Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-21
Identity = 79/136 (58.09%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 1   MASKGGRTKRKRKPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQNI--RTKITEEIQ-- 60
           MASKGGRT+R   P      T  LKK KKK K   NN  + RR + I   +KI EEI+  
Sbjct: 1   MASKGGRTRRGTNP------TPPLKKTKKKLKNSTNNGGRRRRRRRIIMSSKIREEIEEA 60

Query: 61  -ASSSSAMAVTESSSASPSSDFEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCSLQRS 120
            ASSSSAMA  +  ++  SSDFE C  TPKADRF+IP+++ICPPAP KQR   NCSLQ+ 
Sbjct: 61  AASSSSAMAAIDEQAS--SSDFEHC-STPKADRFKIPEIQICPPAPKKQRPISNCSLQKH 120

Query: 121 SPIALFASPDIDLFFF 132
           SPIA FASPDI+LFFF
Sbjct: 121 SPIAFFASPDIELFFF 127

[Close]

BLAST of Sed0028187 vs. NCBI nr
Match: KAG6590203.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023854.1 Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-21
Identity = 77/133 (57.89%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 1   MASKGGRTKRKRKPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQASSS 60
           MASKGG  + K K     T  TQLKK +K KKMK    +Q +R+  + TK TEEI+ SSS
Sbjct: 1   MASKGGGRRNKGK----KTAKTQLKKNQKIKKMK----DQSKRI--VSTKRTEEIEVSSS 60

Query: 61  SAMAVTES--SSASPSSDFEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCSLQRSSPI 120
            AMA   +   SAS SSDFEEC  TPKA+RF+IP++KICPPAP KQR+  NCS Q+ SPI
Sbjct: 61  IAMAAMAAMEESASSSSDFEEC-STPKAERFRIPEIKICPPAPKKQRITSNCSSQKPSPI 120

Query: 121 ALFASPDIDLFFF 132
           + FASPDI++FFF
Sbjct: 121 SFFASPDIEMFFF 122

[Close]

BLAST of Sed0028187 vs. NCBI nr
Match: KGN66487.1 (hypothetical protein Csa_006949 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 73/143 (51.05%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 1   MASKGGRTKRKRKPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQASSS 60
           MASK G  +R+ +     TTTTQLK KK KK +K N         NI+ +  EEI+  +S
Sbjct: 1   MASKRGEARRRAR----KTTTTQLKNKKIKKNIKNN---------NIKLE-EEEIEKGTS 60

Query: 61  SAMAVT--ESSSASPSSDF------EECWCTPKADRFQIPKLKICPPAPIKQRLF----P 120
           S+  +   E S +  S DF      EEC  TPKA+RF+IP++KICPPAP K+RLF     
Sbjct: 61  SSTTINFEEKSVSRRSCDFEEEEEEEECCSTPKAERFKIPEIKICPPAPKKRRLFSNSNS 120

Query: 121 NCSLQRSSPIALFASPDIDLFFF 132
           NCSLQR SPIA FASPDI+LFFF
Sbjct: 121 NCSLQRPSPIAFFASPDIELFFF 129

[Close]

BLAST of Sed0028187 vs. NCBI nr
Match: XP_022154348.1 (cyclin-dependent protein kinase inhibitor SMR9-like [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-16
Identity = 70/133 (52.63%), Postives = 87/133 (65.41%), Query Frame = 0


Query: 1   MASKGGRTKRKRKPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQ-ASS 60
           MASKGG  + K K       + ++KKK  ++  K N        +N  T+    ++ ASS
Sbjct: 1   MASKGGIARTKMK------MSKKIKKKSPQRMKKRNPPPPSPPPKNQETETETAVELASS 60

Query: 61  SSAMAVTESSSASPSSDFEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCS-LQRSSPI 120
           S+AMA  ES     SSD EEC CTPKA+RF+IP++KICPPAP KQR+F NCS LQR SPI
Sbjct: 61  SAAMAENESM----SSDLEEC-CTPKAERFRIPEIKICPPAPKKQRIFSNCSNLQRPSPI 120

Query: 121 ALFASPDIDLFFF 132
           A FASPDI+LFFF
Sbjct: 121 AFFASPDIELFFF 122

[Close]

BLAST of Sed0028187 vs. ExPASy Swiss-Prot
Match: Q3ECS5 (Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 GN=SMR9 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-06
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 1   MASKGGRTKRKRKPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQASSS 60
           MASKG      +KP   TTT       +++K+    N +           I  ++ ++SS
Sbjct: 1   MASKG------KKPLRRTTT-------RRRKRSHFKNPSP-------PCSINSDVTSTSS 60

