Sed0028077 (gene) Chayote v1

Overview


Name	Sed0028077
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ubiquitin
Location	LG01: 5651913 .. 5654824 (+)
RNA-Seq Expression	Sed0028077
Synteny	Sed0028077

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATAATAGCAGACATTTAGCCCAATTTTGGTTTGTTCAAGTTTTGCTTAATTTTCCATCACTCGCTCTGTAACTGAGAAATTGGGAAGAATCAGCGATGCAGATCTTCGTCAAAACCCTAACTGGTAAGACGATCACGCTCGAGGTCGAGAGCAGTGACACCATTGACAATGTCAAAGCCAAGATCCAGGTCTTTATTTCCTTTTCAATGAACTCATTTTTGCCGCAACTTCCTGAGATTTCCATTCATGCAAACAAGATTTTGCCGTCTTAGGTTTCTTTGATTCAATTTTGGTTCTGCTTTTCCAGTGGTTGTTGTTTCTAGCCTTTGATTCTTGTTTGTTCAATCGGAGATTCCTTCGCCTTTCGGAAGTTGTTTCTTCTGTTTATCTTTGTTTTCGTTGCGAGGAGATGTTATGGCCACTCTGGTTTTTGATTAATTCTCACTATTATGCGTTTTTTTTTCCCGAATTTTGTGTCATTGCATGGACCGATGTGAAGAAGATTAATTAATTGGTGTTTATTAGCTCCTTTTGGTGTTTAAAATTATATTTTGGTCTCTGAGTTTATCATATTAGCTTCTTCCATGGTTTGATTTTGTTTTTTTTTTTTGTTGTATGTTTATATTCTTGCTAAGTCACTTTGCCTACAAAAAATATCTGCAGGCTGTTATGGTCCCAATAAATTGTTACAGGATTTTGATTTCACGGTAGTTTTTTTAGTCATATTTTGAATGAAATTTCGTGTTCCTGATCGTGTCAATTGGGGAGAATATACGAAATGGTTTATTTGGGTTTGTTTATGTGTAGGATAAGGAAGGTATTCCACCTGATCAGCAGAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGGCGAACACTTGCAGATTATAACATCCAAAAGGAATCAACCCTTCACCTGGTCTTGAGGCTCAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACTGGGAAGGAAATTGAGATTGATATTGAGCCAAACGACACGATTGATCGTATCAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGTCTGCATTTATCTTGTTCTCCAATTTACTTGAATTACAATGATTCATTCTTTCTATTAGCATTTGTATGGTCCGGATAACTTGTTTAATCTCCCTCAAGTACATCAGTATGCACTGCTCTAAAAAAAATAATTTGGTGTGGAGCCTTCATAGTTCATTCTTGGTACAGGGTTCATTCTTCTTCTTGGAATGAAACTAACTATAGAGGTAGATGAGTTTTTTTTATTCCAGCAATGGATATAATGCTTGAAATTTTATATTAGAAGTTTCTAGATATTGCACATTTGTTGAGCATTTAACAAATAACAAGTCCTGTAACTATTTTTATGTATATCTTATTCATATTTCAGATATTTGCTTTTACATTAAGTATGAACCTAAAAATATAGGATTTAGAACACTCAGCAAAGTAATGGCTTATACAGAACTTTTAAATTTCTTCAAAACGACATAAGAATAGAATTTCAAATCAAATGTGCTCCTTTAAAATAGTGTTATCCAATGGATCTGTTGATTCAGAACCGAGATATAGATAGTAGAAAATGTTGTTATTTTTTATTTTTTGCAAGTTTCAAATACTTGAAAAACGTAATCCATAGCTCACCTTGAAGTATCTGAATTTTAAACGTAAGAATAATGTCTGAAGGTCTAATGTGCTTGAGTTCATGATGATTTTTATACTTAGTGCTCAAAAGGACAATAAAAAACCAAAAGGTTGTGGAAATCCATAGTGGCCATCTAGAAATTAATTTCCTACGGATTTCCTTATAATCCAAATGTTGTAGGGTCAGACGTAATATTCGGTGAGAATAGTCGAGATGCGCACAAACTAGTCTGGATACTTATGACCTACGTTACTGAAGTTAGAAGTGTCCATGATTTTTAACCACTGGATTGGTCTGGTGGTTTGGTGTTAAAACTGTCAAGTATATCAAGATACTGAGAACTAGCGGGCCAACATTCTGAGTTGCGTCGAAATTCTTTGTTTCAATTTCTTTTGGTCATCTAGGAACCTTGAAGGAGATCTATTATTTGTGTCGATCTATCTAAAAGAAATGAGTTTAATCCATTGTGTCCACCTACTTAAAAGTAGGATTTAATGACATACGTGTTCCCTATCATCTAAATGTAGTAGGTTAGATGGTGCTCCTGTGGGTTGAAGTCCATATAAACTAACACAGACACTCACCGATATCAGGAATAAAAGGGGGGTTAAGATAATTTGTTATTGCTTATGGCACTTGATGCACTTCCTAGTGATAATAAGTAGAGTCTTACTCTGGTTTTTGCAGGCTCATTTATGCCGGCAAACAGCTTGGAGACGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTCGCCCTTAGGGGTGGTGGTTTGTAAAAGCATTTATCACCTCTTGAAATTCTAACTTTTCAGTTCTATTTTTGGTGGTGCTTGATGAATGCATGAAATCAAATATTGGGCCTAAACTTAACTTTGATCCATTACTCTGTAATAGAGATCTCGCCTGTGCATCTCCATATCTTTTCAAGTTCAACATCAAACCATTTGGTCTGCGTGGAACTAGTTTGTAAAATTTAGTCCCAAAGTTTATCAATTTTTATTGGGGAATGGAGCTTAATTGTTCTTATGGTTTGATTTCATTTTTCTGGTTCCTCTCCTGTCCTATGACTAGGGCTGTATTGCAGGCAGAGAAGCGTTTGGACATACTTGTTAAGGTCCATTTCCTACCCTTCTAAATAGTTGAGCTATACGTAAGTTGATCAAGTACTCGTCATTATTAACTTTTTTAATAAATAAATAGTTTTTTTTTCTTCA

