Sed0028101 (gene) Chayote v1

Overview


Name	Sed0028101
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein l3
Location	LG02: 48351629 .. 48356789 (+)
RNA-Seq Expression	Sed0028101
Synteny	Sed0028101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGTTAAAACCCTAAACCCCGAATCGCTCGCGGCCGCTCTCCCTCCATCAAGCCGCTGCACAGAGAATGAAATTCCACCGTCTCCGAGATCGAAACCAACCCTAAAACTGAGCCCAAACCCTAATTTCCCTCTCCCTTCTCCCATTTTCCGGCCGCCATTAAAATCGCCGCGATTGGTTTCCACCATGGCGGCTTTATCCAGAGGTCTCATTTCCCGTTTTCGTCTTCTCTCGATCAATTCCGGCGCCTCTCCCACAGTCACTTCATCTTCTTCTTCGTCGTTGGCGAATCCGTCTTGCCATTACTTCTTCCGTACTTTCAGTACGGAGAGTTCGATCCAGGCCGGCGTTGTTGAAGCAAAACCTGGTGTTATGACCCCTAACTCGAAGCGGACCGGCGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTTTGGGATAAATGGGGAGCTAGGGTTCCCATCACTGTGCTTTGGGTTGATGATAACATTGTGTCTCAGGTTAAGACCATTGAGAAAGAAGGCATCACAGCTCTCCAGGTACTGTTCGGATTTCTTATTCTTGATTTCATTTTTGCAGCCGATTCGTTTTTGTTTCTGGAAATTGTAGTGGATGGGCGTCTAAGTACAAATGTAGTTGAATTCTAAATTATTTGCATCAATAATCTTTAATACTGTAGTTTAAGGTGGCTGCGACATTAATTTGTAGATACCTCCATTGCTTTGATGTGTCTCCGGCCTAGGGACGGACGTGGTTAACCCTATATGGTGGAGAAAAGCTTTGATTTCCGGGTTTTCAATACAATAAAACTTTAACCGTGTATTATAAATACTCATTAATACCAGTATTATAAGATAGTATTTGACTAGTTAATATAATTACTATATTTGCTAATTTTTTTTTAAAATGACCGTATTTGTAATTATTTTTCAGATTTGACTAGTTTAAGTTTCCCTTTTGTTTATTCGCCTTGTTAGTTACTGCTTAGATGAAATTGGGAGAGACTGGGAATTAGAAAAGTGATACCTATGGCCCTGGTTTTGTTGGTTTCTATCACATTCTTACAACAAAAGAAACAGGAATGAGAAAGGATTTTGGCTGAATGATGCTGACGCGTCTATTTTCGGAATACTATTTGCTATGTTACTCTCTTATGCGAAAGGGATAAGCTGTTCTTCTAGCAGTCCTACACCTTTTTGCAAGCATTACCATCTTTCGATGGTTAGCAGTTCTACACTTTCGATTCCCTGAATTCTGGAATTGTACTGAGCTGAACTGCACACTGTTGTTTTGGACCAGCATTTTTCTTTTCCATATTCCATCATCACTTCTATTCACACTCGTTGCTAGGTGTGAATATGTTTTTTTGGATGATATACCCAAGTTTTCATTGAGAGAAAAATGAAAGAACCAATGAAGTAAAATAATGCTAAGAAAATTATTACAAAAAAGCTTAGCAATAGAAGCCAAAGATCCTGTGGTCCCCAAGGGGTGGCGCAGTGGTTCAAGACTTGGGCTTTGAGGGTATGTTTCCCTTAAGGTCCCAGGTTCGAGACTCAGCAGTGACATTACTCCTTCGATGTCTCCGGTACCTGGCCTAGGGACGGGCGTGGTTACGTTGTTTAAAAAAAAAAGAAGCCAAAGATCCTGTGTAGACCCGTGACTCGTGAATATAACCATTTGTGATGGGTGTCGAGGGTTGCACTCCTCGTATCATGTTCATGAATGACCCCACCAATCTCCGGGAGGTCTCAACCCCACTAACATTTACTCCCGTTAGTGATTTTACTATCAACTGACCATTAGACCATACGTATAACATATGAAGTCTGTTTTTTTTCCTGTTTTTTCGAACCTTATGGCCCACGACTTGAATTTACTGACCAAAGGTGTGCTATGGTGCTAGTTAGATTGGCTGTGGACAGAAGAAGGAGAAGCATTTGACAAAACCTGAAGTAGGTCATTTTAGAGCTCAAGGTGTTCCAATGAAGAGGAAACTGAGGGAGTTTCCAGTGTCAGAAGATGCACTTCTTCCTGTCGGTACAACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTGTTGACGTGACTGGAATCACAAGAGGGAAAGGTTTTCAGGTGAGTCCATTGCAGCATTCCTCTACGAATTTGTGAACTTCACAGCATGTCCTTTACTCATTTTTATTTTTCACTCAATTTCTTATATTTGTTAATTCTATCAAGTTAGTTGCATATCTGATGTTGACTTGTATAAGTGTATTGTTTTTCAATTTAGGTCAAATTATTACCAATTAAAAGCTGTTTTGTGATGATTGAATAACTAGACATGCAAAAGTGAACAACATAAATGAAGCAACAATATCAAGTTAAACTAGCGGGGAAGTTTCTAAAAATACTGTTAGTTTCTTGTTTCTTTCTTCCTTTTTTTTTTAATATAAATATCAGTGAGTATTTGGGCCGGCTTATGTGCACCTTCACTATTTCTTATTGGACAAATCGCTTGACCCTAATATTTGGTTGCCAAGGAAACCCATTGTCAACTTCCAAACATTGCATCATCGTAGTCACATTTGTGGCTGTGAGTATTTTGATATATTTAGTAAGCACTCAACAAATATTTACATGAGACGCAGTAAACCCCCCTTATCTTTTGATATTTTATCATGAATCATGATTTAAATTAACCTAGTTCGATCATGTTCGAACCCGTTTATTGGTTTTCCCGACAAGAACTACGCTTGATTGACATGATGATGACCTGATAACCTAGAAGTTATTGGTTCGAATTTTCCACTCCCTTTTGAATTCAATTTTTTTTTTACCTAACATGATGCATGACCTGGGCTGCTAGATAGAATTTAAACATCAAAGTCACAGTGCTGTACATGTGTATGTTATTACAAGATAACGCGGACAATTTCTTAATGAGGTCACGGACTCACGTGCATCCTCACGATGATAAGAATAAAAAGAATAATATAATTCATGGATATCCGTAAACATGAAAATATTTGGGACTCTACTCTATACAAATCCTAGGAAATACTTATACAGGAATATTTACGTGGAGCTGTGTTCTTTGCTTTGTATTCTTTCATGTTTATGCTAGTTTGTCTAATATCGAGTTGAATATTTGCGTCCTAAAAAGGCTTCATGGTCCAGAATTATCATAAAAAATTGTTTTCTTTCCGCGTGTTAATGGTAAAATATCTAATCCATAAAAGTGAAGTCTGTCATGGCTAATCCTAATTCTAATTGTGCACAGGGACCGATGAAAAGGCATCATTTTGATGGAGGTCCGGCATCCCATGGAGCGTCATTATCCCACAGATCCGGTGGTTCTACTGGTCAGAGGGATGCCCCTGGAAAGGTGTGTGTTTATCTTTTCATGGTGACGTTCATTTTAAGATTGAGTAGTCTTTCATAGGGGTGTATAAAAGAGCCCACAATCCAAACAACCTGGACTACCCAACCTAAATTGTAAGGGTTGAGTTGTAAATTTTTTTGGGTTGGATTAGTTTTTGGGTTGACCAATTTTTAGCTCGTTCAACTCAATCCTAGAATAATATATATATATATATGTATGTATGTATGTATATATTTATATGTGTGTAGGATTAATTAATAAGATACGTTCTTAACATATTGATAAGGAATATTCACTAATAAGACAGGTCATAGGTTCAACTTTGAAGTATAATATCACATGCATATTTTCTTTATTTGTTTAGACATTTATGGGCATGAGTTGAGTTTGTTTTTATGAGAGAGGAGATTAACCAAACTCGAGAATCCAACTAACTTGAAAATATAGGATTAAGTGGAGTTCGGTTCCTATAATGCTTAGGGTTGGATTGGTTGGAGGATTGATCAATCCAAAAATTTGACTTGATAAAAAAAACATTCCTAACCCAACCCAACCCGGACCATGTACCCTACTCTTTCAGTTCTCAAATGTATTTTAGAGCTACCGGAAACTCTCACATTTGAGATAGCAGGATAGTTAGATTTCTTTTGCATGTGGAACCACAAAAACTTTTGTATTTAATGATAGAAGCCTGAGTTTAAAAACAGAAAAATTATCTGAAGGGTGGAATAAAATTTTATGGTCTGTTATGTAGCAAATTTTACTGTACACCATGTAATTTACTACCATGAGAAACATGTGCTTATTTTGTAGGTCTTCAAAGGTAAAAAAATGGCTGGGCGTATGGGTGGAAAGCAGAGAACTGTAAAAAATGTGTGGGTATACAAAATTGATCCAGCAAGAAACCTAATATGGGTGAGAGGACAAGTAAGTTTCTTTCTAAAACCAAATTTCAAACTTTTGTTATTGGAAACTTGGAAATTGGAGCTTCGTTCCCTTATACAAGGGGGAACCATTGGCTGTCAACTAGGCTGTGACACTGGAATACATTAGAGGGTATTCTTAATTAAGCGCTTCTCATCGGTCTCGAACCAGGAACATACAAGGGAGCATACTTCTAAATCCATTAGCCTCAATCAACTGGGCTGCACATCGGGATCCATATACTAGAGTCCATGTTCTGTGTTCAGACATGAATATCACTCTCCGAATGTCACTGTCTGAGTTTTTTGCTAAACACGCCTTCTCCTTTCAGGTCCCCGGAGCCGAAGGTAACTTTGTATTTATAAAAGACGCATTCTACAAGAAACCCGACAAGTCGATCCTCCCATTTCCCACCTACTTTGCACCCGACAACGAGGACACAGAGAAGTTGGAACCTCTCGTCGCTGATCTCGGAGAAGTAGATCCATTCATGGTTGGCGAATGATAGGGAGTTTAACCTTTTCGGCGTAAGTTGCGCATTTTGCTCTGTTATTGAAGACCCTCATGGGTAGTCAATTTCATTATAGAAATGCAGTTGGAGAAGATCTGTATGAGGCAATCCAATCTCCTAATGCCATGGCAATCTACCATTATTTATTTTTCTTTTTAAAAAATTATCTCACCATCTCAAACTTGTACTGGAAAATGCCATTTTGAAATAAAGAGTAGAAAAAAGCTTATGATTATTGAGGTTTTTTTTTGTTGAGTTGCCTCATGATTTCATTTGAGAGTTGGAAGTTAATGTTTATGTGACCTTAGAAGAAAGAGATTGTTATTAACTTCTTCCTGATCTTATAGCGTGCTGAAG

mRNA sequence

GTTTTGTTAAAACCCTAAACCCCGAATCGCTCGCGGCCGCTCTCCCTCCATCAAGCCGCTGCACAGAGAATGAAATTCCACCGTCTCCGAGATCGAAACCAACCCTAAAACTGAGCCCAAACCCTAATTTCCCTCTCCCTTCTCCCATTTTCCGGCCGCCATTAAAATCGCCGCGATTGGTTTCCACCATGGCGGCTTTATCCAGAGGTCTCATTTCCCGTTTTCGTCTTCTCTCGATCAATTCCGGCGCCTCTCCCACAGTCACTTCATCTTCTTCTTCGTCGTTGGCGAATCCGTCTTGCCATTACTTCTTCCGTACTTTCAGTACGGAGAGTTCGATCCAGGCCGGCGTTGTTGAAGCAAAACCTGGTGTTATGACCCCTAACTCGAAGCGGACCGGCGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTTTGGGATAAATGGGGAGCTAGGGTTCCCATCACTGTGCTTTGGGTTGATGATAACATTGTGTCTCAGGTTAAGACCATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGAGAAGCATTTGACAAAACCTGAAGTAGGTCATTTTAGAGCTCAAGGTGTTCCAATGAAGAGGAAACTGAGGGAGTTTCCAGTGTCAGAAGATGCACTTCTTCCTGTCGGTACAACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTGTTGACGTGACTGGAATCACAAGAGGGAAAGGTTTTCAGGGACCGATGAAAAGGCATCATTTTGATGGAGGTCCGGCATCCCATGGAGCGTCATTATCCCACAGATCCGGTGGTTCTACTGGTCAGAGGGATGCCCCTGGAAAGGTCTTCAAAGGTAAAAAAATGGCTGGGCGTATGGGTGGAAAGCAGAGAACTGTAAAAAATGTGTGGGTATACAAAATTGATCCAGCAAGAAACCTAATATGGGTGAGAGGACAAGTCCCCGGAGCCGAAGGTAACTTTGTATTTATAAAAGACGCATTCTACAAGAAACCCGACAAGTCGATCCTCCCATTTCCCACCTACTTTGCACCCGACAACGAGGACACAGAGAAGTTGGAACCTCTCGTCGCTGATCTCGGAGAAGTAGATCCATTCATGGTTGGCGAATGATAGGGAGTTTAACCTTTTCGGCGTAAGTTGCGCATTTTGCTCTGTTATTGAAGACCCTCATGGGTAGTCAATTTCATTATAGAAATGCAGTTGGAGAAGATCTGTATGAGGCAATCCAATCTCCTAATGCCATGGCAATCTACCATTATTTATTTTTCTTTTTAAAAAATTATCTCACCATCTCAAACTTGTACTGGAAAATGCCATTTTGAAATAAAGAGTAGAAAAAAGCTTATGATTATTGAGGTTTTTTTTTGTTGAGTTGCCTCATGATTTCATTTGAGAGTTGGAAGTTAATGTTTATGTGACCTTAGAAGAAAGAGATTGTTATTAACTTCTTCCTGATCTTATAGCGTGCTGAAG

Coding sequence (CDS)

ATGGCGGCTTTATCCAGAGGTCTCATTTCCCGTTTTCGTCTTCTCTCGATCAATTCCGGCGCCTCTCCCACAGTCACTTCATCTTCTTCTTCGTCGTTGGCGAATCCGTCTTGCCATTACTTCTTCCGTACTTTCAGTACGGAGAGTTCGATCCAGGCCGGCGTTGTTGAAGCAAAACCTGGTGTTATGACCCCTAACTCGAAGCGGACCGGCGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTTTGGGATAAATGGGGAGCTAGGGTTCCCATCACTGTGCTTTGGGTTGATGATAACATTGTGTCTCAGGTTAAGACCATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGAGAAGCATTTGACAAAACCTGAAGTAGGTCATTTTAGAGCTCAAGGTGTTCCAATGAAGAGGAAACTGAGGGAGTTTCCAGTGTCAGAAGATGCACTTCTTCCTGTCGGTACAACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTGTTGACGTGACTGGAATCACAAGAGGGAAAGGTTTTCAGGGACCGATGAAAAGGCATCATTTTGATGGAGGTCCGGCATCCCATGGAGCGTCATTATCCCACAGATCCGGTGGTTCTACTGGTCAGAGGGATGCCCCTGGAAAGGTCTTCAAAGGTAAAAAAATGGCTGGGCGTATGGGTGGAAAGCAGAGAACTGTAAAAAATGTGTGGGTATACAAAATTGATCCAGCAAGAAACCTAATATGGGTGAGAGGACAAGTCCCCGGAGCCGAAGGTAACTTTGTATTTATAAAAGACGCATTCTACAAGAAACCCGACAAGTCGATCCTCCCATTTCCCACCTACTTTGCACCCGACAACGAGGACACAGAGAAGTTGGAACCTCTCGTCGCTGATCTCGGAGAAGTAGATCCATTCATGGTTGGCGAATGA

Protein sequence

MAALSRGLISRFRLLSINSGASPTVTSSSSSSLANPSCHYFFRTFSTESSIQAGVVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFAPDNEDTEKLEPLVADLGEVDPFMVGE

Homology

[Close]

BLAST of Sed0028101 vs. NCBI nr
Match: KAG6597593.1 (50S ribosomal protein L3-2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 579.7 bits (1493), Expect = 1.5e-161
Identity = 293/327 (89.60%), Postives = 307/327 (93.88%), Query Frame = 0


Query: 1   MAALSRGLISRFRLLSINSGASPTVTSSSSSSLA--NPSCHYFFRTFSTESSIQAG---- 60
           M+ALSRGLISRFRLLSINS ASPT+TSSSSSS +  +PSC++FFRTFSTE SIQAG    
Sbjct: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  ----VVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
               ++EAKPGVM+PNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHLTKPEVGHFRAQGVP+KRKLREFPV+EDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMA 240
           PGQFVDVTGITRGKGFQG MKRH FDG PASHGASLSHRS GSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQFVDVTGITRGKGFQGVMKRHGFDGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNL+WVRGQVPGAEGNFVFIKDAFYKKP+KSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYF 300

Query: 301 APDNEDTEKLEPLVADLGEVDPFMVGE 318
           A D+EDTE LEPLVADLGEVDPFMVGE
Sbjct: 301 ANDDEDTETLEPLVADLGEVDPFMVGE 327

[Close]

BLAST of Sed0028101 vs. NCBI nr
Match: XP_022972230.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 578.9 bits (1491), Expect = 2.6e-161
Identity = 293/326 (89.88%), Postives = 305/326 (93.56%), Query Frame = 0


Query: 1   MAALSRGLISRFRLLSINSGASPTVT-SSSSSSLANPSCHYFFRTFSTESSIQAG----- 60
           M+ALSRGLISRFRLLSINSGASPT+T SSSSSS  +PSC++FFRTFSTE SIQAG     
Sbjct: 1   MSALSRGLISRFRLLSINSGASPTITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60

Query: 61  ---VVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120
              ++EAK GVM+PNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE
Sbjct: 61  SSPIIEAKSGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120

Query: 121 GITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFVP 180
           GITALQIGCGQKK KHLTKPE+GHFRAQGVP+KRKLREFPVSEDALLPVGTTIGVRHFVP
Sbjct: 121 GITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLREFPVSEDALLPVGTTIGVRHFVP 180

Query: 181 GQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMAG 240
           GQFVDVTGITRGKGFQG MKRH F G PASHGASLSHRS GSTGQRDAPGKVFKGKKMAG
Sbjct: 181 GQFVDVTGITRGKGFQGVMKRHGFKGMPASHGASLSHRSPGSTGQRDAPGKVFKGKKMAG 240

Query: 241 RMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA 300
           RMGGKQRTVKNVWVYKIDPARNL+WVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA
Sbjct: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA 300

Query: 301 PDNEDTEKLEPLVADLGEVDPFMVGE 318
            D+EDTE LEPLVADLGEVDPFMVGE
Sbjct: 301 NDDEDTETLEPLVADLGEVDPFMVGE 326

[Close]

BLAST of Sed0028101 vs. NCBI nr
Match: XP_022947107.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 575.5 bits (1482), Expect = 2.9e-160
Identity = 290/327 (88.69%), Postives = 306/327 (93.58%), Query Frame = 0


Query: 1   MAALSRGLISRFRLLSINSGASPTVTSSSSSSLA--NPSCHYFFRTFSTESSIQAG---- 60
           M+ALSRGLISRFRLLSINS ASPT+TSSSSSS +  +PSC++FFRTFSTE SIQAG    
Sbjct: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  ----VVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
               ++EAKPGVM+PNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHLTKPEVGHFRAQGVP+KRKLREFPV+EDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMA 240
           PGQF+DVTGITRGKGFQG MK+H F G PASHGASLSHRS GSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNL+WVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300

Query: 301 APDNEDTEKLEPLVADLGEVDPFMVGE 318
           A ++EDTE LEPLVADLGEVDPFMVGE
Sbjct: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 327

[Close]

BLAST of Sed0028101 vs. NCBI nr
Match: KAG7029037.1 (50S ribosomal protein L3-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 575.5 bits (1482), Expect = 2.9e-160
Identity = 290/327 (88.69%), Postives = 306/327 (93.58%), Query Frame = 0


Query: 1   MAALSRGLISRFRLLSINSGASPTVTSSSSSSLA--NPSCHYFFRTFSTESSIQAG---- 60
           M+ALSRGLISRFRLLSINS ASPT+TSSSSSS +  +PSC++FFRTFSTE SIQAG    
Sbjct: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  ----VVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
               ++EAKPGVM+PNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHLTKPEVGHFRAQGVP+KRKLREFPV+EDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMA 240
           PGQF+DVTGITRGKGFQG MK+H F G PASHGASLSHRS GSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNL+WVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300

Query: 301 APDNEDTEKLEPLVADLGEVDPFMVGE 318
           A ++EDTE LEPLVADLGEVDPFMVGE
Sbjct: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 327

[Close]

BLAST of Sed0028101 vs. NCBI nr
Match: XP_023540684.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 573.5 bits (1477), Expect = 1.1e-159
Identity = 290/326 (88.96%), Postives = 304/326 (93.25%), Query Frame = 0


Query: 1   MAALSRGLISRFRLLSINSGASPTVT-SSSSSSLANPSCHYFFRTFSTESSIQAG----- 60
           M+ALSRGLISRFRLLSINS ASP +T SSSSSS  +PSC++FFRTFSTE SIQAG     
Sbjct: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60

Query: 61  ---VVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120
              ++EAKPGVM+PNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE
Sbjct: 61  SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120

Query: 121 GITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFVP 180
           GITALQIGCGQKK KHLTKPEVGHFRAQGVP+KRKLREFPV+EDALLPVGTTIGVRHFVP
Sbjct: 121 GITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP 180

Query: 181 GQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMAG 240
           GQFVDVTGITRGKGFQG MK+H F G PASHGASLSHRS GSTGQRDAPGKVFKGKKMAG
Sbjct: 181 GQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAG 240

Query: 241 RMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA 300
           RMGGKQRTVKNVWVYKIDPARNL+WVRGQVPGAEGNFVFIKDAFYKKP+KSILPFPTYFA
Sbjct: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFA 300

Query: 301 PDNEDTEKLEPLVADLGEVDPFMVGE 318
            D+EDTE LEPLVADLGEVDPFMVGE
Sbjct: 301 NDDEDTETLEPLVADLGEVDPFMVGE 326

[Close]

BLAST of Sed0028101 vs. ExPASy Swiss-Prot
Match: Q9LRN8 (50S ribosomal protein L3-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL3B PE=1 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 1.4e-133
Identity = 242/329 (73.56%), Postives = 274/329 (83.28%), Query Frame = 0


Query: 1   MAALSRGLISRF-RLLSINSGASPTVTSSSSSSLANPSCHYFFRTFSTESSIQAG----- 60
           MAA+ RGL+SR  + LSI S     +T SSS SL + S  +  R FS+++ +  G     
Sbjct: 1   MAAVPRGLLSRINQFLSIRS-----ITPSSSESLPHCSSFFLIRRFSSDTGLMDGGGSDI 60

Query: 61  ------VVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTI 120
                 ++EAK G M+  SKRTG+IAVKCGM+ALWDKWG R+PI++LWVDDNIVSQVKT+
Sbjct: 61  IGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKTV 120

Query: 121 EKEGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRH 180
           EKEGI ALQIGCGQKK KHL+K  VGHFRAQGVP+KRKLREFPV+EDALLPVGT++GVRH
Sbjct: 121 EKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRH 180

Query: 181 FVPGQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKK 240
           FVPGQ+VDVTGITRGKGFQG MKRH F G PASHGASLSHRSGGSTGQRDAPGKVFKG+K
Sbjct: 181 FVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRK 240

Query: 241 MAGRMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPT 300
           MAGRMG  QRTVKNVWVYKIDPARNL+WVRGQVPGAEGNFVFIKDA+ KKPD S LPFPT
Sbjct: 241 MAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFPT 300

Query: 301 YFAPDNEDTEKLEPLVADLGEVDPFMVGE 318
           Y AP++ED  +LEPLVADLGEVDPFM+ E
Sbjct: 301 YLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of Sed0028101 vs. ExPASy Swiss-Prot
Match: Q5NQ64 (50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rplC PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.1e-56
Identity = 119/238 (50.00%), Postives = 156/238 (65.55%), Query Frame = 0


Query: 69  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 128
           RTGVIA K GM+ L+ + G  VP+TVL ++D  V  VK  +++G  A+Q+G G  K K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNV 61

Query: 129 TKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 188
           TKP  GHF    V +K KL EFPVSEDA+L VGT+I   HF+ GQ VD++G T+GKGF G
Sbjct: 62  TKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAG 121

Query: 189 PMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 248
            MKR  F G  A+HG SLSHRS GSTG R  PG+VFK KKMAG MG +QRT +N+ V   
Sbjct: 122 AMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVIST 181

Query: 249 DPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFAPDNEDTEKLEPLVAD 307
           D  R+LI+VRG VPG++G ++ I+DA  K    +  P+P      N +     P+ A+
Sbjct: 182 DAERDLIFVRGSVPGSKGAWLIIRDA-VKVARPTDAPYPAAIKAANGNEAPAAPVAAE 238

[Close]

BLAST of Sed0028101 vs. ExPASy Swiss-Prot
Match: Q5FTY3 (50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rplC PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 6.8e-56
Identity = 118/219 (53.88%), Postives = 147/219 (67.12%), Query Frame = 0


Query: 69  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 128
           RTG+IA K GM+ L+ + G  VP+TVL +D+  V   +T E++G TA+Q+G G  K K++
Sbjct: 2   RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDNVEVVDARTNERDGYTAIQLGLGNAKVKNV 61

Query: 129 TKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 188
           TK   GHF    V  KR L EF VSEDALL  GT +   HFV GQ VDVTG ++GKGF G
Sbjct: 62  TKANRGHFARTKVEPKRHLAEFRVSEDALLEAGTKLSAAHFVVGQKVDVTGQSKGKGFAG 121

Query: 189 PMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 248
            MKRH+F G  ASHG S+SHRS GSTGQR  PGKVFKGKKMAG MG ++ T  N+ +  +
Sbjct: 122 VMKRHNFAGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGDERVTTLNLEIAAV 181

Query: 249 DPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFP 288
           D  RNLI VRG +PGA+   V I+DA  KK   +  P+P
Sbjct: 182 DEERNLIMVRGAIPGAKNGLVLIRDAI-KKARHADAPYP 219

[Close]

BLAST of Sed0028101 vs. ExPASy Swiss-Prot
Match: Q2G8Y0 (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplC PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 8.9e-56
Identity = 108/206 (52.43%), Postives = 149/206 (72.33%), Query Frame = 0


Query: 69  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 128
           RTGVIA K GM+ L+ + G  VP+TVL +++  V  V+T E++G  ALQ+G G+ K+K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNV 61

Query: 129 TKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 188
            KP+  HF    VP+K ++ EF V++DALL VG+TI   HFVPGQ+VD+TG T+GKGFQG
Sbjct: 62  AKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQG 121

Query: 189 PMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 248
            MKR  F G  A+HG S+SHR+ GSTG R  PG+VFK KKMAG MG +QRT +N+ V + 
Sbjct: 122 AMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRT 181

Query: 249 DPARNLIWVRGQVPGAEGNFVFIKDA 275
           D  R LI+V+G VPG++  ++ ++DA
Sbjct: 182 DDERGLIFVKGSVPGSKNAWLLVRDA 207

[Close]

BLAST of Sed0028101 vs. ExPASy Swiss-Prot
Match: Q11HQ2 (50S ribosomal protein L3 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplC PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 9.9e-55
Identity = 118/240 (49.17%), Postives = 153/240 (63.75%), Query Frame = 0


Query: 69  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 128
           R+GVIA K GM+ ++++ G  +P+TVL +++  V   +T EK G TA+Q+G G  K K+ 
Sbjct: 2   RSGVIAQKIGMTRVYNETGEHIPVTVLRMENCQVVAQRTEEKNGYTAVQLGVGLAKVKNT 61

Query: 129 TKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 188
           +K   GHF A  V  K K+ EF VS + LL VG  I   HFVPGQ VDVTG + GKGFQG
Sbjct: 62  SKALRGHFAAASVEPKAKVAEFRVSPENLLDVGAEITADHFVPGQKVDVTGTSIGKGFQG 121

Query: 189 PMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 248
            MKRH+F GG A+HG S+SHR+ GSTGQR  PGKVFKGKKMAG MG ++ T +N+ V   
Sbjct: 122 VMKRHNFGGGRATHGNSVSHRTHGSTGQRQDPGKVFKGKKMAGHMGDRRVTTQNLEVVST 181

Query: 249 DPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFAPDNEDTEKLEPLVADLG 308
           D  R LI VRG VPG++G+++ ++DA  K P     P P      N + EK     A  G
Sbjct: 182 DTERGLILVRGAVPGSKGSWIMVRDA-VKAPLPKEAPLPAAIRASNNNAEKAAATAAGEG 240

[Close]

BLAST of Sed0028101 vs. ExPASy TrEMBL
Match: A0A6J1I7Y9 (50S ribosomal protein L3-2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470821 PE=3 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 1.3e-161
Identity = 293/326 (89.88%), Postives = 305/326 (93.56%), Query Frame = 0


Query: 1   MAALSRGLISRFRLLSINSGASPTVT-SSSSSSLANPSCHYFFRTFSTESSIQAG----- 60
           M+ALSRGLISRFRLLSINSGASPT+T SSSSSS  +PSC++FFRTFSTE SIQAG     
Sbjct: 1   MSALSRGLISRFRLLSINSGASPTITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60

Query: 61  ---VVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120
              ++EAK GVM+PNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE
Sbjct: 61  SSPIIEAKSGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120

Query: 121 GITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFVP 180
           GITALQIGCGQKK KHLTKPE+GHFRAQGVP+KRKLREFPVSEDALLPVGTTIGVRHFVP
Sbjct: 121 GITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLREFPVSEDALLPVGTTIGVRHFVP 180

Query: 181 GQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMAG 240
           GQFVDVTGITRGKGFQG MKRH F G PASHGASLSHRS GSTGQRDAPGKVFKGKKMAG
Sbjct: 181 GQFVDVTGITRGKGFQGVMKRHGFKGMPASHGASLSHRSPGSTGQRDAPGKVFKGKKMAG 240

Query: 241 RMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA 300
           RMGGKQRTVKNVWVYKIDPARNL+WVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA
Sbjct: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA 300

Query: 301 PDNEDTEKLEPLVADLGEVDPFMVGE 318
            D+EDTE LEPLVADLGEVDPFMVGE
Sbjct: 301 NDDEDTETLEPLVADLGEVDPFMVGE 326

[Close]

BLAST of Sed0028101 vs. ExPASy TrEMBL
Match: A0A6J1G5I5 (50S ribosomal protein L3-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451076 PE=3 SV=1)

HSP 1 Score: 575.5 bits (1482), Expect = 1.4e-160
Identity = 290/327 (88.69%), Postives = 306/327 (93.58%), Query Frame = 0


Query: 1   MAALSRGLISRFRLLSINSGASPTVTSSSSSSLA--NPSCHYFFRTFSTESSIQAG---- 60
           M+ALSRGLISRFRLLSINS ASPT+TSSSSSS +  +PSC++FFRTFSTE SIQAG    
Sbjct: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  ----VVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
               ++EAKPGVM+PNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHLTKPEVGHFRAQGVP+KRKLREFPV+EDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMA 240
           PGQF+DVTGITRGKGFQG MK+H F G PASHGASLSHRS GSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNL+WVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300

Query: 301 APDNEDTEKLEPLVADLGEVDPFMVGE 318
           A ++EDTE LEPLVADLGEVDPFMVGE
Sbjct: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 327

[Close]

BLAST of Sed0028101 vs. ExPASy TrEMBL
Match: A0A6J1CAF7 (50S ribosomal protein L3-2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009440 PE=3 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 2.1e-156
Identity = 281/325 (86.46%), Postives = 299/325 (92.00%), Query Frame = 0


Query: 1   MAALSRGLISRFRLLSINSGASPTVTSSSSSSLANPSCHYFFRTFSTESSIQAG------ 60
           M+ALSRGL+SRFRLLSINSGAS T+  S SSS  +PSC+YFFR+FS+E  IQAG      
Sbjct: 1   MSALSRGLVSRFRLLSINSGASSTI--SPSSSRTHPSCYYFFRSFSSEDLIQAGDVSSPS 60

Query: 61  --VVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEG 120
             ++EAKPGVM PNSKRTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEKEG
Sbjct: 61  SPIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEG 120

Query: 121 ITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFVPG 180
           ITALQIGCGQKK KHLTKPE+GHFRAQGVP+KRKLREFPVS DALLPVGTTIGVRHFVPG
Sbjct: 121 ITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLREFPVSADALLPVGTTIGVRHFVPG 180

Query: 181 QFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMAGR 240
           Q+VDVTGITRGKGFQG MKRH F G PASHGASLSHRS GSTGQRDAPGKVFKGKKM GR
Sbjct: 181 QYVDVTGITRGKGFQGVMKRHGFKGMPASHGASLSHRSPGSTGQRDAPGKVFKGKKMPGR 240

Query: 241 MGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFAP 300
           MGGKQRTVKNVWVYKIDPARNLIWV+GQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA 
Sbjct: 241 MGGKQRTVKNVWVYKIDPARNLIWVKGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFAT 300

Query: 301 DNEDTEKLEPLVADLGEVDPFMVGE 318
           ++ED+EKLEPLVADLGEVDPFMVG+
Sbjct: 301 EDEDSEKLEPLVADLGEVDPFMVGD 323

[Close]

BLAST of Sed0028101 vs. ExPASy TrEMBL
Match: E5GC40 (50S ribosomal protein l3 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 4.6e-148
Identity = 268/328 (81.71%), Postives = 294/328 (89.63%), Query Frame = 0


Query: 1   MAALSRGLISRFRLLSINSGASPTVTSS--SSSSLANPSCHYFFRTFSTESSIQA----- 60
           M+ALSRGLISR RLLSINSGAS +VTSS  SSSS  N SC+YFFR FST+   QA     
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  ---GVVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
               ++EAKPG M+ NS+RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKKEKHL+KPE+GHFRAQGVP+KRKL+EFPVS+DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMA 240
           PGQ+VDVTGI+RGKGFQG MKRH F G PASHGASLSHRSGGSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLIWV+G +PGAEG+FVFIKDA YK+ +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FAPDNEDTEKLEPLVADLGEVDPFMVGE 318
           FA D EDT+KLEPLVADLGEVDPFM+G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of Sed0028101 vs. ExPASy TrEMBL
Match: A0A1S3AYD1 (50S ribosomal protein L3-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483925 PE=3 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 4.6e-148
Identity = 268/328 (81.71%), Postives = 294/328 (89.63%), Query Frame = 0


Query: 1   MAALSRGLISRFRLLSINSGASPTVTSS--SSSSLANPSCHYFFRTFSTESSIQA----- 60
           M+ALSRGLISR RLLSINSGAS +VTSS  SSSS  N SC+YFFR FST+   QA     
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  ---GVVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
               ++EAKPG M+ NS+RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKKEKHL+KPE+GHFRAQGVP+KRKL+EFPVS+DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMA 240
           PGQ+VDVTGI+RGKGFQG MKRH F G PASHGASLSHRSGGSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLIWV+G +PGAEG+FVFIKDA YK+ +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FAPDNEDTEKLEPLVADLGEVDPFMVGE 318
           FA D EDT+KLEPLVADLGEVDPFM+G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of Sed0028101 vs. TAIR 10
Match: AT3G17465.1 (ribosomal protein L3 plastid )

HSP 1 Score: 477.2 bits (1227), Expect = 9.9e-135
Identity = 242/329 (73.56%), Postives = 274/329 (83.28%), Query Frame = 0


Query: 1   MAALSRGLISRF-RLLSINSGASPTVTSSSSSSLANPSCHYFFRTFSTESSIQAG----- 60
           MAA+ RGL+SR  + LSI S     +T SSS SL + S  +  R FS+++ +  G     
Sbjct: 1   MAAVPRGLLSRINQFLSIRS-----ITPSSSESLPHCSSFFLIRRFSSDTGLMDGGGSDI 60

Query: 61  ------VVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTI 120
                 ++EAK G M+  SKRTG+IAVKCGM+ALWDKWG R+PI++LWVDDNIVSQVKT+
Sbjct: 61  IGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKTV 120

Query: 121 EKEGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRH 180
           EKEGI ALQIGCGQKK KHL+K  VGHFRAQGVP+KRKLREFPV+EDALLPVGT++GVRH
Sbjct: 121 EKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRH 180

Query: 181 FVPGQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKK 240
           FVPGQ+VDVTGITRGKGFQG MKRH F G PASHGASLSHRSGGSTGQRDAPGKVFKG+K
Sbjct: 181 FVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRK 240

Query: 241 MAGRMGGKQRTVKNVWVYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPT 300
           MAGRMG  QRTVKNVWVYKIDPARNL+WVRGQVPGAEGNFVFIKDA+ KKPD S LPFPT
Sbjct: 241 MAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFPT 300

Query: 301 YFAPDNEDTEKLEPLVADLGEVDPFMVGE 318
           Y AP++ED  +LEPLVADLGEVDPFM+ E
Sbjct: 301 YLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of Sed0028101 vs. TAIR 10
Match: AT2G43030.1 (Ribosomal protein L3 family protein )

HSP 1 Score: 156.8 bits (395), Expect = 3.0e-38
Identity = 98/255 (38.43%), Postives = 143/255 (56.08%), Query Frame = 0


Query: 22  SPTVTSSSSSSLANPSCHYFFRTFSTESSIQAGVVEAKPGVMTPNSKRTGVIAVKCGMSA 81
           +PT   + SSSL   S       F   SS++AG+               GV+  K GM +
Sbjct: 25  TPTFLPAKSSSLLIKSSPK--TRFVVSSSMEAGI---------------GVMGSKLGMMS 84

Query: 82  LWDKWGARVPITVL-WVDDNIVSQVKTIEKEGITALQIGCGQKKEKHLTKPEVGHFRAQG 141
            +++ G  VP+TV+ + + NIV+Q+KT+  +G  A+QIG  + ++K LTKPE GH +  G
Sbjct: 85  FFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAG 144

Query: 142 VPMKRKLREFPVSE-DALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQGPMKRHHFDGGP 201
               R L+EF ++  +   P    +    F  G  VDV G T GKGFQG +KRHHF  G 
Sbjct: 145 TIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQ 204

Query: 202 ASHGASLSHRSGGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKIDPARNLIWVRG 261
            +HG S SHR+ GS G    PG+V+KGKKM GRMGG +  ++ + + K+D   N++ ++G
Sbjct: 205 MTHG-SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKG 261

Query: 262 QVPGAEGNFVFIKDA 275
            +PG  GN + I  A
Sbjct: 265 ALPGKPGNLLRITPA 261

The following BLAST results are available for this feature:

BLAST of Sed0028101 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597593.1	1.5e-161	89.60	50S ribosomal protein L3-2, mitochondrial, partial [Cucurbita argyrosperma subsp...	[more]
XP_022972230.1	2.6e-161	89.88	50S ribosomal protein L3-2, chloroplastic [Cucurbita maxima]	[more]
XP_022947107.1	2.9e-160	88.69	50S ribosomal protein L3-2, chloroplastic [Cucurbita moschata]	[more]
KAG7029037.1	2.9e-160	88.69	50S ribosomal protein L3-2, chloroplastic, partial [Cucurbita argyrosperma subsp...	[more]
XP_023540684.1	1.1e-159	88.96	50S ribosomal protein L3-2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0028101 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRN8	1.4e-133	73.56	50S ribosomal protein L3-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL...	[more]
Q5NQ64	3.1e-56	50.00	50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 ...	[more]
Q5FTY3	6.8e-56	53.88	50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rpl...	[more]
Q2G8Y0	8.9e-56	52.43	50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain ATCC 700278 ...	[more]
Q11HQ2	9.9e-55	49.17	50S ribosomal protein L3 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplC PE...	[more]

BLAST of Sed0028101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7Y9	1.3e-161	89.88	50S ribosomal protein L3-2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1G5I5	1.4e-160	88.69	50S ribosomal protein L3-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1CAF7	2.1e-156	86.46	50S ribosomal protein L3-2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1...	[more]
E5GC40	4.6e-148	81.71	50S ribosomal protein l3 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3AYD1	4.6e-148	81.71	50S ribosomal protein L3-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348392...	[more]

BLAST of Sed0028101 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17465.1	9.9e-135	73.56	ribosomal protein L3 plastid	[more]
AT2G43030.1	3.0e-38	38.43	Ribosomal protein L3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 197..263 e-value: 8.0E-17 score: 63.3
None	No IPR available	GENE3D	3.30.160.810		coord: 101..164 e-value: 3.7E-23 score: 83.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..231
None	No IPR available	PANTHER	PTHR11229:SF15	BNAA01G27990D PROTEIN	coord: 1..262
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 167..250 e-value: 1.0E-16 score: 60.9
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 71..261 e-value: 4.8E-71 score: 236.7
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 1..262
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 69..275 score: 30.805336
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 169..192
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 63..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028101.1	Sed0028101.1	mRNA
Sed0028101.2	Sed0028101.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome