Sed0028027 (gene) Chayote v1

Overview
NameSed0028027
Typegene
OrganismSechium edule (Chayote v1)
DescriptionMetallothionein-like protein
LocationLG07: 23989667 .. 23990779 (+)
RNA-Seq ExpressionSed0028027
SyntenySed0028027
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAAGAGTATTATTACAGTATAACCTTTCTGTTTTCCCCATTCTCCAGCAACTTCTTTAGCTCCTTCACCATGTCAGACAAGTGCGGCAACTGCGACTGCTCCGATAGCAGCAACTGCATGTAAGTATTCTTTGTTTTCCTACAAATTTTGCAGCAAATCTCATCAAGAGCCTTGCTTCACTTTTGATCGTGTTGCTGCCAAGAAGATAATCATAAAAGGCTATAATCAATGTTTTCCCTCAAAATCAGCAAACACCTGCAAAACTTGCCAATTGCTATTATGTTTCAATAATATCAAGTGAAGTAAAACAGCTTGTTTCAAGTGATTCTCACTTTTTCTTTCTTTTCCTTAAAAATATGATGCAATCAAAAGTTTTAAACTACTAGTCAAACAAAAGAAAATAAGGATCTAAGAGTTTGCTTATTTGAATTTCTATGGTAAAAAATGACGTGCTGCTCTATAATGACAGGAAAAAAGGAAGCAGCTATGGTGCTGTCATCATGGAGAACGAGAAGAGGTAATTGTTTCAGCTCATAGGGTATATACTTCCTTCAAAACAGCTAATTTTGAGCCCCCTTTTCTCAAGACACCCTCAAATTCAAAGGATTTAAATGCATCGTGAACTTTTATGGGTCAAGAGTAACAGAAATAAACAAATCATAAACAAAAGTACGTATAGATTTAGAAGAAAAGAGTGGTGCAAACTGCAAAGACATAAAATTCCAACAAGTTATTGACAAAAAGTGTTATACAGTACAGTACCTGGCATCTAACAATATATCTCTTGGTTCTGCAGCTACTTTGACACCATGGACGTGGGCGTCTCAGCGGCCGAGCACAACGACAAGTGCACCTGCAACCCCTGCAGTTGTAAGGACTGCCACTGCTGCAAATGAACACATACACCTGTTCTTCAATTAACAAAGTAATATGAAAGCGAGCAACAATGTAGCTGTGTTTGAAATGTATCCTATTATGTTCAAATCCTCAGTGCTAGCTAGAGGTGTTTTATGAATAATGTCTACTTCTGTTCTTCAACCATAGTCATGTAATGTTGGTCACTTCCATGGCCATGGGTTAGTCAGTAATGGATAAATTATACTACTAGTA

mRNA sequence

GCAAAAGAGTATTATTACAGTATAACCTTTCTGTTTTCCCCATTCTCCAGCAACTTCTTTAGCTCCTTCACCATGTCAGACAAGTGCGGCAACTGCGACTGCTCCGATAGCAGCAACTGCATGAAAAAAGGAAGCAGCTATGGTGCTGTCATCATGGAGAACGAGAAGAGCTACTTTGACACCATGGACGTGGGCGTCTCAGCGGCCGAGCACAACGACAAGTGCACCTGCAACCCCTGCAGTTGTAAGGACTGCCACTGCTGCAAATGAACACATACACCTGTTCTTCAATTAACAAAGTAATATGAAAGCGAGCAACAATGTAGCTGTGTTTGAAATGTATCCTATTATGTTCAAATCCTCAGTGCTAGCTAGAGGTGTTTTATGAATAATGTCTACTTCTGTTCTTCAACCATAGTCATGTAATGTTGGTCACTTCCATGGCCATGGGTTAGTCAGTAATGGATAAATTATACTACTAGTA

Coding sequence (CDS)

ATGTCAGACAAGTGCGGCAACTGCGACTGCTCCGATAGCAGCAACTGCATGAAAAAAGGAAGCAGCTATGGTGCTGTCATCATGGAGAACGAGAAGAGCTACTTTGACACCATGGACGTGGGCGTCTCAGCGGCCGAGCACAACGACAAGTGCACCTGCAACCCCTGCAGTTGTAAGGACTGCCACTGCTGCAAATGA

Protein sequence

MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCNPCSCKDCHCCK
Homology
[Close]
BLAST of Sed0028027 vs. NCBI nr
Match: KAG7031367.1 (Metallothionein-like protein type 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCNPCSCKD 60
          MS KCGNCDCSDSSNC+KKG+SYGAVIMENEKSYFD +D+ V AAEHNDKC+CNPCSCKD
Sbjct: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKD 60

