Sed0028023 (gene) Chayote v1

Overview
NameSed0028023
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCupin_3 domain-containing protein
LocationLG09: 25102952 .. 25103923 (+)
RNA-Seq ExpressionSed0028023
SyntenySed0028023
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTCGCTATAAATTCTCTCACAAACTTCATCATTCTCCTCATTTTTGTTCCATCCAAAACCATAAGATTCCTTTCCTTTCATTGTCTTTTATTTCCCTTTCTCTTTCTGTCTCTCTTTCTCTCAATAAATACCTCCACATAAATCCCACCCTTCTCTTTTAATTTCCCCTCACCCTTTTTGTAACCTAAAGGAAAAGAAGAATATGGCCAATGAAGAGGGAAATAGCAACAATCCTAACTCAACCAACAACCTTAGAATCATTGTAGAAAGAAACCCTTCTCAAGCCAAGCTCTCTCAGCTCAACATCCACTGCTGGCCAAAGTAAGTATACCACGATTCCGTCTATCGATTTAAGCTTTTGAGTTCGGTTCCATAATAATTGCTTAACTTTTTTAGATGGGGTTGTTCCAAACACACTATAATCCATCCATTTAAACTTTTGGGTTGGGTATGCTGTCACTTATTAGTTTAAGCTTTTGAGCTCTCGATCGGGTGATAATTAGCTGCTTTTATTTACATGGGGTTGTTTGAAATAATCTATCCACTTAAACTTTTGTGTTCGATGGGATATGATTTAGAACACTCTAATCTATCGGTTTAAGCTTTCGTGTGTTAGATGGGGGTGTTCGGCGGGGAAATACCAACTGAAATTTGAGGCGGAAGAGACATGCTATTTGGTGAAGGGAAAAGTGAAGGCTTATGCAAAAGGATCAGCTGATTCTGAATACACTGAGTTTGGGGCTGGCGATTTGGTCACTATTCCTAAAGGACTTAGCTGCACTTGGGATGTTTCTGTTGCTGTTGATAAGTTCTACAAGTTTGAGTCTCAATCTTAAATCCAATCTTTTCTTTTTATTTTCTTATAATTAGTCCCTCTAATTTACCTTCTATTTCTTTCTTTCCCTTTTCTTTTTCTGTAAATATATTCTTCTTTTCCTCTATCTCTAAAATGGGAGAGAGAAGGGTTGGAG

mRNA sequence

AGTCGCTATAAATTCTCTCACAAACTTCATCATTCTCCTCATTTTTGTTCCATCCAAAACCATAAGATTCCTTTCCTTTCATTGTCTTTTATTTCCCTTTCTCTTTCTGTCTCTCTTTCTCTCAATAAATACCTCCACATAAATCCCACCCTTCTCTTTTAATTTCCCCTCACCCTTTTTGTAACCTAAAGGAAAAGAAGAATATGGCCAATGAAGAGGGAAATAGCAACAATCCTAACTCAACCAACAACCTTAGAATCATTGTAGAAAGAAACCCTTCTCAAGCCAAGCTCTCTCAGCTCAACATCCACTGCTGGCCAAAATGGGGGTGTTCGGCGGGGAAATACCAACTGAAATTTGAGGCGGAAGAGACATGCTATTTGGTGAAGGGAAAAGTGAAGGCTTATGCAAAAGGATCAGCTGATTCTGAATACACTGAGTTTGGGGCTGGCGATTTGGTCACTATTCCTAAAGGACTTAGCTGCACTTGGGATGTTTCTGTTGCTGTTGATAAGTTCTACAAGTTTGAGTCTCAATCTTAAATCCAATCTTTTCTTTTTATTTTCTTATAATTAGTCCCTCTAATTTACCTTCTATTTCTTTCTTTCCCTTTTCTTTTTCTGTAAATATATTCTTCTTTTCCTCTATCTCTAAAATGGGAGAGAGAAGGGTTGGAG

Coding sequence (CDS)

