Sed0028138 (gene) Chayote v1

Overview


Name	Sed0028138
Type	gene
Organism	Sechium edule (Chayote v1)
Description	VQ motif-containing protein
Location	LG07: 36453065 .. 36453651 (+)
RNA-Seq Expression	Sed0028138
Synteny	Sed0028138

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTAATTATTTCACTTCCAAATCAGAAAAAAAAACAACAAAATTCAAATCTTTCTCGATTATGAGCCCATCTAAATCCTGCAATCTCAATGGCCATCGTCCATCTCCTCTCCTTATCCACAAAGATTCTCGTACGATCCGAAAGCCCTCTCAGCCGCCACCGCAGCTCCGGCAACCGGTCATAATCTACGCCCATTCCCCCAAAATCATCCACACGCAGCCTAAAGATTTTATGGCCCTTGTCCAACGCCTCACCGGACGAGTGACGGTTAACGATAATTTGGTTTCAGAGAAGAATGTGAACGAGAATGATTGTTCGTCGGTTCTCACGGAGGACTATGATCAGAATAACAATTCTTCATCGTTTTTGTCAGCGGATGTTCCTTTGTTCACTCCTCGTTCTTCTCTTCTTAGGTATAATTCCTCCGAGAGGTCGCCGTTTTCGTCTCCGGCTTTGGTTAACTCTTTGTCTCCTTCTTTCATGGAGTTTCTCAAAGGACTGCCTGAATTTGAATCTTCTTAATTCCTCCACCTACGTGTGTTAATTTGGTTTCTTTCTTCCGGGATTGTTTGTTTGATTTTTTT

mRNA sequence

CTCTTTAATTATTTCACTTCCAAATCAGAAAAAAAAACAACAAAATTCAAATCTTTCTCGATTATGAGCCCATCTAAATCCTGCAATCTCAATGGCCATCGTCCATCTCCTCTCCTTATCCACAAAGATTCTCGTACGATCCGAAAGCCCTCTCAGCCGCCACCGCAGCTCCGGCAACCGGTCATAATCTACGCCCATTCCCCCAAAATCATCCACACGCAGCCTAAAGATTTTATGGCCCTTGTCCAACGCCTCACCGGACGAGTGACGGTTAACGATAATTTGGTTTCAGAGAAGAATGTGAACGAGAATGATTGTTCGTCGGTTCTCACGGAGGACTATGATCAGAATAACAATTCTTCATCGTTTTTGTCAGCGGATGTTCCTTTGTTCACTCCTCGTTCTTCTCTTCTTAGGTATAATTCCTCCGAGAGGTCGCCGTTTTCGTCTCCGGCTTTGGTTAACTCTTTGTCTCCTTCTTTCATGGAGTTTCTCAAAGGACTGCCTGAATTTGAATCTTCTTAATTCCTCCACCTACGTGTGTTAATTTGGTTTCTTTCTTCCGGGATTGTTTGTTTGATTTTTTT

Coding sequence (CDS)

ATGAGCCCATCTAAATCCTGCAATCTCAATGGCCATCGTCCATCTCCTCTCCTTATCCACAAAGATTCTCGTACGATCCGAAAGCCCTCTCAGCCGCCACCGCAGCTCCGGCAACCGGTCATAATCTACGCCCATTCCCCCAAAATCATCCACACGCAGCCTAAAGATTTTATGGCCCTTGTCCAACGCCTCACCGGACGAGTGACGGTTAACGATAATTTGGTTTCAGAGAAGAATGTGAACGAGAATGATTGTTCGTCGGTTCTCACGGAGGACTATGATCAGAATAACAATTCTTCATCGTTTTTGTCAGCGGATGTTCCTTTGTTCACTCCTCGTTCTTCTCTTCTTAGGTATAATTCCTCCGAGAGGTCGCCGTTTTCGTCTCCGGCTTTGGTTAACTCTTTGTCTCCTTCTTTCATGGAGTTTCTCAAAGGACTGCCTGAATTTGAATCTTCTTAA

Protein sequence

MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSSSFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEFESS

Homology

[Close]

BLAST of Sed0028138 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 6.2e-36
Identity = 101/169 (59.76%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMAL 60
           MSP+KSC++NG RPSPLLIHK SR IRK   PPPQLRQP+IIY HSPKIIHTQPKDFMAL
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRK---PPPQLRQPLIIYTHSPKIIHTQPKDFMAL 60

Query: 61  VQRLTGRVTV----NDNLVSEKNVN-ENDCSSVLTEDYD--------------QNNNSSS 120
           VQRLTG         D+     NVN +ND SSVLTE+ +              Q+ + S 
Sbjct: 61  VQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQSH 120

Query: 121 FLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF 151
              ADVPLFTP    LRY + + + F+SP L NSLSPSFMEFLKGLPEF
Sbjct: 121 SFLADVPLFTPAG--LRY-APDATSFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of Sed0028138 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 8.1e-36
Identity = 98/161 (60.87%), Postives = 107/161 (66.46%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMAL 60
           MSP KSC +NG RPSPLLIHKDSR IRK     PQLRQPVIIY HSPKIIHTQPKDFMAL
Sbjct: 1   MSPPKSCEINGPRPSPLLIHKDSRFIRK-----PQLRQPVIIYTHSPKIIHTQPKDFMAL 60

Query: 61  VQRLTG--------RVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSSSFLSADVPLFTP 120
           VQRLTG                 SE+N N+ND SS LT + + N       S  +     
Sbjct: 61  VQRLTGFNPPPPPPPSNALSLSFSERNFNDNDSSSGLTTEEEINECGDQKQSVVLKQLVQ 120

Query: 121 R---SSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF 151
           R   SSLLRY+S   +PFSSPAL+NSLSPSFMEFLK LPEF
Sbjct: 121 RQSNSSLLRYSSDVTTPFSSPALINSLSPSFMEFLKALPEF 156

[Close]

BLAST of Sed0028138 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30
Identity = 88/150 (58.67%), Postives = 98/150 (65.33%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMAL 60
           MSP K  +++G RP PLL+HK SRTIRKPS PPPQLR+PVIIY HSPKIIHTQPKDFMAL
Sbjct: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-PPPQLRRPVIIYTHSPKIIHTQPKDFMAL 60

Query: 61  VQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSSSFLSADVPLFTPRSSLLRYN 120
           VQRLTG    N +     N   ND SSV+TE+            ++ PLFTPRS      
Sbjct: 61  VQRLTGCSPPNADKAPSDN---NDSSSVVTEE-----------DSNCPLFTPRS------ 118

Query: 121 SSERSPFSSPALVNSLSPSFMEFLKGLPEF 151
                      LVNSLSPSFMEFLKGLPEF
Sbjct: 121 -----------LVNSLSPSFMEFLKGLPEF 118

[Close]

BLAST of Sed0028138 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-30
Identity = 84/150 (56.00%), Postives = 100/150 (66.67%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMAL 60
           MSP KS  +NG RPSPLLIH DSR +RK     PQLRQP+IIY HSPKIIHT PKDFMAL
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK-----PQLRQPLIIYTHSPKIIHTHPKDFMAL 60

Query: 61  VQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSSSFLSADVPLFTPRSSLLRYN 120
           VQRLTG          E+N N+ND +S +T + D N   S+             S+L+Y+
Sbjct: 61  VQRLTGFNPPPPQ--PERNSNDNDSTSGVTSEEDVNEKQSN------------CSVLKYS 120

Query: 121 SSERSPFSSPALVNSLSPSFMEFLKGLPEF 151
           S   +PFSSPA ++SLSPSFM+FLK LPEF
Sbjct: 121 SDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of Sed0028138 vs. NCBI nr
Match: XP_010099240.1 (VQ motif-containing protein 8, chloroplastic [Morus notabilis] >EXB77504.1 hypothetical protein L484_015429 [Morus notabilis])

HSP 1 Score: 117.9 bits (294), Expect = 7.9e-23
Identity = 83/194 (42.78%), Postives = 107/194 (55.15%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRKPS----QPPPQLRQPVIIYAHSPKIIHTQPKD 60
           MSP K   +NG RPSPL I+K+S TI KPS      PPQ  QPVIIY HSP+IIHT+P++
Sbjct: 1   MSPEKFIKINGARPSPLKINKESHTIYKPSNHHQMNPPQRHQPVIIYTHSPRIIHTEPRN 60

Query: 61  FMALVQRLTGRVTVNDN----------------------------LVSEKNVNENDCSSV 120
           FMA+VQ LTG    NDN                              SE   + N+ SSV
Sbjct: 61  FMAVVQNLTGMSRSNDNKNNHKTTSSSSQQRPISSQDSQPVISNSSTSEAKSDNNESSSV 120

Query: 121 LTEDYDQNNNSSSFLS----ADVPLFTPRSSLLRYNSSERSPF------SSPALVNS--L 151
           LT++ +  ++ +  LS    AD+PLFTP      +  S R+ F      SSP L +S  +
Sbjct: 121 LTDEINNGSDRNYTLSNPSLADIPLFTP-----NFFCSPRAAFRFPDATSSPNLGSSSLV 180

[Close]

BLAST of Sed0028138 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 63/153 (41.18%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRK----PSQPPPQLR-QPVIIYAHSPKIIHTQPK 60
           M P++   +NG RPS L +  +S TI+K     S+P P  R  PVIIYAHSPK+IHT+ +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYD--QNNNSSSFLS--------A 120
           DFMALVQRLTG     D ++  +N +E+  SSV+TE+ +   +N ++ F           
Sbjct: 61  DFMALVQRLTGL----DEII-RRNTSESS-SSVVTEEVNVGDDNTAAPFSQDRTQRQKLT 120

Query: 121 DVPLFTPRSSLLRYNSSERSPFSSPALVNSLSP 139
           D+PLFTP SS+  + S  +  + SP   +S  P
Sbjct: 121 DMPLFTP-SSMTLFGSPTQLMYMSPNRTDSFRP 146

[Close]

BLAST of Sed0028138 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 11 GHRPSPLLIHKDSRTIRKP----------SQPPPQL-RQPVIIYAHSPKIIHTQPKDFMA 67
          G RPSPL +HKDS  I+KP           QPPP + R+PV+IYA SPK++H    +FM 
Sbjct: 26 GPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASEFMN 85

[Close]

BLAST of Sed0028138 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 14  PSPLLIHKDSRTIRKPSQP-----PPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRV 73
           P  L ++KDS  I+KP  P       + R PVIIY H+P+IIHT PKDFMALVQ+LTG  
Sbjct: 43  PPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTGMT 102

Query: 74  TVND-----NLVSEKNVNENDCSSVLTEDYDQNNN 99
             ++     N +++  V ++   +V     D+ NN
Sbjct: 103 HSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNN 137

[Close]

BLAST of Sed0028138 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-06
Identity = 35/89 (39.33%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 2  SPSKSCNLNGHRPSPLLIHKDSRTIRK--------PSQPPPQLRQ-----------PVII 61
          SP    N+ G +P+PL +  DS  I K        P   PPQ  Q           PV I
Sbjct: 5  SPRSRGNM-GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNI 64

Query: 62 YAHSPKIIHTQPKDFMALVQRLTGRVTVN 72
          Y  +P+IIHT P +FM LVQRLTG+ + +
Sbjct: 65 YTVTPRIIHTHPNNFMTLVQRLTGQTSTS 92

[Close]

BLAST of Sed0028138 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.0e-36
Identity = 101/169 (59.76%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMAL 60
           MSP+KSC++NG RPSPLLIHK SR IRK   PPPQLRQP+IIY HSPKIIHTQPKDFMAL
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRK---PPPQLRQPLIIYTHSPKIIHTQPKDFMAL 60

Query: 61  VQRLTGRVTV----NDNLVSEKNVN-ENDCSSVLTEDYD--------------QNNNSSS 120
           VQRLTG         D+     NVN +ND SSVLTE+ +              Q+ + S 
Sbjct: 61  VQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQSH 120

Query: 121 FLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF 151
              ADVPLFTP    LRY + + + F+SP L NSLSPSFMEFLKGLPEF
Sbjct: 121 SFLADVPLFTPAG--LRY-APDATSFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of Sed0028138 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 84/150 (56.00%), Postives = 100/150 (66.67%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMAL 60
           MSP KS  +NG RPSPLLIH DSR +RK     PQLRQP+IIY HSPKIIHT PKDFMAL
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK-----PQLRQPLIIYTHSPKIIHTHPKDFMAL 60

Query: 61  VQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSSSFLSADVPLFTPRSSLLRYN 120
           VQRLTG          E+N N+ND +S +T + D N   S+             S+L+Y+
Sbjct: 61  VQRLTGFNPPPPQ--PERNSNDNDSTSGVTSEEDVNEKQSN------------CSVLKYS 120

Query: 121 SSERSPFSSPALVNSLSPSFMEFLKGLPEF 151
           S   +PFSSPA ++SLSPSFM+FLK LPEF
Sbjct: 121 SDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of Sed0028138 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 84/150 (56.00%), Postives = 100/150 (66.67%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMAL 60
           MSP KS  +NG RPSPLLIH DSR +RK     PQLRQP+IIY HSPKIIHT PKDFMAL
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK-----PQLRQPLIIYTHSPKIIHTHPKDFMAL 60

Query: 61  VQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSSSFLSADVPLFTPRSSLLRYN 120
           VQRLTG          E+N N+ND +S +T + D N   S+             S+L+Y+
Sbjct: 61  VQRLTGFNPPPPQ--PERNSNDNDSTSGVTSEEDVNEKQSN------------CSVLKYS 120

Query: 121 SSERSPFSSPALVNSLSPSFMEFLKGLPEF 151
           S   +PFSSPA ++SLSPSFM+FLK LPEF
Sbjct: 121 SDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of Sed0028138 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-28
Identity = 87/159 (54.72%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMAL 60
           MSP KS  +NG RPSPLLIH  SR IRK    P QLRQP+IIY HSPKIIHT PKDFMAL
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRK----PVQLRQPLIIYTHSPKIIHTHPKDFMAL 60

Query: 61  VQRLTG-------RVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSSSFLSADVPLFTPR 120
           VQRLTG        +      +SE+N+N+ND SS +T + D N   S+            
Sbjct: 61  VQRLTGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTEEDINEKQSN------------ 120

Query: 121 SSLLRYNSSE-RSPFSSPA-LVNSLSPSFMEFLKGLPEF 151
            S+L+Y+S +  +PFSSPA L +SLSPSFM+FLK LPEF
Sbjct: 121 CSVLKYSSHDVTTPFSSPAFLSSSLSPSFMDFLKALPEF 143

[Close]

BLAST of Sed0028138 vs. ExPASy TrEMBL
Match: W9RYA3 (VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_015429 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 83/194 (42.78%), Postives = 107/194 (55.15%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRKPS----QPPPQLRQPVIIYAHSPKIIHTQPKD 60
           MSP K   +NG RPSPL I+K+S TI KPS      PPQ  QPVIIY HSP+IIHT+P++
Sbjct: 1   MSPEKFIKINGARPSPLKINKESHTIYKPSNHHQMNPPQRHQPVIIYTHSPRIIHTEPRN 60

Query: 61  FMALVQRLTGRVTVNDN----------------------------LVSEKNVNENDCSSV 120
           FMA+VQ LTG    NDN                              SE   + N+ SSV
Sbjct: 61  FMAVVQNLTGMSRSNDNKNNHKTTSSSSQQRPISSQDSQPVISNSSTSEAKSDNNESSSV 120

Query: 121 LTEDYDQNNNSSSFLS----ADVPLFTPRSSLLRYNSSERSPF------SSPALVNS--L 151
           LT++ +  ++ +  LS    AD+PLFTP      +  S R+ F      SSP L +S  +
Sbjct: 121 LTDEINNGSDRNYTLSNPSLADIPLFTP-----NFFCSPRAAFRFPDATSSPNLGSSSLV 180

[Close]

BLAST of Sed0028138 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-16
Identity = 63/153 (41.18%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 1   MSPSKSCNLNGHRPSPLLIHKDSRTIRK----PSQPPPQLR-QPVIIYAHSPKIIHTQPK 60
           M P++   +NG RPS L +  +S TI+K     S+P P  R  PVIIYAHSPK+IHT+ +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYD--QNNNSSSFLS--------A 120
           DFMALVQRLTG     D ++  +N +E+  SSV+TE+ +   +N ++ F           
Sbjct: 61  DFMALVQRLTGL----DEII-RRNTSESS-SSVVTEEVNVGDDNTAAPFSQDRTQRQKLT 120

Query: 121 DVPLFTPRSSLLRYNSSERSPFSSPALVNSLSP 139
           D+PLFTP SS+  + S  +  + SP   +S  P
Sbjct: 121 DMPLFTP-SSMTLFGSPTQLMYMSPNRTDSFRP 146

[Close]

BLAST of Sed0028138 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 67.8 bits (164), Expect = 8.7e-12
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 11 GHRPSPLLIHKDSRTIRKP----------SQPPPQL-RQPVIIYAHSPKIIHTQPKDFMA 67
          G RPSPL +HKDS  I+KP           QPPP + R+PV+IYA SPK++H    +FM 
Sbjct: 26 GPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASEFMN 85

[Close]

BLAST of Sed0028138 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 14  PSPLLIHKDSRTIRKPSQP-----PPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRV 73
           P  L ++KDS  I+KP  P       + R PVIIY H+P+IIHT PKDFMALVQ+LTG  
Sbjct: 43  PPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTGMT 102

Query: 74  TVND-----NLVSEKNVNENDCSSVLTEDYDQNNN 99
             ++     N +++  V ++   +V     D+ NN
Sbjct: 103 HSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNN 137

[Close]

BLAST of Sed0028138 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-08
Identity = 36/86 (41.86%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 5  KSCNLNGHRPSPLLIHKDSRTIRK--------PSQPPPQLRQ-----------PVIIYAH 64
          +S  + G RP PL +  DS  I K        P   PPQ  Q           PVIIY  
Sbjct: 7  RSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTV 66

Query: 65 SPKIIHTQPKDFMALVQRLTGRVTVN 72
          SP+IIHT P +FM LVQRLTG+ + +
Sbjct: 67 SPRIIHTHPNNFMTLVQRLTGKTSTS 92

[Close]

BLAST of Sed0028138 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 52.4 bits (124), Expect = 3.8e-07
Identity = 35/89 (39.33%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 2  SPSKSCNLNGHRPSPLLIHKDSRTIRK--------PSQPPPQLRQ-----------PVII 61
          SP    N+ G +P+PL +  DS  I K        P   PPQ  Q           PV I
Sbjct: 5  SPRSRGNM-GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNI 64

Query: 62 YAHSPKIIHTQPKDFMALVQRLTGRVTVN 72
          Y  +P+IIHT P +FM LVQRLTG+ + +
Sbjct: 65 YTVTPRIIHTHPNNFMTLVQRLTGQTSTS 92

The following BLAST results are available for this feature:

BLAST of Sed0028138 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150646.1	6.2e-36	59.76	VQ motif-containing protein 8, chloroplastic [Momordica charantia]	[more]
XP_038893302.1	8.1e-36	60.87	VQ motif-containing protein 8, chloroplastic [Benincasa hispida]	[more]
KAG7013019.1	1.3e-30	58.67	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_008466850.1	2.3e-30	56.00	PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA...	[more]
XP_010099240.1	7.9e-23	42.78	VQ motif-containing protein 8, chloroplastic [Morus notabilis] >EXB77504.1 hypot...	[more]

BLAST of Sed0028138 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA36	1.1e-14	41.18	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8LGD5	1.2e-10	52.24	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
Q9LS54	3.0e-09	41.05	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
F4HWF9	5.3e-06	39.33	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of Sed0028138 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DC48	3.0e-36	59.76	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5D3CFH5	1.1e-30	56.00	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS67	1.1e-30	56.00	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KT78	3.0e-28	54.72	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
W9RYA3	3.8e-23	42.78	VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_015429 PE=4 SV...	[more]

BLAST of Sed0028138 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68450.1	7.6e-16	41.18	VQ motif-containing protein	[more]
AT3G18690.1	8.7e-12	52.24	MAP kinase substrate 1	[more]
AT3G18360.1	2.2e-10	41.05	VQ motif-containing protein	[more]
AT1G21326.1	2.0e-08	41.86	VQ motif-containing protein	[more]
AT1G21320.1	3.8e-07	39.33	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 45..67 e-value: 1.1E-10 score: 40.8
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 8..150
IPR039833	VQ motif-containing protein 8, chloroplastic	PANTHER	PTHR33143:SF42	VQ MOTIF-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 8..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028138.1	Sed0028138.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030684	preribosome