mRNA sequence

CAAATAATAGCAGACATTTAGCCCAATTTTGGTTTGTTCAAGTTTTGCTTAATTTTCCATCACTCGCTCTGTAACTGAGAAATTGGGAAGAATCAGCGATGCAGATCTTCGTCAAAACCCTAACTGGTAAGACGATCACGCTCGAGGTCGAGAGCAGTGACACCATTGACAATGTCAAAGCCAAGATCCAGGATAAGGAAGGTATTCCACCTGATCAGCAGAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGGCGAACACTTGCAGATTATAACATCCAAAAGGAATCAACCCTTCACCTGGTCTTGAGGCTCAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACTGGGAAGGAAATTGAGATTGATATTGAGCCAAACGACACGATTGATCGTATCAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGCAAACAGCTTGGAGACGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTCGCCCTTAGGGGTGGTGGTTTGTAAAAGCATTTATCACCTCTTGAAATTCTAACTTTTCAGTTCTATTTTTGGTGGTGCTTGATGAATGCATGAAATCAAATATTGGGCCTAAACTTAACTTTGATCCATTACTCTGTAATAGAGATCTCGCCTGTGCATCTCCATATCTTTTCAAGTTCAACATCAAACCATTTGGTCTGCGTGGAACTAGTTTGTAAAATTTAGTCCCAAAGTTTATCAATTTTTATTGGGGAATGGAGCTTAATTGTTCTTATGGTTTGATTTCATTTTTCTGGTTCCTCTCCTGTCCTATGACTAGGGCTGTATTGCAGGCAGAGAAGCGTTTGGACATACTTGTTAAGGTCCATTTCCTACCCTTCTAAATAGTTGAGCTATACGTAAGTTGATCAAGTACTCGTCATTATTAACTTTTTTAATAAATAAATAGTTTTTTTTTCTTCA

Coding sequence (CDS)

ATGCAGATCTTCGTCAAAACCCTAACTGGTAAGACGATCACGCTCGAGGTCGAGAGCAGTGACACCATTGACAATGTCAAAGCCAAGATCCAGGATAAGGAAGGTATTCCACCTGATCAGCAGAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGGCGAACACTTGCAGATTATAACATCCAAAAGGAATCAACCCTTCACCTGGTCTTGAGGCTCAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACTGGGAAGGAAATTGAGATTGATATTGAGCCAAACGACACGATTGATCGTATCAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGCAAACAGCTTGGAGACGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTCGCCCTTAGGGGTGGTGGTTTGTAA

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL

Homology

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BLAST of Sed0028077 vs. NCBI nr
Match: KAF7139896.1 (hypothetical protein RHSIM_Rhsim06G0241500 [Rhododendron simsii])

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-77
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL 154

[Close]

BLAST of Sed0028077 vs. NCBI nr
Match: XP_008226114.1 (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Prunus mume] >XP_021828548.1 ubiquitin-NEDD8-like protein RUB2 [Prunus avium] >CAB4277035.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-77
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGNL 154

[Close]

BLAST of Sed0028077 vs. NCBI nr
Match: XP_007202716.1 (ubiquitin-NEDD8-like protein RUB2 [Prunus persica] >XP_008241145.1 PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Prunus mume] >XP_021804799.1 ubiquitin-NEDD8-like protein RUB2 [Prunus avium] >XP_034224808.1 ubiquitin-NEDD8-like protein RUB2 [Prunus dulcis] >CAB4286945.1 unnamed protein product [Prunus armeniaca] >ONH95703.1 hypothetical protein PRUPE_7G086300 [Prunus persica] >CAB4317307.1 unnamed protein product [Prunus armeniaca] >VVA15290.1 PREDICTED: polyubiquitin [Prunus dulcis])

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-77
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGSL 154

[Close]

BLAST of Sed0028077 vs. NCBI nr
Match: XP_012847234.1 (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Erythranthe guttata] >EYU29189.1 hypothetical protein MIMGU_mgv1a015494mg [Erythranthe guttata])

HSP 1 Score: 297.0 bits (759), Expect = 9.6e-77
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL 155
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGG+
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGI 154

[Close]

BLAST of Sed0028077 vs. NCBI nr
Match: XP_010518981.1 (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Tarenaya hassleriana])

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-76
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

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BLAST of Sed0028077 vs. ExPASy Swiss-Prot
Match: Q9SHE7 (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 SV=3)

HSP 1 Score: 292.0 bits (746), Expect = 4.0e-78
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]

BLAST of Sed0028077 vs. ExPASy Swiss-Prot
Match: P0C030 (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2)

HSP 1 Score: 292.0 bits (746), Expect = 4.0e-78
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]

BLAST of Sed0028077 vs. ExPASy Swiss-Prot
Match: P0C031 (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB2 PE=2 SV=2)

HSP 1 Score: 292.0 bits (746), Expect = 4.0e-78
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]

BLAST of Sed0028077 vs. ExPASy Swiss-Prot
Match: P0C073 (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE=2 SV=2)

HSP 1 Score: 291.6 bits (745), Expect = 5.3e-78
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]

BLAST of Sed0028077 vs. ExPASy Swiss-Prot
Match: Q8RUC6 (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=1 SV=3)

HSP 1 Score: 288.9 bits (738), Expect = 3.4e-77
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQL DDKTAKDY IEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 152

[Close]

BLAST of Sed0028077 vs. ExPASy TrEMBL
Match: M5WAU2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G086300 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.7e-77
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGSL 154

[Close]

BLAST of Sed0028077 vs. ExPASy TrEMBL
Match: A0A6J5XYH7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44734 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.7e-77
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGSL 154

[Close]

BLAST of Sed0028077 vs. ExPASy TrEMBL
Match: A0A5E4EJU1 (PREDICTED: polyubiquitin OS=Prunus dulcis OX=3755 GN=ALMOND_2B000594 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.7e-77
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGSL 154

[Close]

BLAST of Sed0028077 vs. ExPASy TrEMBL
Match: A0A6P5TLR1 (ubiquitin-NEDD8-like protein RUB2 OS=Prunus avium OX=42229 GN=LOC110768968 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.7e-77
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGNL 154

[Close]

BLAST of Sed0028077 vs. ExPASy TrEMBL
Match: A0A6P5RPC6 (ubiquitin-NEDD8-like protein RUB2 OS=Prunus avium OX=42229 GN=LOC110749083 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.7e-77
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGSL 154

[Close]

BLAST of Sed0028077 vs. TAIR 10
Match: AT1G31340.1 (related to ubiquitin 1 )

HSP 1 Score: 292.0 bits (746), Expect = 2.9e-79
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]

BLAST of Sed0028077 vs. TAIR 10
Match: AT2G35635.1 (ubiquitin 7 )