Query: 61  SAMAVTESSSASPSSDFEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCSLQRSSPIAL 120
           ++ + T +++ SP S    C CTP+  R  IP++  CPPAP KQ++  NC+L+R   IA 
Sbjct: 61  TSTSPTSTATPSPVSAESGC-CTPEKSR--IPEMLTCPPAPKKQKVAQNCALRRRQ-IAF 106

Query: 121 FASPDIDLFF 131
           FA PD++LFF
Sbjct: 121 FAPPDVELFF 106

[Close]

BLAST of Sed0028187 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 30  KKKMKINNNNQGRRLQNIRTKITEEIQASSSSAMAVTESSSASPSSDFEECWCTPKADRF 89
           KK  K N   +       + ++ +    ++++  +V   S A+  +    C CTPKA + 
Sbjct: 4   KKARKPNRAEKKLTRSCFKKQVPQHNNINTNTIYSVPSPSPAAVLTSPGGC-CTPKAKKS 63

Query: 90  QIPKLKICPPAPIKQRLFPNCSLQRSSPIALFASPDIDLFF 131
           +IP++  CPPAP KQR+  NC L+R   I  FA P+I+LFF
Sbjct: 64  RIPEMLTCPPAPKKQRVSKNCVLRRRQ-IVFFAPPEIELFF 102

[Close]

BLAST of Sed0028187 vs. ExPASy TrEMBL
Match: A0A0A0M041 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613590 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.1e-17
Identity = 73/143 (51.05%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 1   MASKGGRTKRKRKPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQASSS 60
           MASK G  +R+ +     TTTTQLK KK KK +K N         NI+ +  EEI+  +S
Sbjct: 1   MASKRGEARRRAR----KTTTTQLKNKKIKKNIKNN---------NIKLE-EEEIEKGTS 60

Query: 61  SAMAVT--ESSSASPSSDF------EECWCTPKADRFQIPKLKICPPAPIKQRLF----P 120
           S+  +   E S +  S DF      EEC  TPKA+RF+IP++KICPPAP K+RLF     
Sbjct: 61  SSTTINFEEKSVSRRSCDFEEEEEEEECCSTPKAERFKIPEIKICPPAPKKRRLFSNSNS 120

Query: 121 NCSLQRSSPIALFASPDIDLFFF 132
           NCSLQR SPIA FASPDI+LFFF
Sbjct: 121 NCSLQRPSPIAFFASPDIELFFF 129

[Close]

BLAST of Sed0028187 vs. ExPASy TrEMBL
Match: A0A6J1DK32 (cyclin-dependent protein kinase inhibitor SMR9-like OS=Momordica charantia OX=3673 GN=LOC111021634 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 70/133 (52.63%), Postives = 87/133 (65.41%), Query Frame = 0


Query: 1   MASKGGRTKRKRKPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQ-ASS 60
           MASKGG  + K K       + ++KKK  ++  K N        +N  T+    ++ ASS
Sbjct: 1   MASKGGIARTKMK------MSKKIKKKSPQRMKKRNPPPPSPPPKNQETETETAVELASS 60

Query: 61  SSAMAVTESSSASPSSDFEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCS-LQRSSPI 120
           S+AMA  ES     SSD EEC CTPKA+RF+IP++KICPPAP KQR+F NCS LQR SPI
Sbjct: 61  SAAMAENESM----SSDLEEC-CTPKAERFRIPEIKICPPAPKKQRIFSNCSNLQRPSPI 120

Query: 121 ALFASPDIDLFFF 132
           A FASPDI+LFFF
Sbjct: 121 AFFASPDIELFFF 122

[Close]

BLAST of Sed0028187 vs. ExPASy TrEMBL
Match: A0A200QIA8 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1173g3 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08
Identity = 47/116 (40.52%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 17  TTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQASSSSAMAVTESSSASPSSD 76
           TTTTTT           K+ NN    + ++I   I  +I A++                 
Sbjct: 8   TTTTTTSFS--------KMQNNIDIEQEKSIDIDIDIDINANNG---------------- 67

Query: 77  FEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCSLQRSSPIALFASPDIDLFFFS 133
               +CTPKA RFQIPK++ CPPAP KQRL   CS    +PI  FASPDI+LFF+S
Sbjct: 68  ----YCTPKAQRFQIPKIESCPPAPKKQRLVSYCSSSSRAPIPFFASPDIELFFYS 95

[Close]

BLAST of Sed0028187 vs. ExPASy TrEMBL
Match: K7MYD2 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G141300 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 13  KPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQASSSSA----MAVTES 72
           K  +T+TT T++K +K K+           + Q   T+  E    SSSS+    +   E 
Sbjct: 26  KMASTSTTRTRIKWQKLKE----------TKQQTSMTRPCEHATPSSSSSKEQGIKYVEE 85