Query: 61 CHCCK 66
          CHC K
Sbjct: 61 CHCGK 65

[Close]
BLAST of Sed0028027 vs. NCBI nr
Match: ADN33916.1 (metallothionein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 94.0 bits (232), Expect = 5.2e-16
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 5  CGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCNPCSCKDCHC 64
          CGNCDCSD + C+KKG+SYGAVIMENE S FD + +   AAEHNDKC+CNPCSC +C C
Sbjct: 4  CGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNCGC 62

[Close]
BLAST of Sed0028027 vs. NCBI nr
Match: ACZ69388.1 (metallothionein-like protein type 3 [Cucumis sativus] >KGN56243.1 hypothetical protein Csa_011531 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 5  CGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCNPCSCKDCHC 64
          CGNCDCSD + C+K+GSSYGAVI ENE S FD + +   AAEHNDKC+CNPCSC DC C
Sbjct: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGC 62

[Close]
BLAST of Sed0028027 vs. NCBI nr
Match: KAF3958020.1 (hypothetical protein CMV_017026 [Castanea mollissima])

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCN-PCSCK 60
          MSDKCGNCDC+D S C+KKGSSYG VI+E +KSY +T+ +   AAEH+ KC C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGSSYGLVIVETDKSYSNTVVMDAPAAEHDGKCKCGASCSCT 60

Query: 61 DCHC 64
          +C C
Sbjct: 61 NCTC 64

[Close]
BLAST of Sed0028027 vs. NCBI nr
Match: PON68011.1 (Metallothionein-like protein type [Parasponia andersonii])

HSP 1 Score: 81.6 bits (200), Expect = 2.7e-12
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTC-NPCSCK 60
          MSDKCG+CDC+D S C+KKGSSY  VI+E EKSY D + +   AAEHN KC C   CSC 
Sbjct: 1  MSDKCGSCDCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCV 60

Query: 61 DCHC 64
          +C C
Sbjct: 61 NCTC 64

[Close]
BLAST of Sed0028027 vs. ExPASy Swiss-Prot
Match: A2WLS0 (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica OX=39946 GN=MT3A PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-13
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTC-NPCSCK 60
          MSDKCGNCDC+D S C+KKG+SYG VI+E EKS+F+     V+A E N  C C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEE----VAAGEENGGCKCGTSCSCT 60

Query: 61 DCHCCK 66
          DC C K
Sbjct: 61 DCKCGK 62

[Close]
BLAST of Sed0028027 vs. ExPASy Swiss-Prot
Match: A1YTM8 (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica OX=39947 GN=MT3A PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-13
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTC-NPCSCK 60
          MSDKCGNCDC+D S C+KKG+SYG VI+E EKS+F+     V+A E N  C C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEE----VAAGEENGGCKCGTSCSCT 60

Query: 61 DCHCCK 66
          DC C K
Sbjct: 61 DCKCGK 62

[Close]
BLAST of Sed0028027 vs. ExPASy Swiss-Prot
Match: Q40256 (Metallothionein-like protein type 3 OS=Musa acuminata OX=4641 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-13
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 5  CGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCN-PCSCKDCHC 64
          CGNCDC D S C+KKG+SYG  I+E EKSY D + V   AAEH+ KC C   C+C DC C
Sbjct: 4  CGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAEAAEHDGKCKCGAACACTDCKC 63

[Close]
BLAST of Sed0028027 vs. ExPASy Swiss-Prot
Match: A3B0Y1 (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica OX=39947 GN=MT3B PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.6e-12
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCNP-CSCK 60
          MSDKCGNCDC+D S C+KKG+SYG VI++ EKS+F+ M   V   E++ KC C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE-MAEEVGYEENDGKCKCTTGCSCA 60

Query: 61 DCHCCK 66
           C+C K
Sbjct: 61 GCNCGK 65

[Close]
BLAST of Sed0028027 vs. ExPASy Swiss-Prot
Match: O24059 (Metallothionein-like protein type 3 OS=Malus domestica OX=3750 GN=MT2 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-12
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCNP-CSCK 60
          MS KC NCDC+DS+ C+KKG+SY  VI+E E    DT+ V   AAEH+ KC C   CSC 
Sbjct: 1  MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFVDAPAAEHDGKCKCGTGCSCV 60

Query: 61 DCHC 64
           C C
Sbjct: 61 SCTC 64

[Close]
BLAST of Sed0028027 vs. ExPASy TrEMBL
Match: E5GBS4 (Metallothionein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 5  CGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCNPCSCKDCHC 64
          CGNCDCSD + C+KKG+SYGAVIMENE S FD + +   AAEHNDKC+CNPCSC +C C
Sbjct: 4  CGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNCGC 62

[Close]
BLAST of Sed0028027 vs. ExPASy TrEMBL
Match: D2J0B0 (Metallothionein-like protein type 3 OS=Cucumis sativus OX=3659 GN=MTP-3 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.6e-16
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 5  CGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCNPCSCKDCHC 64
          CGNCDCSD + C+K+GSSYGAVI ENE S FD + +   AAEHNDKC+CNPCSC DC C
Sbjct: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGC 62

[Close]
BLAST of Sed0028027 vs. ExPASy TrEMBL
Match: A0A7N2MAR8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.6e-13
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCN-PCSCK 60
          MSDKCGNCDC+D S C+KKGSSYG VI+E +KSY +T+ +   AAEH+ KC C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGSSYGLVIVETDKSYSNTVVMDAPAAEHDGKCKCGASCSCT 60

Query: 61 DCHC 64
          +C C
Sbjct: 61 NCTC 64

[Close]
BLAST of Sed0028027 vs. ExPASy TrEMBL
Match: A0A2N9F6R2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10356 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.9e-13
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTCN-PCSCK 60
          MSDKCGNCDC+D S C+KKGSSYG VI+E +KSY +T+ +   AAEH  KC C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGSSYGLVIVETDKSYTNTVVMDAPAAEHEGKCKCGASCSCT 60

Query: 61 DCHC 64
          +C C
Sbjct: 61 NCTC 64

[Close]
BLAST of Sed0028027 vs. ExPASy TrEMBL
Match: A0A2P5D400 (Metallothionein-like protein type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_098150 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTC-NPCSCK 60
          MSDKCG+CDC+D S C+KKGSSY  VI+E EKSY D + +   AAEHN KC C   CSC 
Sbjct: 1  MSDKCGSCDCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCV 60

Query: 61 DCHC 64
          +C C
Sbjct: 61 NCTC 64

[Close]
BLAST of Sed0028027 vs. TAIR 10
Match: AT3G15353.1 (metallothionein 3 )

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTC---NPCS 60
          MS  CG+CDC+D + C+KKG+SY   I+E ++SY + M + V A E+N  C C   + CS
Sbjct: 1  MSSNCGSCDCADKTQCVKKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCS 60

Query: 61 CKDCHCC 65
          C +C CC
Sbjct: 61 CVNCTCC 67

[Close]
BLAST of Sed0028027 vs. TAIR 10
Match: AT3G15353.2 (metallothionein 3 )

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 0 

Query: 1  MSDKCGNCDCSDSSNCMKKGSSYGAVIMENEKSYFDTMDVGVSAAEHNDKCTC---NPCS 60
          MS  CG+CDC+D +   KKG+SY   I+E ++SY + M + V A E+N  C C   + CS
Sbjct: 1  MSSNCGSCDCADKT--QKKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCS 60

Query: 61 CKDCHCC 65
          C +C CC
Sbjct: 61 CVNCTCC 65

The following BLAST results are available for this feature:
BLAST of Sed0028027 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031367.11.8e-2484.62Metallothionein-like protein type 3 [Cucurbita argyrosperma subsp. argyrosperma][more]
ADN33916.15.2e-1669.49metallothionein-like protein [Cucumis melo subsp. melo][more]
ACZ69388.11.2e-1569.49metallothionein-like protein type 3 [Cucumis sativus] >KGN56243.1 hypothetical p... [more]
KAF3958020.11.6e-1260.94hypothetical protein CMV_017026 [Castanea mollissima][more]
PON68011.12.7e-1260.94Metallothionein-like protein type [Parasponia andersonii][more]
BLAST of Sed0028027 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2WLS03.3e-1359.09Metallothionein-like protein 3A OS=Oryza sativa subsp. indica OX=39946 GN=MT3A P... [more]
A1YTM83.3e-1359.09Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica OX=39947 GN=MT3A... [more]
Q402565.6e-1358.33Metallothionein-like protein type 3 OS=Musa acuminata OX=4641 PE=3 SV=1[more]
A3B0Y13.6e-1256.06Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica OX=39947 GN=MT3B... [more]
O240598.1e-1254.69Metallothionein-like protein type 3 OS=Malus domestica OX=3750 GN=MT2 PE=3 SV=1[more]
BLAST of Sed0028027 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
E5GBS42.5e-1669.49Metallothionein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
D2J0B05.6e-1669.49Metallothionein-like protein type 3 OS=Cucumis sativus OX=3659 GN=MTP-3 PE=2 SV=... [more]
A0A7N2MAR87.6e-1360.94Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A2N9F6R29.9e-1360.94Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10356 PE=4 SV=1[more]
A0A2P5D4001.3e-1260.94Metallothionein-like protein type OS=Parasponia andersonii OX=3476 GN=PanWU01x14... [more]
BLAST of Sed0028027 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15353.13.1e-1146.27metallothionein 3 [more]
AT3G15353.21.1e-0844.78metallothionein 3 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0028027.1Sed0028027.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046914 transition metal ion binding