HSP 1 Score: 288.9 bits (738), Expect = 2.4e-78
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQL DDKTAKDY IEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 152

[Close]

BLAST of Sed0028077 vs. TAIR 10
Match: AT4G05320.2 (polyubiquitin 10 )

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-64
Identity = 123/152 (80.92%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           +AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152

[Close]

BLAST of Sed0028077 vs. TAIR 10
Match: AT4G02890.1 (Ubiquitin family protein )

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-64
Identity = 123/152 (80.92%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           +AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152

[Close]

BLAST of Sed0028077 vs. TAIR 10
Match: AT4G05050.1 (ubiquitin 11 )

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-64
Identity = 123/152 (80.92%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           +AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152

The following BLAST results are available for this feature:

BLAST of Sed0028077 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7139896.1	5.6e-77	99.35	hypothetical protein RHSIM_Rhsim06G0241500 [Rhododendron simsii]	[more]
XP_008226114.1	5.6e-77	99.35	PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Prunus mume] >XP_021828548.1 ubiqu...	[more]
XP_007202716.1	5.6e-77	99.35	ubiquitin-NEDD8-like protein RUB2 [Prunus persica] >XP_008241145.1 PREDICTED: ub...	[more]
XP_012847234.1	9.6e-77	98.70	PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Erythranthe guttata] >EYU29189.1 h...	[more]
XP_010518981.1	1.6e-76	99.35	PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Tarenaya hassleriana]	[more]

BLAST of Sed0028077 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE7	4.0e-78	98.68	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 S...	[more]
P0C030	4.0e-78	98.68	Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RU...	[more]
P0C031	4.0e-78	98.68	Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RU...	[more]
P0C073	5.3e-78	98.03	Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE...	[more]
Q8RUC6	3.4e-77	98.03	Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=1 S...	[more]

BLAST of Sed0028077 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5WAU2	2.7e-77	99.35	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G086300 PE=4 SV=1	[more]
A0A6J5XYH7	2.7e-77	99.35	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44734 PE=4 S...	[more]
A0A5E4EJU1	2.7e-77	99.35	PREDICTED: polyubiquitin OS=Prunus dulcis OX=3755 GN=ALMOND_2B000594 PE=4 SV=1	[more]
A0A6P5TLR1	2.7e-77	99.35	ubiquitin-NEDD8-like protein RUB2 OS=Prunus avium OX=42229 GN=LOC110768968 PE=4 ...	[more]
A0A6P5RPC6	2.7e-77	99.35	ubiquitin-NEDD8-like protein RUB2 OS=Prunus avium OX=42229 GN=LOC110749083 PE=4 ...	[more]

BLAST of Sed0028077 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31340.1	2.9e-79	98.68	related to ubiquitin 1	[more]
AT2G35635.1	2.4e-78	98.03	ubiquitin 7	[more]
AT4G05320.2	2.6e-64	80.92	polyubiquitin 10	[more]
AT4G02890.1	2.6e-64	80.92	Ubiquitin family protein	[more]
AT4G05050.1	2.6e-64	80.92	ubiquitin 11	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019956	Ubiquitin domain	PRINTS	PR00348	UBIQUITIN	coord: 53..74 score: 91.18 coord: 11..31 score: 85.2 coord: 32..52 score: 95.05
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 77..148 e-value: 2.7E-27 score: 106.7 coord: 1..72 e-value: 3.0E-35 score: 133.1
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 3..74 e-value: 5.8E-34 score: 115.7 coord: 79..150 e-value: 1.2E-27 score: 95.4
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 77..152 score: 26.314779
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..76 score: 30.452106
None	No IPR available	GENE3D	3.10.20.90		coord: 79..154 e-value: 1.6E-34 score: 119.8 coord: 1..78 e-value: 7.7E-47 score: 159.5
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..152
None	No IPR available	PANTHER	PTHR10666:SF364	SUBFAMILY NOT NAMED	coord: 1..152
None	No IPR available	CDD	cd01803	Ubl_ubiquitin	coord: 1..76 e-value: 2.54948E-51 score: 156.45
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 103..128
IPR038738	Nedd8-like ubiquitin	CDD	cd01806	Ubl_NEDD8	coord: 79..152 e-value: 2.41972E-47 score: 145.994
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..76
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 79..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028077.1	Sed0028077.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019941	modification-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0031386	protein tag
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0005515	protein binding