Query: 73  SSASPSSDFEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCSLQRSSPIALFASPDIDL 132
            S +          TPKA RF+IP+++ CPPAP K+R+ PNCS +R SPIA FASPDI+L
Sbjct: 86  ESINEEDVCSSGCATPKAKRFRIPEVQTCPPAPKKRRVVPNCSSKR-SPIAFFASPDIEL 138

[Close]

BLAST of Sed0028187 vs. ExPASy TrEMBL
Match: A0A445FGG2 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Glycine soja OX=3848 GN=D0Y65_051449 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 16  TTTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQASSSSA----MAVTESSSA 75
           +T+TT T++K +K K+           + Q   T+  E    SSSS+    +   E  S 
Sbjct: 3   STSTTRTRIKWQKLKE----------TKQQTSMTRPCEHATPSSSSSKEQGIKYVEEESI 62

Query: 76  SPSSDFEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCSLQRSSPIALFASPDIDLFFF 133
           +          TPKA RF+IP+++ CPPAP K+R+ PNCS +R SPIA FASPDI+LFFF
Sbjct: 63  NEEDVCSSGCATPKAKRFRIPEVQTCPPAPKKRRVVPNCSSKR-SPIAFFASPDIELFFF 112

[Close]

BLAST of Sed0028187 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-07
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 1   MASKGGRTKRKRKPTTTTTTTTQLKKKKKKKKMKINNNNQGRRLQNIRTKITEEIQASSS 60
           MASKG      +KP   TTT       +++K+    N +           I  ++ ++SS
Sbjct: 1   MASKG------KKPLRRTTT-------RRRKRSHFKNPSP-------PCSINSDVTSTSS 60

Query: 61  SAMAVTESSSASPSSDFEECWCTPKADRFQIPKLKICPPAPIKQRLFPNCSLQRSSPIAL 120
           ++ + T +++ SP S    C CTP+  R  IP++  CPPAP KQ++  NC+L+R   IA 
Sbjct: 61  TSTSPTSTATPSPVSAESGC-CTPEKSR--IPEMLTCPPAPKKQKVAQNCALRRRQ-IAF 106

Query: 121 FASPDIDLFF 131
           FA PD++LFF
Sbjct: 121 FAPPDVELFF 106

[Close]

BLAST of Sed0028187 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 30  KKKMKINNNNQGRRLQNIRTKITEEIQASSSSAMAVTESSSASPSSDFEECWCTPKADRF 89
           KK  K N   +       + ++ +    ++++  +V   S A+  +    C CTPKA + 
Sbjct: 4   KKARKPNRAEKKLTRSCFKKQVPQHNNINTNTIYSVPSPSPAAVLTSPGGC-CTPKAKKS 63

Query: 90  QIPKLKICPPAPIKQRLFPNCSLQRSSPIALFASPDIDLFF 131
           +IP++  CPPAP KQR+  NC L+R   I  FA P+I+LFF
Sbjct: 64  RIPEMLTCPPAPKKQRVSKNCVLRRRQ-IVFFAPPEIELFF 102

The following BLAST results are available for this feature:

BLAST of Sed0028187 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022087.1	1.3e-21	56.93	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
XP_023530358.1	1.7e-21	58.09	cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita pepo subsp. pepo]...	[more]
KAG6590203.1	3.8e-21	57.89	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
KGN66487.1	1.3e-16	51.05	hypothetical protein Csa_006949 [Cucumis sativus]	[more]
XP_022154348.1	3.7e-16	52.63	cyclin-dependent protein kinase inhibitor SMR9-like [Momordica charantia]	[more]

BLAST of Sed0028187 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ECS5	2.7e-06	35.38	Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 G...	[more]
F4IWB3	3.0e-05	34.65	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Sed0028187 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M041	6.1e-17	51.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613590 PE=4 SV=1	[more]
A0A6J1DK32	1.8e-16	52.63	cyclin-dependent protein kinase inhibitor SMR9-like OS=Momordica charantia OX=36...	[more]
A0A200QIA8	1.8e-08	40.52	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1173g3 PE=4 SV=1	[more]
K7MYD2	3.0e-08	41.94	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G141300 PE=4 SV=1	[more]
A0A445FGG2	3.0e-08	42.15	Cyclin-dependent protein kinase inhibitor SMR13 OS=Glycine soja OX=3848 GN=D0Y65...	[more]

BLAST of Sed0028187 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51355.1	1.9e-07	35.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G20898.1	2.1e-06	34.65	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..77
None	No IPR available	PANTHER	PTHR33142:SF75	SUBFAMILY NOT NAMED	coord: 18..131
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 18..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028187.1	Sed0028187.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication