Sed0028052 (gene) Chayote v1

Overview


Name	Sed0028052
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LOB domain-containing protein
Location	LG08: 28698955 .. 28699600 (-)
RNA-Seq Expression	Sed0028052
Synteny	Sed0028052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTCTTCTTTCATAACTAAAATTAGTATATAATTTGTTAATTTTTTCTCTAAAACTTCTCTATTTTCTTTGTAGGAAGATGTCTTCTTCCACCTACACAAATTCCCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTTCCCGAATGCATTTTTGCCCCGTATTTTCCCCCCGAGGAGCCACAAAAGTTCACCAGTGTCCACAAGATCTTCGGCGCCAGAAACGTCGGCAAACTGCTGAACGGAGTTCAGCCACACCTGCGGGAGGATGCTGTGAGCTCACTTGCCTACGAGGCCGAGGCTAGGATAAAAGACCCTGTGTACGGTTGTGTTGGTGCCATTTCTATCCTCCAAAGTCAAGTCATAAAGCTTCAAAAAGAACTCGACGCCACCAATGCCAGCCTCATTCGGTACGCCTGCAAACTTCCCGCTCCATCCCCGTCCTCGTCGAGCCACGAGAAAAGCTCATCTACCAGCTCTAGCTATGGCCACTGCTATTCTGGCCTCTACTTTTCTCCATGGAGCAACAGCCATGGCCCTAGTGAAGATATTGATCACCATGACAAAGGAGAATACAAGTAAAATTTTCATTTGATCATCATCTTATGGGGTTCTCAATATATGTTGATATATAAGTGTG

mRNA sequence

TTTTTTCTTCTTTCATAACTAAAATTAGTATATAATTTGTTAATTTTTTCTCTAAAACTTCTCTATTTTCTTTGTAGGAAGATGTCTTCTTCCACCTACACAAATTCCCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTTCCCGAATGCATTTTTGCCCCGTATTTTCCCCCCGAGGAGCCACAAAAGTTCACCAGTGTCCACAAGATCTTCGGCGCCAGAAACGTCGGCAAACTGCTGAACGGAGTTCAGCCACACCTGCGGGAGGATGCTGTGAGCTCACTTGCCTACGAGGCCGAGGCTAGGATAAAAGACCCTGTGTACGGTTGTGTTGGTGCCATTTCTATCCTCCAAAGTCAAGTCATAAAGCTTCAAAAAGAACTCGACGCCACCAATGCCAGCCTCATTCGGTACGCCTGCAAACTTCCCGCTCCATCCCCGTCCTCGTCGAGCCACGAGAAAAGCTCATCTACCAGCTCTAGCTATGGCCACTGCTATTCTGGCCTCTACTTTTCTCCATGGAGCAACAGCCATGGCCCTAGTGAAGATATTGATCACCATGACAAAGGAGAATACAAGTAAAATTTTCATTTGATCATCATCTTATGGGGTTCTCAATATATGTTGATATATAAGTGTG

Coding sequence (CDS)

ATGTCTTCTTCCACCTACACAAATTCCCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTTCCCGAATGCATTTTTGCCCCGTATTTTCCCCCCGAGGAGCCACAAAAGTTCACCAGTGTCCACAAGATCTTCGGCGCCAGAAACGTCGGCAAACTGCTGAACGGAGTTCAGCCACACCTGCGGGAGGATGCTGTGAGCTCACTTGCCTACGAGGCCGAGGCTAGGATAAAAGACCCTGTGTACGGTTGTGTTGGTGCCATTTCTATCCTCCAAAGTCAAGTCATAAAGCTTCAAAAAGAACTCGACGCCACCAATGCCAGCCTCATTCGGTACGCCTGCAAACTTCCCGCTCCATCCCCGTCCTCGTCGAGCCACGAGAAAAGCTCATCTACCAGCTCTAGCTATGGCCACTGCTATTCTGGCCTCTACTTTTCTCCATGGAGCAACAGCCATGGCCCTAGTGAAGATATTGATCACCATGACAAAGGAGAATACAAGTAA

Protein sequence

MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPHLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYACKLPAPSPSSSSHEKSSSTSSSYGHCYSGLYFSPWSNSHGPSEDIDHHDKGEYK

Homology

[Close]

BLAST of Sed0028052 vs. NCBI nr
Match: XP_038905774.1 (LOB domain-containing protein 25-like [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 4.0e-68
Identity = 143/180 (79.44%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQP 60
           MSSSTY+NSPCAACKFLRRKCLP+C+FAPYFPPEEPQKF +VHKIFGA NV KLLN VQP
Sbjct: 16  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 75

Query: 61  HLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYAC-KLPA 120
           H REDAV+SLAYEAEAR+KDPVYGCVGAISILQ QVIKLQKELDATNA LIRYAC ++PA
Sbjct: 76  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 135

Query: 121 PSPSSS----------SHEKSSSTSSSYGHCYSGLYFSPWS-NSHGPSEDIDHHDKGEYK 169
           PSPSSS          SHE SSST SSYGH YSGLYFSPWS N++GP    D HDKGEYK
Sbjct: 136 PSPSSSSQYARKSSSTSHEASSST-SSYGHYYSGLYFSPWSNNNNGPCG--DGHDKGEYK 192

[Close]

BLAST of Sed0028052 vs. NCBI nr
Match: XP_011652293.1 (LOB domain-containing protein 25 isoform X2 [Cucumis sativus] >KAE8651263.1 hypothetical protein Csa_001141 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-67
Identity = 142/180 (78.89%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQP 60
           MSSSTY+NSPCAACKFLRRKCLP+C+FAPYFPPEEPQKF +VHKIFGA NV KLLN VQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYAC-KLPA 120
           H REDAV+SLAYEAEAR+KDPVYGCVGAISILQ QVIKLQKELDATNA LIRYAC ++PA
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120

Query: 121 PSPSSS----------SHEKSSSTSSSYGHCYSGLYFSPWS-NSHGPSEDIDHHDKGEYK 169
           PSPSSS          SHE SSST SSYGH Y+GLYFSPWS N++GP    D HDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSST-SSYGHYYTGLYFSPWSNNNNGPCG--DGHDKGEYK 177

[Close]

BLAST of Sed0028052 vs. NCBI nr
Match: XP_004141196.1 (LOB domain-containing protein 25 isoform X1 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-67
Identity = 142/180 (78.89%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQP 60
           MSSSTY+NSPCAACKFLRRKCLP+C+FAPYFPPEEPQKF +VHKIFGA NV KLLN VQP
Sbjct: 19  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 78

Query: 61  HLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYAC-KLPA 120
           H REDAV+SLAYEAEAR+KDPVYGCVGAISILQ QVIKLQKELDATNA LIRYAC ++PA
Sbjct: 79  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 138

Query: 121 PSPSSS----------SHEKSSSTSSSYGHCYSGLYFSPWS-NSHGPSEDIDHHDKGEYK 169
           PSPSSS          SHE SSST SSYGH Y+GLYFSPWS N++GP    D HDKGEYK
Sbjct: 139 PSPSSSSQYARRSSSTSHEGSSST-SSYGHYYTGLYFSPWSNNNNGPCG--DGHDKGEYK 195

[Close]

BLAST of Sed0028052 vs. NCBI nr
Match: XP_008443563.1 (PREDICTED: LOB domain-containing protein 25-like [Cucumis melo] >KAA0053633.1 LOB domain-containing protein 25-like [Cucumis melo var. makuwa] >TYK00802.1 LOB domain-containing protein 25-like [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-67
Identity = 142/180 (78.89%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQP 60
           MSSSTY+NSPCAACKFLRRKCLP+C+FAPYFPPEEPQKF +VHKIFGA NV KLLN VQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYAC-KLPA 120
           H REDAV+SLAYEAEAR+KDPVYGCVGAISILQ QVIKLQKELDATNA LIRYAC ++PA
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 121 PSPSSS----------SHEKSSSTSSSYGHCYSGLYFSPWS-NSHGPSEDIDHHDKGEYK 169
           PSPSSS          SHE SSST SSYGH Y+GLYFSPWS N++GP    D HDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSST-SSYGHYYTGLYFSPWSNNNNGPCG--DGHDKGEYK 177

[Close]

BLAST of Sed0028052 vs. NCBI nr
Match: XP_022152200.1 (LOB domain-containing protein 25-like [Momordica charantia])

HSP 1 Score: 264.6 bits (675), Expect = 5.7e-67
Identity = 141/182 (77.47%), Postives = 153/182 (84.07%), Query Frame = 0


Query: 1   MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQP 60
           M+SSTY+NSPCAACKFLRRKCLP+C+FAPYFPPEEPQKF +VHKIFGA NV KLLN VQP
Sbjct: 15  MASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 74

Query: 61  HLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYAC-KLPA 120
           H REDAV+SLAYEAEAR+KDPVYGCVGAISILQ QVIKLQKELDATNA+LIRYAC ++PA
Sbjct: 75  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACNEIPA 134

Query: 121 PSPSSSS------------HEKSSSTSSSYGHCYSGLYFSPWSNSHGPSEDIDHHDK-GE 169
           PSPS SS            HE SSST SSYGH YSGLYFSPWSN++GP    D HDK GE
Sbjct: 135 PSPSPSSSSQYARRSSSTNHEGSSST-SSYGHYYSGLYFSPWSNNNGPCG--DGHDKGGE 193

[Close]

BLAST of Sed0028052 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 185.7 bits (470), Expect = 4.4e-46
Identity = 84/111 (75.68%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 4   STYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPHLR 63
           S YTNSPCAACKFLRRKC  +C+FAPYFPPEEP KF +VH+IFGA NV K+L+ V PH R
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYA 115
           EDAV+SLAYEAEAR+KDPVYGCVGAIS+LQ QV++LQ+EL+ TNA L+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of Sed0028052 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-43
Identity = 100/183 (54.64%), Postives = 110/183 (60.11%), Query Frame = 0


Query: 2   SSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPH 61
           SSS   NSPCAACKFLRRKC+P CIFAPYFPPEEP KF +VHKIFGA NV KLLN + PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  LREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYACKL---- 121
            REDAV+SLAYEAEAR++DPVYGCVGAIS LQ QV +LQKELDA NA L  Y        
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 -----------PAPSPSSS----------------SHEKSSSTSSSYGHCYSGLYFSPWS 154
                      P P PS                   ++    T  SYG       F PW+
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYG------TFLPWN 179

[Close]

BLAST of Sed0028052 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.1e-39
Identity = 73/111 (65.77%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 3   SSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPHL 62
           +S+ TNSPCAACKFLRRKC PEC+FAPYFPP++PQKF +VHK+FGA NV KLLN + P  
Sbjct: 2   ASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 61

Query: 63  REDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRY 114
           REDAV+SLAYEA+ R++DPVYGCVG IS+LQ Q+ +LQ +L    + L +Y
Sbjct: 62  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]

BLAST of Sed0028052 vs. ExPASy Swiss-Prot
Match: Q32SG3 (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.4e-36
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 7   TNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPHLREDA 66
           T SPCAACKFLRRKC P+C+FAPYFPP+ PQKF  VH++FGA NV KLLN + P  REDA
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89

Query: 67  VSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYACKLPAPSPSS 125
           V+SLAYEA+ R++DPVYGCVG ISILQ  + +LQ++L      L +Y     A + ++
Sbjct: 90  VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTA 147

[Close]

BLAST of Sed0028052 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.1e-36
Identity = 71/120 (59.17%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 7   TNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPHLREDA 66
           T SPCAACKFLRRKC P+C+FAPYFPP+ PQKF  VH++FGA NV KLLN + P+ REDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 67  VSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYACKLPAPSPSSSS 126
           V+SLAYEA+ R++DPVYGCV  ISILQ  + +LQ++L      L +Y     A + +S+S
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASAS 154

[Close]

BLAST of Sed0028052 vs. ExPASy TrEMBL
Match: A0A5D3BPW0 (LOB domain-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00030 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.6e-68
Identity = 142/180 (78.89%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQP 60
           MSSSTY+NSPCAACKFLRRKCLP+C+FAPYFPPEEPQKF +VHKIFGA NV KLLN VQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYAC-KLPA 120
           H REDAV+SLAYEAEAR+KDPVYGCVGAISILQ QVIKLQKELDATNA LIRYAC ++PA
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 121 PSPSSS----------SHEKSSSTSSSYGHCYSGLYFSPWS-NSHGPSEDIDHHDKGEYK 169
           PSPSSS          SHE SSST SSYGH Y+GLYFSPWS N++GP    D HDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSST-SSYGHYYTGLYFSPWSNNNNGPCG--DGHDKGEYK 177

[Close]

BLAST of Sed0028052 vs. ExPASy TrEMBL
Match: A0A0A0LI15 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G839790 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.6e-68
Identity = 142/180 (78.89%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQP 60
           MSSSTY+NSPCAACKFLRRKCLP+C+FAPYFPPEEPQKF +VHKIFGA NV KLLN VQP
Sbjct: 30  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 89

Query: 61  HLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYAC-KLPA 120
           H REDAV+SLAYEAEAR+KDPVYGCVGAISILQ QVIKLQKELDATNA LIRYAC ++PA
Sbjct: 90  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 149

Query: 121 PSPSSS----------SHEKSSSTSSSYGHCYSGLYFSPWS-NSHGPSEDIDHHDKGEYK 169
           PSPSSS          SHE SSST SSYGH Y+GLYFSPWS N++GP    D HDKGEYK
Sbjct: 150 PSPSSSSQYARRSSSTSHEGSSST-SSYGHYYTGLYFSPWSNNNNGPCG--DGHDKGEYK 206

[Close]

BLAST of Sed0028052 vs. ExPASy TrEMBL
Match: A0A1S3B938 (LOB domain-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103487119 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.6e-68
Identity = 142/180 (78.89%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQP 60
           MSSSTY+NSPCAACKFLRRKCLP+C+FAPYFPPEEPQKF +VHKIFGA NV KLLN VQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYAC-KLPA 120
           H REDAV+SLAYEAEAR+KDPVYGCVGAISILQ QVIKLQKELDATNA LIRYAC ++PA
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 121 PSPSSS----------SHEKSSSTSSSYGHCYSGLYFSPWS-NSHGPSEDIDHHDKGEYK 169
           PSPSSS          SHE SSST SSYGH Y+GLYFSPWS N++GP    D HDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSST-SSYGHYYTGLYFSPWSNNNNGPCG--DGHDKGEYK 177

[Close]

BLAST of Sed0028052 vs. ExPASy TrEMBL
Match: A0A6J1DD95 (LOB domain-containing protein 25-like OS=Momordica charantia OX=3673 GN=LOC111019975 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.8e-67
Identity = 141/182 (77.47%), Postives = 153/182 (84.07%), Query Frame = 0


Query: 1   MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQP 60
           M+SSTY+NSPCAACKFLRRKCLP+C+FAPYFPPEEPQKF +VHKIFGA NV KLLN VQP
Sbjct: 15  MASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 74

Query: 61  HLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYAC-KLPA 120
           H REDAV+SLAYEAEAR+KDPVYGCVGAISILQ QVIKLQKELDATNA+LIRYAC ++PA
Sbjct: 75  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACNEIPA 134

Query: 121 PSPSSSS------------HEKSSSTSSSYGHCYSGLYFSPWSNSHGPSEDIDHHDK-GE 169
           PSPS SS            HE SSST SSYGH YSGLYFSPWSN++GP    D HDK GE
Sbjct: 135 PSPSPSSSSQYARRSSSTNHEGSSST-SSYGHYYSGLYFSPWSNNNGPCG--DGHDKGGE 193

[Close]

BLAST of Sed0028052 vs. ExPASy TrEMBL
Match: A0A6J1FAW3 (LOB domain-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442374 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.1e-66
Identity = 138/179 (77.09%), Postives = 150/179 (83.80%), Query Frame = 0


Query: 1   MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQP 60
           MSSSTY+NSPCAACKFLRRKCLP+C+FAPYFPPEEPQKF +VHKIFGA NV KLLN VQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYAC-KLPA 120
           H R+DAV+SLAYEAEAR+KDPVYGCVGAISILQ QVIKLQKELDATNA+LIRYAC ++PA
Sbjct: 61  HQRDDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACTEIPA 120

Query: 121 PSPSSS----------SHEKSSSTSSSYGHCYSGLYFSPWSNSHGPSEDIDHHDKGEYK 169
           PSPSSS          SH+ SSST SSYGH YS  YFSPWSNSH  S   D HDK E+K
Sbjct: 121 PSPSSSSQYARRSSSTSHDGSSST-SSYGHYYSNPYFSPWSNSHNGSCG-DGHDKAEFK 177

[Close]

BLAST of Sed0028052 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 185.7 bits (470), Expect = 3.2e-47
Identity = 84/111 (75.68%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 4   STYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPHLR 63
           S YTNSPCAACKFLRRKC  +C+FAPYFPPEEP KF +VH+IFGA NV K+L+ V PH R
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYA 115
           EDAV+SLAYEAEAR+KDPVYGCVGAIS+LQ QV++LQ+EL+ TNA L+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of Sed0028052 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 177.6 bits (449), Expect = 8.6e-45
Identity = 100/183 (54.64%), Postives = 110/183 (60.11%), Query Frame = 0


Query: 2   SSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPH 61
           SSS   NSPCAACKFLRRKC+P CIFAPYFPPEEP KF +VHKIFGA NV KLLN + PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  LREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYACKL---- 121
            REDAV+SLAYEAEAR++DPVYGCVGAIS LQ QV +LQKELDA NA L  Y        
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 -----------PAPSPSSS----------------SHEKSSSTSSSYGHCYSGLYFSPWS 154
                      P P PS                   ++    T  SYG       F PW+
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYG------TFLPWN 179

[Close]

BLAST of Sed0028052 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 177.6 bits (449), Expect = 8.6e-45
Identity = 100/183 (54.64%), Postives = 110/183 (60.11%), Query Frame = 0


Query: 2   SSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPH 61
           SSS   NSPCAACKFLRRKC+P CIFAPYFPPEEP KF +VHKIFGA NV KLLN + PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  LREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYACKL---- 121
            REDAV+SLAYEAEAR++DPVYGCVGAIS LQ QV +LQKELDA NA L  Y        
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 -----------PAPSPSSS----------------SHEKSSSTSSSYGHCYSGLYFSPWS 154
                      P P PS                   ++    T  SYG       F PW+
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYG------TFLPWN 179

[Close]

BLAST of Sed0028052 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 177.6 bits (449), Expect = 8.6e-45
Identity = 100/183 (54.64%), Postives = 110/183 (60.11%), Query Frame = 0


Query: 2   SSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPH 61
           SSS   NSPCAACKFLRRKC+P CIFAPYFPPEEP KF +VHKIFGA NV KLLN + PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  LREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYACKL---- 121
            REDAV+SLAYEAEAR++DPVYGCVGAIS LQ QV +LQKELDA NA L  Y        
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 -----------PAPSPSSS----------------SHEKSSSTSSSYGHCYSGLYFSPWS 154
                      P P PS                   ++    T  SYG       F PW+
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYG------TFLPWN 179

[Close]

BLAST of Sed0028052 vs. TAIR 10
Match: AT5G63090.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 177.6 bits (449), Expect = 8.6e-45
Identity = 100/183 (54.64%), Postives = 110/183 (60.11%), Query Frame = 0


Query: 2   SSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPH 61
           SSS   NSPCAACKFLRRKC+P CIFAPYFPPEEP KF +VHKIFGA NV KLLN + PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  LREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYACKL---- 121
            REDAV+SLAYEAEAR++DPVYGCVGAIS LQ QV +LQKELDA NA L  Y        
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 -----------PAPSPSSS----------------SHEKSSSTSSSYGHCYSGLYFSPWS 154
                      P P PS                   ++    T  SYG       F PW+
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYG------TFLPWN 179

The following BLAST results are available for this feature:

BLAST of Sed0028052 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905774.1	4.0e-68	79.44	LOB domain-containing protein 25-like [Benincasa hispida]	[more]
XP_011652293.1	1.2e-67	78.89	LOB domain-containing protein 25 isoform X2 [Cucumis sativus] >KAE8651263.1 hypo...	[more]
XP_004141196.1	1.2e-67	78.89	LOB domain-containing protein 25 isoform X1 [Cucumis sativus]	[more]
XP_008443563.1	1.2e-67	78.89	PREDICTED: LOB domain-containing protein 25-like [Cucumis melo] >KAA0053633.1 LO...	[more]
XP_022152200.1	5.7e-67	77.47	LOB domain-containing protein 25-like [Momordica charantia]	[more]

BLAST of Sed0028052 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8Q3	4.4e-46	75.68	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
Q9FML4	1.2e-43	54.64	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
O04479	3.1e-39	65.77	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
Q32SG3	5.4e-36	59.32	LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1	[more]
A2WXT0	7.1e-36	59.17	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]

BLAST of Sed0028052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPW0	5.6e-68	78.89	LOB domain-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LI15	5.6e-68	78.89	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G839790 PE=3 SV...	[more]
A0A1S3B938	5.6e-68	78.89	LOB domain-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103487119 PE...	[more]
A0A6J1DD95	2.8e-67	77.47	LOB domain-containing protein 25-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1FAW3	3.1e-66	77.09	LOB domain-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442...	[more]

BLAST of Sed0028052 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27650.1	3.2e-47	75.68	LOB domain-containing protein 25	[more]
AT5G63090.2	8.6e-45	54.64	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	8.6e-45	54.64	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.1	8.6e-45	54.64	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.4	8.6e-45	54.64	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..168
None	No IPR available	PANTHER	PTHR31301:SF12	LOB DOMAIN-CONTAINING PROTEIN 25	coord: 1..156
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..156
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 10..106 e-value: 1.4E-39 score: 134.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 9..110 score: 26.265909

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028052.1	Sed0028052.1	mRNA