Sed0028168 (gene) Chayote v1

Overview


Name	Sed0028168
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG10: 36353749 .. 36356782 (+)
RNA-Seq Expression	Sed0028168
Synteny	Sed0028168

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACATAACCTATTGAGATTTCCATTCTCCTCGTCTTCTTTCCATCTGTCTCGTAGCGCAAGTAGCCAAGCAATTCCTCTTCCATTTCTGCAACTTCCATCCACATTTCTTTGAAATTTCATCTCGATTTTTGCTTGTTTTCATCTCCTTTATTGCGAATCCGCCTTCAATTTCAGATTCTACGCAAAATTTGAGTCCAAGAACCATTGGAGTGGCTGAGTTTGTGCATGACGAGCGCTTCGGAGCTGTTTCATAATCGGAGGTATAGGTTGGGTCGCTCAGACGTGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGGAATCTTCAGTATCAACGCCGTCATCATGCTCACAACGCCAATCACCGCCGCGATTTCACCGCCTGTGGCGCTTTCCGACGGTCTTCGCTCCACGAACGCCGACAATCGCCCCGGTTCTCGAACCCTGTGGTAAGGACAATCAATTTTATCAATTTTTACTTAATTCTTGGTTTGTGTTTCTTTATCGGCTGCTGTTATGAATTCGGACCAAGAATCAAGATAAATCAGAAAGAAAATGTAAGAAAAAATAAGATGATTTAGTTAGTTCATGAACATTTTGTTAGCTACGTCCACGAGTAGAGAGAACGGTTTTATTAATCTTGTAAATACAGCATATAGAATGTAGATGCTAGGGTTTTATGCACTTTCATAAAAACCTATTACGAATTATAGTCCAAATACGGAAATATAAACCCAACTATATATTTCGGCTAGATTTCTGGGGGTTTGTCCCTAAGCTCCCACTGGGGTGTCGCCCCTGGACCTCGATTTGCTGACTGGACAGCGAGATTCTCGTTCACTGACCGGGCAGTGCGACCCCGACTAAGTATTCGTGGGAGATCATAGTTCAAGACATATCTCAATACTTGGGAAAATATTTTGACTTGATGAATTCTGGATTTATTCGCTGATAGTATTTGGAGTTTAGTTGGAAGAATTGTTCAGCGGTGGAGTTATGTGTTTGTTTTTGATCTAGCGGTTCTTCTAAACTGTATAATCAGTTGGGCATATGTTGAAAAGATGAATTATGACCTAATTTATCAGCTTGAGTTGTTGGGATGGTTTAATTCGGTATCCATGTGTTCATTGCCTGAGAAATAGAATAGTGTTTCTTCACCCAGTTGTTAATTCAGTGATTATTTTCATTCTTCAGTGCTAATTCTATTGCTGTGAAATCCTTAGAACCAGAATAAATCAGGTGGTAGAACTTGGTAATTTGAAGTTTTGATGACTAAAACTTCCCAATTTGATGAGCTTTTAAATGCTACTTTGTAATGTAAACGTGATTTAATTGTTGTGTGATCAACGATCATAGAGACATGGGATGCTTTTGTAATTTTCGGGTTTGTTATCTTGGTGTGAATTTTGAATTCAAGTGGTTTGAGGAATATTAACACTATATCTTCTTGTAGCTTGCTGTAGATCGATCACTTGCTCAGTCTGACTCGGGTATGAGCATTGGTTCTAGAAATAATATCAATGTAAATATTCAGAGTAGTTTGAGGACTGGGTTAAATGGGGATTCCAGATTGCCAGGATCTGTTTTACTTGCTAGAGAAAGACTTCTCGAGAGATTGAGAGGCGCCTCTTCCCCGACGAGCAGGTCAGCTGATATTCTATTATCATGTGCTTGTTGTTTACATTACCATACCGAAAAATTTGGGAATCCAATAGGAAATAGTCCTTGTTATCTCTCTTAGAGACATAATCTTTTAGCTATTGATGATGCTTTTTCTTTTTAGATCTGTGACCGTCTAAGCCAGCTTACATGGTTCTCAACTAATGTCACGAGATATAACCTTAATACATTTTTATGTGAAGGAAACATATAGGAATTTAAATCCTATTTAGTTAATCATCATGGATTGAGAACCCATCACCTCTTAACTCTCCAAGACCTTCTTGACCACTAGGCTACTTCATGATAGTAGCTATTGGCAATGCATCATTGATGTCTTGTGGCATCAACCTCCACCTACTCAGGAATTAATTTATTACGAGTTTTTTGGACATCTAAATATTGTATGGTCAGACGGTATGTCCCATGATAATGGTCGAGGTGGCACAAGTTAGCTCAGACTGTGACATATATAGAAAAAAAATATATAGATTCATACTGTGGTATGAGTATTTTTCGTATACTGAAAATAAATCAAATCCGAGTGATCCAGTTCCATTATAAATATACTATCCTAGACTTTAACAAAATTGTATATATATATATGGATAGCATATCAAACTCTACTACTGGTTGACCATCTATGTGTTGAAAACCGGAATGGATCCCTGCTATATGCAAACTGAACTTGTTCATTTATCAGGAATGGTTTTTTTGAATCATTGGATTGGAGTCCAGAAATCCCGACAAGTCGATCACAGACGATAACCCCTGTTGATGCTGACAGGTTGCGATGGCTTCCTGCACCCAGCAAGAGGCCCCCTGGACTCTCACAGGACGCAATCAACCGCTTACAAATCGAGATTTTTATAAATATAGAGTATATCATTGATGATGACCTGACGACGACGACAACAACAGCATCAAGTGATTGTAGTATATGTCTAGAGAGCTTCGCAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTGGAACAATGGGTTCGAATTTGTGGAGAATGTCCGTATTGTCGACGACATATCGTTAACTGATCGTTGACTTAACACGATTCGCAACTTGGGATTTCCTGTAGATTGAAGAAAACCATTCCAAGTTGTGGTATTGATCTTTATAGTTATAGTTGATGCTGATACTTGTATGTTGGATTGTATCCTTCTAAGTTCTGTGTTGGGAGCAACTTGTGTGGCAATTTCAATAGCCAATAAAGTGTATAGGATGGATGCTATATAGTAGAATGTTACCATGGATTTGACTGCTTTGTAACTTCTTTTTCTTGGTTTTTGTTGAGAAATGGAACATGGTTAAATGTTCATTTGGTAAAGTTGAGAC

mRNA sequence

GGAACATAACCTATTGAGATTTCCATTCTCCTCGTCTTCTTTCCATCTGTCTCGTAGCGCAAGTAGCCAAGCAATTCCTCTTCCATTTCTGCAACTTCCATCCACATTTCTTTGAAATTTCATCTCGATTTTTGCTTGTTTTCATCTCCTTTATTGCGAATCCGCCTTCAATTTCAGATTCTACGCAAAATTTGAGTCCAAGAACCATTGGAGTGGCTGAGTTTGTGCATGACGAGCGCTTCGGAGCTGTTTCATAATCGGAGGTATAGGTTGGGTCGCTCAGACGTGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGGAATCTTCAGTATCAACGCCGTCATCATGCTCACAACGCCAATCACCGCCGCGATTTCACCGCCTGTGGCGCTTTCCGACGGTCTTCGCTCCACGAACGCCGACAATCGCCCCGGTTCTCGAACCCTGTGCTTGCTGTAGATCGATCACTTGCTCAGTCTGACTCGGGTATGAGCATTGGTTCTAGAAATAATATCAATGTAAATATTCAGAGTAGTTTGAGGACTGGGTTAAATGGGGATTCCAGATTGCCAGGATCTGTTTTACTTGCTAGAGAAAGACTTCTCGAGAGATTGAGAGGCGCCTCTTCCCCGACGAGCAGGAATGGTTTTTTTGAATCATTGGATTGGAGTCCAGAAATCCCGACAAGTCGATCACAGACGATAACCCCTGTTGATGCTGACAGGTTGCGATGGCTTCCTGCACCCAGCAAGAGGCCCCCTGGACTCTCACAGGACGCAATCAACCGCTTACAAATCGAGATTTTTATAAATATAGAGTATATCATTGATGATGACCTGACGACGACGACAACAACAGCATCAAGTGATTGTAGTATATGTCTAGAGAGCTTCGCAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTGGAACAATGGGTTCGAATTTGTGGAGAATGTCCGTATTGTCGACGACATATCGTTAACTGATCGTTGACTTAACACGATTCGCAACTTGGGATTTCCTGTAGATTGAAGAAAACCATTCCAAGTTGTGGTATTGATCTTTATAGTTATAGTTGATGCTGATACTTGTATGTTGGATTGTATCCTTCTAAGTTCTGTGTTGGGAGCAACTTGTGTGGCAATTTCAATAGCCAATAAAGTGTATAGGATGGATGCTATATAGTAGAATGTTACCATGGATTTGACTGCTTTGTAACTTCTTTTTCTTGGTTTTTGTTGAGAAATGGAACATGGTTAAATGTTCATTTGGTAAAGTTGAGAC

Coding sequence (CDS)

ATGACGAGCGCTTCGGAGCTGTTTCATAATCGGAGGTATAGGTTGGGTCGCTCAGACGTGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGGAATCTTCAGTATCAACGCCGTCATCATGCTCACAACGCCAATCACCGCCGCGATTTCACCGCCTGTGGCGCTTTCCGACGGTCTTCGCTCCACGAACGCCGACAATCGCCCCGGTTCTCGAACCCTGTGCTTGCTGTAGATCGATCACTTGCTCAGTCTGACTCGGGTATGAGCATTGGTTCTAGAAATAATATCAATGTAAATATTCAGAGTAGTTTGAGGACTGGGTTAAATGGGGATTCCAGATTGCCAGGATCTGTTTTACTTGCTAGAGAAAGACTTCTCGAGAGATTGAGAGGCGCCTCTTCCCCGACGAGCAGGAATGGTTTTTTTGAATCATTGGATTGGAGTCCAGAAATCCCGACAAGTCGATCACAGACGATAACCCCTGTTGATGCTGACAGGTTGCGATGGCTTCCTGCACCCAGCAAGAGGCCCCCTGGACTCTCACAGGACGCAATCAACCGCTTACAAATCGAGATTTTTATAAATATAGAGTATATCATTGATGATGACCTGACGACGACGACAACAACAGCATCAAGTGATTGTAGTATATGTCTAGAGAGCTTCGCAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTGGAACAATGGGTTCGAATTTGTGGAGAATGTCCGTATTGTCGACGACATATCGTTAACTGA

Protein sequence

MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSSLHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLLARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGLSQDAINRLQIEIFINIEYIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHACLEQWVRICGECPYCRRHIVN

Homology

[Close]

BLAST of Sed0028168 vs. NCBI nr
Match: XP_022988901.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita maxima])

HSP 1 Score: 413.3 bits (1061), Expect = 1.6e-111
Identity = 207/260 (79.62%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSS 60
           MTSASELFH+RRYRLGR+D DLGLDSEPPDR+LQYQRRHH HN NHRR   ACGAFRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLL 120
           L ER QSPRF NP LAVDRS AQS+SG+S+GSRNNIN NIQ+SLR GL+GDSRLPGSVLL
Sbjct: 61  LQERHQSPRFLNP-LAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLL 120

Query: 121 ARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGL 180
           ARERL ERLRGASSPT RNG  E+LDWSPEI  SRSQ I+  DADRLR +PA SKRPPGL
Sbjct: 121 ARERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGL 180

Query: 181 SQDAINRLQIEIFINIEYIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHA 240
           S +AIN LQ+E FI+IE+IIDDDLT TTT  S+DCSICL+SF DGDKLIHLPC+HKFHHA
Sbjct: 181 SLEAINCLQLERFIDIEHIIDDDLTMTTT--SNDCSICLDSFIDGDKLIHLPCKHKFHHA 240

Query: 241 CLEQWVRICGECPYCRRHIV 261
           CLE W+R CGECPYCR+HIV
Sbjct: 241 CLEPWIRTCGECPYCRQHIV 257

[Close]

BLAST of Sed0028168 vs. NCBI nr
Match: XP_023529438.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412.5 bits (1059), Expect = 2.6e-111
Identity = 207/260 (79.62%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSS 60
           MTSASELFH+RRYRLGR+D DLGLDSEPPDR+LQYQRRHH HN NHRR   ACGAFRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLL 120
           L ERRQSPRF NP LAVDRS AQS+SG+S+GSRNNIN NIQ+SLR GL+GDSRLPGSVLL
Sbjct: 61  LQERRQSPRFLNP-LAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLL 120

Query: 121 ARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGL 180
           ARERL ERLRGASSPT RNG  E+LDWSPEI  SRSQ I+  DADRLR +PA SKRPPGL
Sbjct: 121 ARERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGL 180

Query: 181 SQDAINRLQIEIFINIEYIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHA 240
           SQ+AIN LQ+E FI+IE+IIDDDLT   T  S+DCSICL+SF DGDKLIHLPC+HKFHHA
Sbjct: 181 SQEAINCLQLERFIDIEHIIDDDLTMIRT--SNDCSICLDSFIDGDKLIHLPCKHKFHHA 240

Query: 241 CLEQWVRICGECPYCRRHIV 261
           CLEQW+R CGECPYCR+ IV
Sbjct: 241 CLEQWIRTCGECPYCRQRIV 257

[Close]

BLAST of Sed0028168 vs. NCBI nr
Match: XP_038888994.1 (probable E3 ubiquitin-protein ligase RHY1A [Benincasa hispida])

HSP 1 Score: 411.4 bits (1056), Expect = 5.9e-111
Identity = 204/260 (78.46%), Postives = 229/260 (88.08%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSS 60
           MTSASELF++RRYRLGR+D DLGLDSEPPDR LQYQRRHH HNANHRRDF +CG FRRSS
Sbjct: 1   MTSASELFYSRRYRLGRTDADLGLDSEPPDRYLQYQRRHHGHNANHRRDFNSCGTFRRSS 60

Query: 61  LHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLL 120
           L ERRQSPRF NP L+VDR   QSDS  S GSRNNIN N Q+SLRTGL+GDSRLPGSVLL
Sbjct: 61  LQERRQSPRFFNP-LSVDRLPTQSDSVTSDGSRNNINPNTQNSLRTGLSGDSRLPGSVLL 120

Query: 121 ARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGL 180
           ARERLLERLRGASSP SRN   E+LD SPEI T+RSQ I+ VDADR++ +PAPSKRPPGL
Sbjct: 121 ARERLLERLRGASSPRSRNALVEALDGSPEISTNRSQRISLVDADRMQLVPAPSKRPPGL 180

Query: 181 SQDAINRLQIEIFINIEYIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHA 240
           SQDAI+RLQ+E+FIN E+IIDDD+TTTTT  S++CSICLESF DGD LIHLPCEHKFHHA
Sbjct: 181 SQDAIDRLQLEVFINTEHIIDDDVTTTTT--SNECSICLESFTDGDVLIHLPCEHKFHHA 240

Query: 241 CLEQWVRICGECPYCRRHIV 261
           CL++W+R CGECPYCR+H+V
Sbjct: 241 CLDRWIRTCGECPYCRQHVV 257

[Close]

BLAST of Sed0028168 vs. NCBI nr
Match: XP_022927900.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita moschata])

HSP 1 Score: 406.0 bits (1042), Expect = 2.5e-109
Identity = 206/261 (78.93%), Postives = 227/261 (86.97%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSS 60
           MTSASELFH+RRYRLGR+D DLGLDSEPPDR+LQYQRRHH HN NHRR   ACGAFRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLL 120
           L ERRQSPRF +P LAVDRS AQS+SG+S+GSRNNI+ NIQ+SLR GLNGDSRLPGSVLL
Sbjct: 61  LQERRQSPRFLDP-LAVDRSPAQSESGISVGSRNNISANIQNSLRPGLNGDSRLPGSVLL 120

Query: 121 ARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGL 180
           ARERL ERLRGASSPT RNG  E+LDWSPEI  SRSQ I+  DADRLR +PA SKRPPGL
Sbjct: 121 ARERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGL 180

Query: 181 SQDAINRLQIEIFINIE-YIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHH 240
           SQ+AIN LQ+E FI+IE +IIDDDLT   T  S+DCSICL+SF DGDKLIHLPC+HKFHH
Sbjct: 181 SQEAINCLQLERFIDIEQHIIDDDLTMIRT--SNDCSICLDSFIDGDKLIHLPCKHKFHH 240

Query: 241 ACLEQWVRICGECPYCRRHIV 261
           ACLEQW+R CGECPYCR+ IV
Sbjct: 241 ACLEQWIRTCGECPYCRQRIV 258

[Close]

BLAST of Sed0028168 vs. NCBI nr
Match: KAG6588706.1 (putative E3 ubiquitin-protein ligase RHY1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 403.7 bits (1036), Expect = 1.2e-108
Identity = 205/261 (78.54%), Postives = 227/261 (86.97%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSS 60
           MTSASELFH+RRYRLGR+D DLGLDSEPPDR+LQ+QRRHH HN NHRR   ACGAFRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQFQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLL 120
           L ERRQSPRF +P LAVDRS AQS+SG+S+GSRNNIN NIQ+SLR GL+GDSRLPGSVLL
Sbjct: 61  LQERRQSPRFLDP-LAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLL 120

Query: 121 ARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGL 180
           ARERLLERLRGASSPT RNG  E+LDWSPEI  SRSQ I+  DADRLR +PA SKRPPGL
Sbjct: 121 ARERLLERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGL 180

Query: 181 SQDAINRLQIEIFINIE-YIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHH 240
           SQ+AIN LQ+E FI+IE +IIDDD T   T  S+DCSICL+SF DGDKLIHLPC+HKFHH
Sbjct: 181 SQEAINCLQLERFIDIEQHIIDDDSTMIRT--SNDCSICLDSFIDGDKLIHLPCKHKFHH 240

Query: 241 ACLEQWVRICGECPYCRRHIV 261
           ACLEQW+R CGECPYCR+ IV
Sbjct: 241 ACLEQWIRTCGECPYCRQRIV 258

[Close]

BLAST of Sed0028168 vs. ExPASy Swiss-Prot
Match: Q852U6 (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.3e-38
Identity = 106/266 (39.85%), Postives = 133/266 (50.00%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLD-SEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRS 60
           MTSASELF  RR R GRSD  L  D S     +  + RRH  H+ N R D   C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVL 120
           +   RR    F +P+    R +          + ++ +   QSS    LNG  RLPG+VL
Sbjct: 61  TPRLRR---FFHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPA------P 180
           LAR+RL ERLRG S  ++      SLD        R  +   +D D +  L         
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLD------DQRESSFHSIDGDPIFQLAGLQVTYEC 180

Query: 181 SKRPPGLSQDAINRLQIEIFINIEYIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPC 240
           +K+P GL+QDAIN L  + F + E            +   DCSICLESF  GD LI LPC
Sbjct: 181 NKKPQGLTQDAINCLHRQTFSSAE----------VKSEMRDCSICLESFTKGDMLISLPC 240

Query: 241 EHKFHHACLEQWVRICGECPYCRRHI 260
            H FH +CL  W+R CG+CP CRR I
Sbjct: 241 THSFHSSCLNPWLRACGDCPCCRRAI 247

[Close]

BLAST of Sed0028168 vs. ExPASy Swiss-Prot
Match: Q9ULT6 (E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens OX=9606 GN=ZNRF3 PE=1 SV=3)

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-10
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 204 LTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHACLEQWVRICGECPYCRRHIV 261
           L T +++++SDC+ICLE + DG++L  +PC H+FH  C++ W+     CP+CR +I+
Sbjct: 282 LDTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338

[Close]

BLAST of Sed0028168 vs. ExPASy Swiss-Prot
Match: Q08D68 (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis OX=8364 GN=znrf3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.0e-10
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 204 LTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHACLEQWVRICGECPYCRRHIV 261
           L T +++++SDC+ICLE + DG++L  +PC H+FH  C++ W+     CP+CR +I+
Sbjct: 255 LDTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNII 311

[Close]

BLAST of Sed0028168 vs. ExPASy Swiss-Prot
Match: Q5SSZ7 (E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus OX=10090 GN=Znrf3 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-09
Identity = 24/57 (42.11%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 204 LTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHACLEQWVRICGECPYCRRHIV 261
           L T ++ ++SDC+ICLE + DG++L  +PC H+FH  C++ W+     CP+CR +I+
Sbjct: 279 LDTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 335

[Close]

BLAST of Sed0028168 vs. ExPASy Swiss-Prot
Match: Q4KLR8 (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis OX=8355 GN=znrf3 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 24/57 (42.11%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 204 LTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHACLEQWVRICGECPYCRRHIV 261
           L T ++++ SDC+ICLE + DG++L  +PC H+FH  C++ W+     CP+CR +I+
Sbjct: 191 LDTLSSSSISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNII 247

[Close]

BLAST of Sed0028168 vs. ExPASy TrEMBL
Match: A0A6J1JIJ3 (probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita maxima OX=3661 GN=LOC111486117 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 7.5e-112
Identity = 207/260 (79.62%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSS 60
           MTSASELFH+RRYRLGR+D DLGLDSEPPDR+LQYQRRHH HN NHRR   ACGAFRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLL 120
           L ER QSPRF NP LAVDRS AQS+SG+S+GSRNNIN NIQ+SLR GL+GDSRLPGSVLL
Sbjct: 61  LQERHQSPRFLNP-LAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLL 120

Query: 121 ARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGL 180
           ARERL ERLRGASSPT RNG  E+LDWSPEI  SRSQ I+  DADRLR +PA SKRPPGL
Sbjct: 121 ARERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGL 180

Query: 181 SQDAINRLQIEIFINIEYIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHA 240
           S +AIN LQ+E FI+IE+IIDDDLT TTT  S+DCSICL+SF DGDKLIHLPC+HKFHHA
Sbjct: 181 SLEAINCLQLERFIDIEHIIDDDLTMTTT--SNDCSICLDSFIDGDKLIHLPCKHKFHHA 240

Query: 241 CLEQWVRICGECPYCRRHIV 261
           CLE W+R CGECPYCR+HIV
Sbjct: 241 CLEPWIRTCGECPYCRQHIV 257

[Close]

BLAST of Sed0028168 vs. ExPASy TrEMBL
Match: A0A6J1EQ66 (probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita moschata OX=3662 GN=LOC111434663 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.2e-109
Identity = 206/261 (78.93%), Postives = 227/261 (86.97%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSS 60
           MTSASELFH+RRYRLGR+D DLGLDSEPPDR+LQYQRRHH HN NHRR   ACGAFRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLL 120
           L ERRQSPRF +P LAVDRS AQS+SG+S+GSRNNI+ NIQ+SLR GLNGDSRLPGSVLL
Sbjct: 61  LQERRQSPRFLDP-LAVDRSPAQSESGISVGSRNNISANIQNSLRPGLNGDSRLPGSVLL 120

Query: 121 ARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGL 180
           ARERL ERLRGASSPT RNG  E+LDWSPEI  SRSQ I+  DADRLR +PA SKRPPGL
Sbjct: 121 ARERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGL 180

Query: 181 SQDAINRLQIEIFINIE-YIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHH 240
           SQ+AIN LQ+E FI+IE +IIDDDLT   T  S+DCSICL+SF DGDKLIHLPC+HKFHH
Sbjct: 181 SQEAINCLQLERFIDIEQHIIDDDLTMIRT--SNDCSICLDSFIDGDKLIHLPCKHKFHH 240

Query: 241 ACLEQWVRICGECPYCRRHIV 261
           ACLEQW+R CGECPYCR+ IV
Sbjct: 241 ACLEQWIRTCGECPYCRQRIV 258

[Close]

BLAST of Sed0028168 vs. ExPASy TrEMBL
Match: A0A5A7SMR0 (E3 ubiquitin-protein ligase RLIM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001110 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 1.0e-108
Identity = 200/259 (77.22%), Postives = 224/259 (86.49%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSS 60
           MTSASELF+ RRYR GR+D DLGLDSEPPDRNLQYQRRHH HNANHRRD  +CG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLL 120
           L ERRQSPRF NP L+VDRS AQSDS  S+GSRNNIN N Q+SLR+GL+GDSRLPGSVLL
Sbjct: 61  LQERRQSPRFFNP-LSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLL 120

Query: 121 ARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGL 180
           ARERLLERLRGASSPTSRN   E+ + +PEI TSRSQ I+ +DADR+R +  PSKRPPGL
Sbjct: 121 ARERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGL 180

Query: 181 SQDAINRLQIEIFINIEYIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHA 240
           SQDAINRLQ+E+FIN + IIDDD+ T T+T   DCSICLESF DGDKLIHLPCEHKFHHA
Sbjct: 181 SQDAINRLQLEVFINTDRIIDDDVMTITST---DCSICLESFTDGDKLIHLPCEHKFHHA 240

Query: 241 CLEQWVRICGECPYCRRHI 260
           CL++W+R CGECPYCR+HI
Sbjct: 241 CLDRWIRTCGECPYCRQHI 255

[Close]

BLAST of Sed0028168 vs. ExPASy TrEMBL
Match: A0A1S3C156 (E3 ubiquitin-protein ligase RLIM OS=Cucumis melo OX=3656 GN=LOC103495299 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 1.0e-108
Identity = 200/259 (77.22%), Postives = 224/259 (86.49%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSS 60
           MTSASELF+ RRYR GR+D DLGLDSEPPDRNLQYQRRHH HNANHRRD  +CG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLL 120
           L ERRQSPRF NP L+VDRS AQSDS  S+GSRNNIN N Q+SLR+GL+GDSRLPGSVLL
Sbjct: 61  LQERRQSPRFFNP-LSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLL 120

Query: 121 ARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGL 180
           ARERLLERLRGASSPTSRN   E+ + +PEI TSRSQ I+ +DADR+R +  PSKRPPGL
Sbjct: 121 ARERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGL 180

Query: 181 SQDAINRLQIEIFINIEYIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHA 240
           SQDAINRLQ+E+FIN + IIDDD+ T T+T   DCSICLESF DGDKLIHLPCEHKFHHA
Sbjct: 181 SQDAINRLQLEVFINTDRIIDDDVMTITST---DCSICLESFTDGDKLIHLPCEHKFHHA 240

Query: 241 CLEQWVRICGECPYCRRHI 260
           CL++W+R CGECPYCR+HI
Sbjct: 241 CLDRWIRTCGECPYCRQHI 255

[Close]

BLAST of Sed0028168 vs. ExPASy TrEMBL
Match: A0A0A0K6D2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.2e-104
Identity = 193/259 (74.52%), Postives = 220/259 (84.94%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLDSEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRSS 60
           MTSASELF+ RRYR GR+D DLGLDSEPPDR+LQYQRRHH HN NHRRD  +CG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVLL 120
           L ERRQSPRF NP L+VDRS AQSDS  S+ SRNNIN N Q+SLR+GL+GDSRLPGSVLL
Sbjct: 61  LQERRQSPRFFNP-LSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLL 120

Query: 121 ARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPAPSKRPPGL 180
           ARERLLERLRGASSPT+RN   E+ + +PE  TSRSQ I+ VDADR+R +  PSKRPPGL
Sbjct: 121 ARERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGL 180

Query: 181 SQDAINRLQIEIFINIEYIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHA 240
           SQDAINRLQ+E+FIN ++II+D + T T+T   DCSICLESF DGDKLIHLPCEHKFHH 
Sbjct: 181 SQDAINRLQLEVFINTDHIINDGVMTITST---DCSICLESFTDGDKLIHLPCEHKFHHP 240

Query: 241 CLEQWVRICGECPYCRRHI 260
           CL++W+R CGECPYCR+HI
Sbjct: 241 CLDRWIRTCGECPYCRQHI 255

[Close]

BLAST of Sed0028168 vs. TAIR 10
Match: AT1G49850.1 (RING/U-box superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 3.8e-39
Identity = 106/266 (39.85%), Postives = 133/266 (50.00%), Query Frame = 0


Query: 1   MTSASELFHNRRYRLGRSDVDLGLD-SEPPDRNLQYQRRHHAHNANHRRDFTACGAFRRS 60
           MTSASELF  RR R GRSD  L  D S     +  + RRH  H+ N R D   C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLHERRQSPRFSNPVLAVDRSLAQSDSGMSIGSRNNINVNIQSSLRTGLNGDSRLPGSVL 120
           +   RR    F +P+    R +          + ++ +   QSS    LNG  RLPG+VL
Sbjct: 61  TPRLRR---FFHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNGFFESLDWSPEIPTSRSQTITPVDADRLRWLPA------P 180
           LAR+RL ERLRG S  ++      SLD        R  +   +D D +  L         
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLD------DQRESSFHSIDGDPIFQLAGLQVTYEC 180

Query: 181 SKRPPGLSQDAINRLQIEIFINIEYIIDDDLTTTTTTASSDCSICLESFADGDKLIHLPC 240
           +K+P GL+QDAIN L  + F + E            +   DCSICLESF  GD LI LPC
Sbjct: 181 NKKPQGLTQDAINCLHRQTFSSAE----------VKSEMRDCSICLESFTKGDMLISLPC 240

Query: 241 EHKFHHACLEQWVRICGECPYCRRHI 260
            H FH +CL  W+R CG+CP CRR I
Sbjct: 241 THSFHSSCLNPWLRACGDCPCCRRAI 247

[Close]

BLAST of Sed0028168 vs. TAIR 10
Match: AT2G15580.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 9.7e-11
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 214 DCSICLESFADGDKLIHLPCEHKFHHACLEQWVRICGECPYCRRHIVN 262
           DC+ICL+ F  G+ L+HLPC HKFH  CL  W+     CPYCR  I N
Sbjct: 149 DCAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDIWN 196

[Close]

BLAST of Sed0028168 vs. TAIR 10
Match: AT5G55970.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-10
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 201 DDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHACLEQWVRICGECPYCRRHI 260
           D D  + T T   +C ICL  + D +++  LPC HKFH  C++QW+RI   CP C++ +
Sbjct: 283 DSDSDSATVTDDPECCICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRIISCCPLCKQDL 341

[Close]

BLAST of Sed0028168 vs. TAIR 10
Match: AT5G55970.2 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-10
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 201 DDDLTTTTTTASSDCSICLESFADGDKLIHLPCEHKFHHACLEQWVRICGECPYCRRHI 260
           D D  + T T   +C ICL  + D +++  LPC HKFH  C++QW+RI   CP C++ +
Sbjct: 283 DSDSDSATVTDDPECCICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRIISCCPLCKQDL 341

[Close]

BLAST of Sed0028168 vs. TAIR 10
Match: AT1G68070.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-09
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 213 SDCSICLESFADGDKLIHLPCEHKFHHACLEQWVRICGECPYCRRHIV 261
           +DC ICL S+ DG +L+ LPC H FH  C+ +W+++   CP C+ +I+
Sbjct: 290 ADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNIL 337

The following BLAST results are available for this feature:

BLAST of Sed0028168 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988901.1	1.6e-111	79.62	probable E3 ubiquitin-protein ligase RHY1A [Cucurbita maxima]	[more]
XP_023529438.1	2.6e-111	79.62	probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo]	[more]
XP_038888994.1	5.9e-111	78.46	probable E3 ubiquitin-protein ligase RHY1A [Benincasa hispida]	[more]
XP_022927900.1	2.5e-109	78.93	probable E3 ubiquitin-protein ligase RHY1A [Cucurbita moschata]	[more]
KAG6588706.1	1.2e-108	78.54	putative E3 ubiquitin-protein ligase RHY1A, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Sed0028168 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q852U6	5.3e-38	39.85	Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q9ULT6	6.1e-10	42.11	E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens OX=9606 GN=ZNRF3 PE=1 SV=3	[more]
Q08D68	8.0e-10	42.11	E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis OX=8364 GN=znrf3 PE=1 SV...	[more]
Q5SSZ7	1.4e-09	42.11	E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus OX=10090 GN=Znrf3 PE=1 SV=1	[more]
Q4KLR8	1.8e-09	42.11	E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis OX=8355 GN=znrf3 PE=2 SV=1	[more]

BLAST of Sed0028168 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JIJ3	7.5e-112	79.62	probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1EQ66	1.2e-109	78.93	probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A5A7SMR0	1.0e-108	77.22	E3 ubiquitin-protein ligase RLIM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3C156	1.0e-108	77.22	E3 ubiquitin-protein ligase RLIM OS=Cucumis melo OX=3656 GN=LOC103495299 PE=4 SV...	[more]
A0A0A0K6D2	1.2e-104	74.52	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071510 P...	[more]

BLAST of Sed0028168 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49850.1	3.8e-39	39.85	RING/U-box superfamily protein	[more]
AT2G15580.1	9.7e-11	54.17	RING/U-box superfamily protein	[more]
AT5G55970.1	3.7e-10	40.68	RING/U-box superfamily protein	[more]
AT5G55970.2	3.7e-10	40.68	RING/U-box superfamily protein	[more]
AT1G68070.1	2.4e-09	43.75	Zinc finger, C3HC4 type (RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 187..227 e-value: 1.8E-5 score: 34.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 186..228 e-value: 6.9E-13 score: 48.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 187..228 score: 12.828597
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 144..232 e-value: 1.2E-18 score: 68.5
None	No IPR available	PANTHER	PTHR45931:SF10	E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED	coord: 1..136 coord: 140..232
None	No IPR available	PANTHER	PTHR45931	SI:CH211-59O9.10	coord: 1..136 coord: 140..232
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 167..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028168.1	Sed0028168.1	mRNA
Sed0028168.2	Sed0028168.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0061630	ubiquitin protein ligase activity