Sed0028058 (gene) Chayote v1

Overview


Name	Sed0028058
Type	gene
Organism	Sechium edule (Chayote v1)
Description	C3H1-type domain-containing protein
Location	LG05: 12757246 .. 12757809 (+)
RNA-Seq Expression	Sed0028058
Synteny	Sed0028058

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCAACAAGTTCAAAAATTGACCCATCAGGTTCGTTTTATTTGACGCATCAGGATTGTTTTATTATTTATTTACCTCTCCAACCTAAATATACTAGTCTTTATAATTATTTCTCACAAAAATAATCTCCCTAATAATATATTGAAAAAAGATCCAAGTTCCCATGTAAGAAGTCATATGCTTTTAGGTTAACTTTTTAGATCACATTTTTTTTTTAAATTATTTACTTCCAATTCGTGACCTTTGATAATTTACAAACTTTAAAATTTACAAGTGTTTTAATATAAATTATAGAGTAAAGTACTTTTCTATTAAACAACGGTTTGAAATATGTGAATGTAGAGTTCGTGCCGACACCTTCAGAGCTAAGACCCCTGCAAAAAGAACTCGAGGAGAAGACGAAGAAAATCGAAGAGATGAAGAAAATGATTGAAGATACGAAAGTTTGTTTGATGGATAAGGAAATGAAGGTTTCGGAGAAAGAAATGGAAGATTTTAAGGCATTGTGTGAAAAATACAACAGCTTGAGAAAGGAATACAATGAAACATTAGCCAAATAG

mRNA sequence

ATGGATCCAACAAGTTCAAAAATTGACCCATCAGAGTTCGTGCCGACACCTTCAGAGCTAAGACCCCTGCAAAAAGAACTCGAGGAGAAGACGAAGAAAATCGAAGAGATGAAGAAAATGATTGAAGATACGAAAGTTTGTTTGATGGATAAGGAAATGAAGGTTTCGGAGAAAGAAATGGAAGATTTTAAGGCATTGTGTGAAAAATACAACAGCTTGAGAAAGGAATACAATGAAACATTAGCCAAATAG

Coding sequence (CDS)

ATGGATCCAACAAGTTCAAAAATTGACCCATCAGAGTTCGTGCCGACACCTTCAGAGCTAAGACCCCTGCAAAAAGAACTCGAGGAGAAGACGAAGAAAATCGAAGAGATGAAGAAAATGATTGAAGATACGAAAGTTTGTTTGATGGATAAGGAAATGAAGGTTTCGGAGAAAGAAATGGAAGATTTTAAGGCATTGTGTGAAAAATACAACAGCTTGAGAAAGGAATACAATGAAACATTAGCCAAATAG

Protein sequence

MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK

Homology

[Close]

BLAST of Sed0028058 vs. NCBI nr
Match: KGN48117.1 (hypothetical protein Csa_003321 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-16
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKE--MKVSEK 60
          MDP++SKIDPSEF   PSEL+ L++ELEEK KK+EEMKK IE  KVCL  K+  +K S K
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMEDFKALCEKYNSLRKEYNETLAK 84
          EME FK LC KY SLRKEYNE   K
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEK 85

[Close]

BLAST of Sed0028058 vs. NCBI nr
Match: KAG7035874.1 (hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEM 60
          MDP+SSKIDPSEF P   EL  LQKE+E KTKKI+EMKK IE  K+ L  +E K S +EM
Sbjct: 1  MDPSSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWL--EEKKASREEM 60

Query: 61 EDFKALCEKYNSLRKEYNETLAK 84
          E  K LCE++NSLRKEY ETL K
Sbjct: 61 ESLKRLCEEFNSLRKEYYETLGK 81

[Close]

BLAST of Sed0028058 vs. NCBI nr
Match: XP_022958532.1 (uncharacterized protein LOC111459736 [Cucurbita moschata])

HSP 1 Score: 73.9 bits (180), Expect = 7.1e-10
Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 12  EFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYN 71
           EF P  SEL  LQKE+E KTKKI+EMKK IE  K+ L  +E K S +EME  K LCE+YN
Sbjct: 163 EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWL--EEKKASREEMESLKRLCEEYN 222

Query: 72  SLRKEYNETLAK 84
           SLRKEY ETL K
Sbjct: 223 SLRKEYYETLGK 232

[Close]

BLAST of Sed0028058 vs. NCBI nr
Match: GFZ20708.1 (hypothetical protein Acr_28g0014130 [Actinidia rufa])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1   MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEM 60
           M+  SS + P   V   SEL  LQKE E+K +KI+++K+ I DTK+ L  K+ +V E++M
Sbjct: 40  MESCSSSLSP---VKQGSELEMLQKEHEKKMQKIQQLKQQIADTKISLERKKKEVPEEKM 99

Query: 61  EDFKALCEKYNSLRKEYNETLAK 84
           E F+AL E+YN++R EYN  LAK
Sbjct: 100 EAFRALTEQYNNMRNEYNALLAK 119

[Close]