ATGGCCAATGAAGAGGGAAATAGCAACAATCCTAACTCAACCAACAACCTTAGAATCATTGTAGAAAGAAACCCTTCTCAAGCCAAGCTCTCTCAGCTCAACATCCACTGCTGGCCAAAATGGGGGTGTTCGGCGGGGAAATACCAACTGAAATTTGAGGCGGAAGAGACATGCTATTTGGTGAAGGGAAAAGTGAAGGCTTATGCAAAAGGATCAGCTGATTCTGAATACACTGAGTTTGGGGCTGGCGATTTGGTCACTATTCCTAAAGGACTTAGCTGCACTTGGGATGTTTCTGTTGCTGTTGATAAGTTCTACAAGTTTGAGTCTCAATCTTAA

Protein sequence

MANEEGNSNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS
Homology
BLAST of Sed0028023 vs. NCBI nr
Match: KAG7025258.1 (hypothetical protein SDJN02_11753 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0

Query: 1   MANEEGNSNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYL 60
           MANEEGNSNNP STNNLRIIVERNPSQAKLS LNI  WPKWGCSAGKYQLKFEAEETCYL
Sbjct: 1   MANEEGNSNNP-STNNLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYL 60

Query: 61  VKGKVKAYAKGSADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 113
           VKGKVKAYAKGSA++EYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFES S
Sbjct: 61  VKGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPS 111

BLAST of Sed0028023 vs. NCBI nr
Match: KAG6592849.1 (hypothetical protein SDJN03_12325, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 0

Query: 1   MANEEGNSNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYL 60
           MANEEGNSNNP STNNLRII+ERNPSQAKLS LNI  WPKWGCSAGKYQLKFEAEETCYL
Sbjct: 1   MANEEGNSNNP-STNNLRIIIERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYL 60

Query: 61  VKGKVKAYAKGSADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 113
           VKGKVKAYAKGSA++EYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFES S
Sbjct: 61  VKGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPS 111

BLAST of Sed0028023 vs. NCBI nr
Match: XP_022960185.1 (uncharacterized protein LOC111460998 [Cucurbita moschata] >XP_022960186.1 uncharacterized protein LOC111460998 [Cucurbita moschata] >XP_023513548.1 uncharacterized protein LOC111778119 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0

Query: 1   MANEEGNSNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYL 60
           MANEEGNSNNP STNNLRIIVERNPSQAKLS LNI  WPKWGCSAGKYQLKFEAEETCYL
Sbjct: 1   MANEEGNSNNP-STNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYL 60

Query: 61  VKGKVKAYAKGSADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 113
           VKGKVKAYAKGSA++EYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFES S
Sbjct: 61  VKGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPS 111

BLAST of Sed0028023 vs. NCBI nr
Match: XP_023005099.1 (uncharacterized protein LOC111498188 [Cucurbita maxima] >XP_023005100.1 uncharacterized protein LOC111498188 [Cucurbita maxima] >XP_023005101.1 uncharacterized protein LOC111498188 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 0

Query: 1   MANEEGNSNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYL 60
           MANEEGNSNNP STNNLRIIVERNPS+AKLS LNI  WPKWGCSAGKYQLKFEAEETCYL
Sbjct: 1   MANEEGNSNNP-STNNLRIIVERNPSEAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYL 60

Query: 61  VKGKVKAYAKGSADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 113
           VKGKVKAYAKGSA++EYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFES S
Sbjct: 61  VKGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPS 111

BLAST of Sed0028023 vs. NCBI nr
Match: XP_038906875.1 (uncharacterized protein LOC120092760 [Benincasa hispida])

HSP 1 Score: 195.7 bits (496), Expect = 2.2e-46
Identity = 97/116 (83.62%), Postives = 102/116 (87.93%), Query Frame = 0

Query: 3   NEEGNSNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVK 62
           NEE  + NP++ NNL+IIVERNPSQAKLSQLNIH WPKWGCSAGKYQLKFEAEETCYLVK
Sbjct: 4   NEEEGNKNPSTNNNLKIIVERNPSQAKLSQLNIHGWPKWGCSAGKYQLKFEAEETCYLVK 63

Query: 63  GKVKAYAKG------SADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 113
           GKVKAY KG      S+  EYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS
Sbjct: 64  GKVKAYPKGIDSSSSSSCEEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 119

BLAST of Sed0028023 vs. ExPASy TrEMBL
Match: A0A6J1H6X6 (uncharacterized protein LOC111460998 OS=Cucurbita moschata OX=3662 GN=LOC111460998 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.4e-52
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0

