Sed0028060 (gene) Chayote v1

Overview


Name	Sed0028060
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L32, putative
Location	LG10: 1049954 .. 1052073 (+)
RNA-Seq Expression	Sed0028060
Synteny	Sed0028060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAATACACCTTTTGGAGTTCGGCGGGTTCAACCTTCAAATTTCGATTGCCGGTATCAATCTCTATCTCTCTACTGTTCGTGCAATTCTATCGTTAATTCTTTACAAATTCAATATATTTTCGCAAATTTAGGTAGCTTGTTTCTGTTTTATATGTGATTTTAGTTAACAGGTGATTCATGTTCTGCTGTTTTTGTATTTGTTGAATCTACATTCTTGCAATCGGAGCTATGGAACTGAGAGATATCCTTGTTGTAGACTTTGTAGGATCTTGGAAGATATGGCGGTGCCGTTGCTTACGAAGAAGATCGTTAAGAAGAGAGTTAAGCAGTTCAAGAGGCCTCAATGCGACCGCAAGATCTGTGTTAAAGTATGTGTGTGAATTTTTGTTAGTTTTTTACTTCGTATGACTAGTGTTTCTGCTTGACTGTGAATTTGTATTAATTTATGTGCTTATTATGCATGCGAGAATTTAGCATAATTTGTAGGAATTGAATCCGTATGATTTATCTGGAGATTTAGTAAGTGTTTAGTGGATCTGTAGGTTATTTGGTGTTCTGGAATGTCTTAACAAGTGCTAGTTTTGTATGATAAGAACCTGCTACAGTAATGATTATATGCAACCAGTTGCTTGATTTTTGAATGAAAAATTCAGAAAGGCTTTCTCATTCACCACAAATCAGCATGTTTTTTCACCCGTAGCAATCTCCTAAACAACTGTTGATTTAGTTTGTCAGTAGATTATTTAGTGTTCAGTGGATCTGTAGATGATTCATTTGGTGTTACAGTCAATTCATCTAGTTTTGGAATGTTATGAGATTTTTACAATGAGTATTTGTGACCCAACAACTGCTAATTTTTTATCATGATAAACTGAACAGTGATGTTGTTTACCATGGAAAATATTGTTGCTACTAACTGTTCTTTGCCTTTTGGAATGACTGATTCATCTCATGCACTACGAATCACGGAATCAGCATGTTGTTCACTTGTAGCAATCTTCTGCATTAGATGTTTTTTCAATTGCCACGAGTTGCTATTTGCTTATCAATTGAGTATGTTAGGCATCTAAGGGCAGCAAAAAGAAAAAGAAATTTGTTATATTTTCACCTTATTTTGGGATGATTGGTTATTTGATATCTATCTCTTTCTTTCATTTATATAGTTCTTTTGTAATTATAAAGTTCACTGCTGAAATCCAGGTCATTTTGTTTGAAAGGCGATGTTTTTTTAGTAACTAATTGAACCTAAAATGTTTGAAAGGCAAGTTTTTTTTTTGAGTACCTAATTGAACCTAAAATGTTTGAAAGGCAAGGTTGGAATCTAATATGAGGCCTGATTATCTATCGTCAGTATGTTTTGAAAATCATTGTATAGTTTACTTATGGGCTTTTGTTCCTGTAACCTTGCTTATACTTCTCTATCACTTGCTGTGCTTGAGGCATCTGGTGTATTTTGTGCATTATGTGTAATGCATCTACTTCGTGTTTGGTCTAATACTCAATGATGATCTGTTAATTAACCAAGTGATTGGTATTGGTCTAATGTATATCCACAGACAAACTGGCGTAGACCAAAGGGTATTGACTCCCGAGTCCGAAGAAAGTTTAAAGGATGCACTTTGATGCCGAATATTGGGTACGGTACAGACAAGAAGACCCGTCATTATCTTCCTAATGGATTCAAGAAGTTTGTCGCGCACAACGTCAAGGAGCTTGAACTGTTGATGATGCACAATAGGCAAGCACTGATCTCTGTACATTTCATTTAACTTTATAATTAACTCTTTCTAATCCATGGCTGATTAATTTCTTATTGTTTTATTTTAGGACTTATTGTGCTGAGATTGCACATGATGTGTCCACACAAAAGAGGAAGGAGATTGTGGAGAGAGCTGCCCAACTCGATGTAGTTGTCACCAACAAGCTTGCTAGGTTGCGCAGCCAGGAGGATGAATGAACCACCCTCATATATTCCTTTTTTTTGTTTTATTGGTGTTGTTTTAAAAAAAAAAAAATTATTTAACATTGCTGCAGCTTTGGGTGCTGCATTTCTATTCTATCTGATGATGTCTATTATTTGACTAAGATTTCTAATTTTATTGTCATGTTTGGTTATTA

mRNA sequence

AGCAATACACCTTTTGGAGTTCGGCGGGTTCAACCTTCAAATTTCGATTGCCGACTTTGTAGGATCTTGGAAGATATGGCGGTGCCGTTGCTTACGAAGAAGATCGTTAAGAAGAGAGTTAAGCAGTTCAAGAGGCCTCAATGCGACCGCAAGATCTGTGTTAAAACAAACTGGCGTAGACCAAAGGGTATTGACTCCCGAGTCCGAAGAAAGTTTAAAGGATGCACTTTGATGCCGAATATTGGGTACGGTACAGACAAGAAGACCCGTCATTATCTTCCTAATGGATTCAAGAAGTTTGTCGCGCACAACGTCAAGGAGCTTGAACTGTTGATGATGCACAATAGGACTTATTGTGCTGAGATTGCACATGATGTGTCCACACAAAAGAGGAAGGAGATTGTGGAGAGAGCTGCCCAACTCGATGTAGTTGTCACCAACAAGCTTGCTAGGTTGCGCAGCCAGGAGGATGAATGAACCACCCTCATATATTCCTTTTTTTTGTTTTATTGGTGTTGTTTTAAAAAAAAAAAAATTATTTAACATTGCTGCAGCTTTGGGTGCTGCATTTCTATTCTATCTGATGATGTCTATTATTTGACTAAGATTTCTAATTTTATTGTCATGTTTGGTTATTA

Coding sequence (CDS)

ATGGCGGTGCCGTTGCTTACGAAGAAGATCGTTAAGAAGAGAGTTAAGCAGTTCAAGAGGCCTCAATGCGACCGCAAGATCTGTGTTAAAACAAACTGGCGTAGACCAAAGGGTATTGACTCCCGAGTCCGAAGAAAGTTTAAAGGATGCACTTTGATGCCGAATATTGGGTACGGTACAGACAAGAAGACCCGTCATTATCTTCCTAATGGATTCAAGAAGTTTGTCGCGCACAACGTCAAGGAGCTTGAACTGTTGATGATGCACAATAGGACTTATTGTGCTGAGATTGCACATGATGTGTCCACACAAAAGAGGAAGGAGATTGTGGAGAGAGCTGCCCAACTCGATGTAGTTGTCACCAACAAGCTTGCTAGGTTGCGCAGCCAGGAGGATGAATGA

Protein sequence

MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVVTNKLARLRSQEDE

Homology

[Close]

BLAST of Sed0028060 vs. NCBI nr
Match: XP_022925632.1 (60S ribosomal protein L32-1-like isoform X14 [Cucurbita moschata] >XP_022925633.1 60S ribosomal protein L32-1-like isoform X14 [Cucurbita moschata] >XP_022925634.1 60S ribosomal protein L32-1-like isoform X14 [Cucurbita moschata] >XP_022925635.1 60S ribosomal protein L32-1-like isoform X14 [Cucurbita moschata] >XP_022978736.1 60S ribosomal protein L32-1-like isoform X2 [Cucurbita maxima] >XP_022978737.1 60S ribosomal protein L32-1-like isoform X2 [Cucurbita maxima] >XP_023543823.1 60S ribosomal protein L32-1-like [Cucurbita pepo subsp. pepo] >XP_023543824.1 60S ribosomal protein L32-1-like [Cucurbita pepo subsp. pepo] >KAF3435907.1 hypothetical protein FNV43_RR22999 [Rhamnella rubrinervis] >KAG6581400.1 60S ribosomal protein L32-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.1 bits (658), Expect = 4.3e-65
Identity = 129/133 (96.99%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQ DRKI VKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HNVKELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. NCBI nr
Match: XP_022142034.1 (60S ribosomal protein L32-1-like [Momordica charantia] >XP_022142035.1 60S ribosomal protein L32-1-like [Momordica charantia])