BLAST of Sed0028058 vs. NCBI nr
Match: XP_034688913.1 (uveal autoantigen with coiled-coil domains and ankyrin repeats-like [Vitis riparia] >XP_034688914.1 uveal autoantigen with coiled-coil domains and ankyrin repeats-like [Vitis riparia] >XP_034688915.1 uveal autoantigen with coiled-coil domains and ankyrin repeats-like [Vitis riparia] >XP_034688916.1 uveal autoantigen with coiled-coil domains and ankyrin repeats-like [Vitis riparia] >XP_034688918.1 uveal autoantigen with coiled-coil domains and ankyrin repeats-like [Vitis riparia])

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 18 SELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEY 77
          SEL  LQK+ EEKT KI+E+K+ IE  K+ L  ++ ++ E++ME FK L EKYNSLR EY
Sbjct: 16 SELEMLQKQHEEKTMKIQELKRQIESVKLRLEKRKKEIPEEKMEAFKVLSEKYNSLRDEY 75

Query: 78 NETLAK 84
          N  LA+
Sbjct: 76 NALLAE 81

[Close]

BLAST of Sed0028058 vs. ExPASy TrEMBL
Match: A0A0A0KIA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434370 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKE--MKVSEK 60
          MDP++SKIDPSEF   PSEL+ L++ELEEK KK+EEMKK IE  KVCL  K+  +K S K
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMEDFKALCEKYNSLRKEYNETLAK 84
          EME FK LC KY SLRKEYNE   K
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEK 85

[Close]

BLAST of Sed0028058 vs. ExPASy TrEMBL
Match: A0A6J1H234 (uncharacterized protein LOC111459736 OS=Cucurbita moschata OX=3662 GN=LOC111459736 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-10
Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 12  EFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYN 71
           EF P  SEL  LQKE+E KTKKI+EMKK IE  K+ L  +E K S +EME  K LCE+YN
Sbjct: 163 EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWL--EEKKASREEMESLKRLCEEYN 222

Query: 72  SLRKEYNETLAK 84
           SLRKEY ETL K
Sbjct: 223 SLRKEYYETLGK 232

[Close]

BLAST of Sed0028058 vs. ExPASy TrEMBL
Match: A0A7J0HCC5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_28g0014130 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.1e-07
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1   MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEM 60
           M+  SS + P   V   SEL  LQKE E+K +KI+++K+ I DTK+ L  K+ +V E++M
Sbjct: 40  MESCSSSLSP---VKQGSELEMLQKEHEKKMQKIQQLKQQIADTKISLERKKKEVPEEKM 99

Query: 61  EDFKALCEKYNSLRKEYNETLAK 84
           E F+AL E+YN++R EYN  LAK
Sbjct: 100 EAFRALTEQYNNMRNEYNALLAK 119

[Close]

BLAST of Sed0028058 vs. ExPASy TrEMBL
Match: D7SNF6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00140 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 18 SELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEY 77
          SEL  LQK+ EEKT KI+E+K+ IE  K+ L  ++ ++ E++ME FK L EKYNSLR EY
Sbjct: 16 SELEMLQKQHEEKTMKIQELKRQIESVKLRLEKRKKEIPEEKMEAFKVLSEKYNSLRDEY 75

Query: 78 NETLAK 84
          N  LA+
Sbjct: 76 NALLAE 81

[Close]

BLAST of Sed0028058 vs. ExPASy TrEMBL
Match: A0A438KG72 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_004605 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 18  SELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEY 77
           SEL  LQK+ EEKT KI+E+K+ IE  K+ L  ++ ++ E++ME FK L EKYNSLR EY
Sbjct: 101 SELEMLQKQHEEKTMKIQELKRQIESVKLRLEKRKKEIPEEKMEAFKVLSEKYNSLRDEY 160

Query: 78  NETLAK 84
           N  LA+
Sbjct: 161 NALLAE 166

The following BLAST results are available for this feature:

BLAST of Sed0028058 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48117.1	2.3e-16	65.88	hypothetical protein Csa_003321 [Cucumis sativus]	[more]
KAG7035874.1	2.1e-14	65.06	hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022958532.1	7.1e-10	63.89	uncharacterized protein LOC111459736 [Cucurbita moschata]	[more]
GFZ20708.1	1.3e-06	48.19	hypothetical protein Acr_28g0014130 [Actinidia rufa]	[more]
XP_034688913.1	3.6e-06	54.55	uveal autoantigen with coiled-coil domains and ankyrin repeats-like [Vitis ripar...	[more]

BLAST of Sed0028058 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0028058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIA6	1.1e-16	65.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434370 PE=4 SV=1	[more]
A0A6J1H234	3.4e-10	63.89	uncharacterized protein LOC111459736 OS=Cucurbita moschata OX=3662 GN=LOC1114597...	[more]
A0A7J0HCC5	6.1e-07	48.19	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_28g0014130 PE=4 SV=1	[more]
D7SNF6	1.8e-06	54.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00140 PE=4 SV=...	[more]
A0A438KG72	1.8e-06	54.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_004605 PE=4 SV=1	[more]

BLAST of Sed0028058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028058.1	Sed0028058.1	mRNA