Query: 1   MANEEGNSNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYL 60
           MANEEGNSNNP STNNLRIIVERNPSQAKLS LNI  WPKWGCSAGKYQLKFEAEETCYL
Sbjct: 1   MANEEGNSNNP-STNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYL 60

Query: 61  VKGKVKAYAKGSADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 113
           VKGKVKAYAKGSA++EYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFES S
Sbjct: 61  VKGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPS 111

BLAST of Sed0028023 vs. ExPASy TrEMBL
Match: A0A6J1KU03 (uncharacterized protein LOC111498188 OS=Cucurbita maxima OX=3661 GN=LOC111498188 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.9e-51
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 0

Query: 1   MANEEGNSNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYL 60
           MANEEGNSNNP STNNLRIIVERNPS+AKLS LNI  WPKWGCSAGKYQLKFEAEETCYL
Sbjct: 1   MANEEGNSNNP-STNNLRIIVERNPSEAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYL 60

Query: 61  VKGKVKAYAKGSADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 113
           VKGKVKAYAKGSA++EYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFES S
Sbjct: 61  VKGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPS 111

BLAST of Sed0028023 vs. ExPASy TrEMBL
Match: A0A1S3CBJ5 (uncharacterized protein LOC103498932 OS=Cucumis melo OX=3656 GN=LOC103498932 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.9e-46
Identity = 99/125 (79.20%), Postives = 103/125 (82.40%), Query Frame = 0

Query: 1   MANEEG----NSNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEE 60
           MANEEG    N NNP++ N+L+IIVERNPSQAKLSQLNIH WPKWGCSAGKYQLKFEAEE
Sbjct: 1   MANEEGGNNNNHNNPSTNNSLKIIVERNPSQAKLSQLNIHRWPKWGCSAGKYQLKFEAEE 60

Query: 61  TCYLVKGKVKAYAKG---------SADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYK 113
           TCYLVKGKVKAY KG         S   EY EFGAGDLV IPKGLSCTWDVSVAVDKFYK
Sbjct: 61  TCYLVKGKVKAYPKGIDSSSSSSSSCCEEYIEFGAGDLVIIPKGLSCTWDVSVAVDKFYK 120

BLAST of Sed0028023 vs. ExPASy TrEMBL
Match: A0A2P5C0K2 (RmlC-like cupins superfamily protein OS=Trema orientale OX=63057 GN=TorRG33x02_301930 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 9.3e-43
Identity = 84/105 (80.00%), Postives = 96/105 (91.43%), Query Frame = 0

Query: 8   SNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKA 67
           SN+ +S  +LRIIVE+NPS+A+LS+LNI CWPKWGCS GKYQLKF+AEETCYL+KGKVKA
Sbjct: 11  SNSSSSGTSLRIIVEKNPSEARLSELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKA 70

Query: 68  YAKGSADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 113
           Y KGS+ SE+ EFGAGDLVTIPKGLSCTWDVSVAVDK+YKFES S
Sbjct: 71  YPKGSSSSEFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESSS 115

BLAST of Sed0028023 vs. ExPASy TrEMBL
Match: A0A2P5AKT6 (RmlC-like cupins superfamily protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_322550 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.6e-42
Identity = 84/111 (75.68%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 2   ANEEGNSNNPNSTNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLV 61
           ++   +S + +S  +LRIIVE+NPS+AKLS+LNI CWPKWGCS GKYQLKF+AEETCYL+
Sbjct: 6   SSSSSSSYSSSSGTSLRIIVEKNPSEAKLSELNIKCWPKWGCSPGKYQLKFDAEETCYLL 65

Query: 62  KGKVKAYAKGSADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESQS 113
           KGKVKAY KGS+ SE+ EFGAGDLVTIPKGLSCTWDVSVAVDK+YKFES S
Sbjct: 66  KGKVKAYPKGSSSSEFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESSS 116

BLAST of Sed0028023 vs. TAIR 10
Match: AT3G04300.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 3.9e-33
Identity = 62/93 (66.67%), Postives = 71/93 (76.34%), Query Frame = 0

Query: 17  LRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSADSE 76
           + I++E NPS  +LS L +  WPKW C  GKY L FE  ETCYLVKGKVK Y KGS  SE
Sbjct: 1   MNIVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGS--SE 60

Query: 77  YTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFE 110
           + EFGAGDLVTIPKGLSCTWDVS+ +DK YKF+
Sbjct: 61  FVEFGAGDLVTIPKGLSCTWDVSLFIDKHYKFD 91

BLAST of Sed0028023 vs. TAIR 10
Match: AT4G28703.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-32
Identity = 65/102 (63.73%), Postives = 77/102 (75.49%), Query Frame = 0

Query: 16  NLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAK----G 75
           N RIIVE+NPSQA+L +L    WPKWGCS GKY LK+EAEE CY+++GKVK Y K     
Sbjct: 5   NPRIIVEQNPSQARLDELKFKSWPKWGCSPGKYHLKYEAEEICYILRGKVKVYPKPPPSS 64

Query: 76  SADSEY---TEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFES 111
           S+D+E     EFGAGD+VT PKGLSCTWDVS++VDK Y F S
Sbjct: 65  SSDAEVEWCVEFGAGDIVTFPKGLSCTWDVSLSVDKHYIFLS 106

BLAST of Sed0028023 vs. TAIR 10
Match: AT4G10300.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-27
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 0

Query: 2   ANEEGNSNNPN---------STNNLRIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKF 61
           +N+  NS  P+         ST  L I +E+NP ++KL+QL +  WPKWGC   K+   +
Sbjct: 20  SNKPYNSRRPSSMAAAIRAESTEKLGITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTY 79

Query: 62  EAEETCYLVKGKVKAYAKGSADSEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFE 110
            A+ETCYL++GKVK Y  GS   E  E  AGD V  PKG+SCTWDVSVAVDK Y+FE
Sbjct: 80  SAKETCYLLQGKVKVYPNGS--DEGVEIEAGDFVVFPKGMSCTWDVSVAVDKHYQFE 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7025258.11.0e-5193.75hypothetical protein SDJN02_11753 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6592849.11.3e-5192.86hypothetical protein SDJN03_12325, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022960185.11.7e-5193.75uncharacterized protein LOC111460998 [Cucurbita moschata] >XP_022960186.1 unchar... [more]
XP_023005099.13.8e-5192.86uncharacterized protein LOC111498188 [Cucurbita maxima] >XP_023005100.1 uncharac... [more]
XP_038906875.12.2e-4683.62uncharacterized protein LOC120092760 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1H6X68.4e-5293.75uncharacterized protein LOC111460998 OS=Cucurbita moschata OX=3662 GN=LOC1114609... [more]
A0A6J1KU031.9e-5192.86uncharacterized protein LOC111498188 OS=Cucurbita maxima OX=3661 GN=LOC111498188... [more]
A0A1S3CBJ58.9e-4679.20uncharacterized protein LOC103498932 OS=Cucumis melo OX=3656 GN=LOC103498932 PE=... [more]
A0A2P5C0K29.3e-4380.00RmlC-like cupins superfamily protein OS=Trema orientale OX=63057 GN=TorRG33x02_3... [more]
A0A2P5AKT64.6e-4275.68RmlC-like cupins superfamily protein OS=Parasponia andersonii OX=3476 GN=PanWU01... [more]
Match NameE-valueIdentityDescription
AT3G04300.13.9e-3366.67RmlC-like cupins superfamily protein [more]
AT4G28703.13.3e-3263.73RmlC-like cupins superfamily protein [more]
AT4G10300.12.4e-2750.43RmlC-like cupins superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008579(S)-ureidoglycine aminohydrolase, cupin-3 domainPFAMPF05899Cupin_3coord: 31..106
e-value: 1.2E-25
score: 89.0
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10Jelly Rollscoord: 6..108
e-value: 8.1E-34
score: 117.3
NoneNo IPR availablePANTHERPTHR33271:SF3OS02G0620400 PROTEINcoord: 1..111
NoneNo IPR availablePANTHERPTHR33271OS04G0445200 PROTEINcoord: 1..111
NoneNo IPR availableCDDcd02227cupin_TM1112-likecoord: 38..108
e-value: 2.19171E-25
score: 88.7915
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 29..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0028023.1Sed0028023.1mRNA