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65
Identity = 128/133 (96.24%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQ DRKI VKTNWRRPKGIDSRVRRKFKGCTLMPN+GYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNVGYGT 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HNVKELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. NCBI nr
Match: XP_038883938.1 (60S ribosomal protein L32-1-like [Benincasa hispida] >XP_038883939.1 60S ribosomal protein L32-1-like [Benincasa hispida] >XP_038883940.1 60S ribosomal protein L32-1-like [Benincasa hispida] >XP_038883941.1 60S ribosomal protein L32-1-like [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 9.5e-65
Identity = 128/133 (96.24%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQ DRKI VKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HNVKEL+LLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELDLLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. NCBI nr
Match: XP_022926464.1 (60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_022926465.1 60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_023003539.1 60S ribosomal protein L32-1-like [Cucurbita maxima] >XP_023003541.1 60S ribosomal protein L32-1-like [Cucurbita maxima] >XP_023517265.1 60S ribosomal protein L32-1-like [Cucurbita pepo subsp. pepo] >XP_023517267.1 60S ribosomal protein L32-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-64
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQ DRKI VKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HNV ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. NCBI nr
Match: XP_008439684.1 (PREDICTED: 60S ribosomal protein L32-1-like [Cucumis melo] >XP_008439685.1 PREDICTED: 60S ribosomal protein L32-1-like [Cucumis melo] >TYK13251.1 60S ribosomal protein L32-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-64
Identity = 128/133 (96.24%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQ DRKI VKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HNVKELELLMMHNRTYCAEIAH+VST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. ExPASy Swiss-Prot
Match: P49211 (60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 112/133 (84.21%), Postives = 122/133 (91.73%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQ DR+I VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HN  ELELLMMHNRTYCAEIAH+VST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. ExPASy Swiss-Prot
Match: Q9FHG2 (60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 6.8e-58
Identity = 109/133 (81.95%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQ DR+I VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+ HN  ELELLMMHNRTYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. ExPASy Swiss-Prot
Match: E2RKA8 (60S ribosomal protein L32 OS=Canis lupus familiaris OX=9615 GN=RPL32 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.1e-43
Identity = 86/130 (66.15%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 4   PLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR K+F R Q DR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+ HNVKELE+L+M N++YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]

BLAST of Sed0028060 vs. ExPASy Swiss-Prot
Match: P62910 (60S ribosomal protein L32 OS=Homo sapiens OX=9606 GN=RPL32 PE=1 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 2.1e-43
Identity = 86/130 (66.15%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 4   PLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR K+F R Q DR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+ HNVKELE+L+M N++YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]

BLAST of Sed0028060 vs. ExPASy Swiss-Prot
Match: Q76KA3 (60S ribosomal protein L32 OS=Macaca fascicularis OX=9541 GN=RPL32 PE=2 SV=3)

HSP 1 Score: 176.4 bits (446), Expect = 2.1e-43
Identity = 86/130 (66.15%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 4   PLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR K+F R Q DR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+ HNVKELE+L+M N++YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]

BLAST of Sed0028060 vs. ExPASy TrEMBL
Match: A0A6J1INV4 (60S ribosomal protein L32-1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478603 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65
Identity = 129/133 (96.99%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQ DRKI VKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HNVKELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. ExPASy TrEMBL
Match: A0A6J1EC74 (60S ribosomal protein L32-1-like isoform X14 OS=Cucurbita moschata OX=3662 GN=LOC111432992 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65
Identity = 129/133 (96.99%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQ DRKI VKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HNVKELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. ExPASy TrEMBL
Match: A0A6J1CJS6 (60S ribosomal protein L32-1-like OS=Momordica charantia OX=3673 GN=LOC111012261 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 128/133 (96.24%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQ DRKI VKTNWRRPKGIDSRVRRKFKGCTLMPN+GYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNVGYGT 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HNVKELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. ExPASy TrEMBL
Match: A0A2N9IE63 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50447 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQCDRKI VKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HNV ELELLMMHNRTYCAEIAH++ST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNISTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. ExPASy TrEMBL
Match: A0A6J1KPI9 (60S ribosomal protein L32-1-like OS=Cucurbita maxima OX=3661 GN=LOC111497112 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.8e-65
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQ DRKI VKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HNV ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. TAIR 10
Match: AT4G18100.1 (Ribosomal protein L32e )

HSP 1 Score: 227.3 bits (578), Expect = 7.5e-60
Identity = 112/133 (84.21%), Postives = 122/133 (91.73%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQ DR+I VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFV HN  ELELLMMHNRTYCAEIAH+VST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. TAIR 10
Match: AT5G46430.1 (Ribosomal protein L32e )

HSP 1 Score: 224.6 bits (571), Expect = 4.9e-59
Identity = 109/133 (81.95%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQ DR+I VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+ HN  ELELLMMHNRTYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

[Close]

BLAST of Sed0028060 vs. TAIR 10
Match: AT5G46430.2 (Ribosomal protein L32e )

HSP 1 Score: 224.6 bits (571), Expect = 4.9e-59
Identity = 109/133 (81.95%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRVKQFKRPQCDRKICVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQ DR+I VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVAHNVKELELLMMHNRTYCAEIAHDVSTQKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+ HN  ELELLMMHNRTYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

The following BLAST results are available for this feature:

BLAST of Sed0028060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925632.1	4.3e-65	96.99	60S ribosomal protein L32-1-like isoform X14 [Cucurbita moschata] >XP_022925633....	[more]
XP_022142034.1	5.6e-65	96.24	60S ribosomal protein L32-1-like [Momordica charantia] >XP_022142035.1 60S ribos...	[more]
XP_038883938.1	9.5e-65	96.24	60S ribosomal protein L32-1-like [Benincasa hispida] >XP_038883939.1 60S ribosom...	[more]
XP_022926464.1	1.6e-64	96.24	60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_022926465.1 60S riboso...	[more]
XP_008439684.1	1.6e-64	96.24	PREDICTED: 60S ribosomal protein L32-1-like [Cucumis melo] >XP_008439685.1 PREDI...	[more]

BLAST of Sed0028060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49211	1.1e-58	84.21	60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2	[more]
Q9FHG2	6.8e-58	81.95	60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1	[more]
E2RKA8	2.1e-43	66.15	60S ribosomal protein L32 OS=Canis lupus familiaris OX=9615 GN=RPL32 PE=1 SV=1	[more]
P62910	2.1e-43	66.15	60S ribosomal protein L32 OS=Homo sapiens OX=9606 GN=RPL32 PE=1 SV=2	[more]
Q76KA3	2.1e-43	66.15	60S ribosomal protein L32 OS=Macaca fascicularis OX=9541 GN=RPL32 PE=2 SV=3	[more]

BLAST of Sed0028060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1INV4	2.1e-65	96.99	60S ribosomal protein L32-1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EC74	2.1e-65	96.99	60S ribosomal protein L32-1-like isoform X14 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1CJS6	2.7e-65	96.24	60S ribosomal protein L32-1-like OS=Momordica charantia OX=3673 GN=LOC111012261 ...	[more]
A0A2N9IE63	2.7e-65	95.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50447 PE=3 SV=1	[more]
A0A6J1KPI9	7.8e-65	96.24	60S ribosomal protein L32-1-like OS=Cucurbita maxima OX=3661 GN=LOC111497112 PE=...	[more]

BLAST of Sed0028060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18100.1	7.5e-60	84.21	Ribosomal protein L32e	[more]
AT5G46430.1	4.9e-59	81.95	Ribosomal protein L32e	[more]
AT5G46430.2	4.9e-59	81.95	Ribosomal protein L32e	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001515	Ribosomal protein L32e	SMART	SM01393	Ribosomal_L32e_2	coord: 15..122 e-value: 1.2E-69 score: 247.4
IPR001515	Ribosomal protein L32e	PFAM	PF01655	Ribosomal_L32e	coord: 16..122 e-value: 3.8E-47 score: 159.2
IPR001515	Ribosomal protein L32e	PANTHER	PTHR23413	60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	coord: 1..133
IPR001515	Ribosomal protein L32e	CDD	cd00513	Ribosomal_L32_L32e	coord: 16..122 e-value: 2.41229E-57 score: 171.559
None	No IPR available	PANTHER	PTHR23413:SF18	60S RIBOSOMAL PROTEIN L32-1-LIKE	coord: 1..133
IPR036351	Ribosomal protein L32e superfamily	SUPERFAMILY	52042	Ribosomal protein L32e	coord: 2..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028060.1	Sed0028060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009718	anthocyanin-containing compound biosynthetic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0047213	anthocyanidin 3-O-glucosyltransferase activity
molecular_function	GO:0080043	quercetin 3-O-glucosyltransferase activity
molecular_function	GO:0080044	quercetin 7-O-glucosyltransferase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004842	ubiquitin-protein transferase activity