Sed0028014 (gene) Chayote v1

Overview


Name	Sed0028014
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	LG11: 23937939 .. 23939513 (+)
RNA-Seq Expression	Sed0028014
Synteny	Sed0028014

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCACTTTCATCAGTCACTGCCAGAGCCACATCCTTCCATCTCCACCCCTCTTTCCCATCTTCATCCTTCATTTCCAACACCTTTCACATTCCCTCAAAACACTCCTTTCGCTCAACCTCAATAATAGCTCAAGCCCAATCTCCGCCTCGCCAAACATGGCTCCCGGGCCTCGACCCGCCGCCTCATCTCGACGGGACCCTCGCCGGAGATTTCGGGTTCGACCCACTTGGGCTCGGCCAAGACCCGCCCAGCTTGAAGTGGTTCGTCCAAGCCGAGCTCGTCCATTGTCGCTTCGCCATGCTCGGCGTCTCGGGAATTCTTCTCACCGATGTCTGTAACCAATCCTTAATGAATTCTGGGTTTATTTTTTCTTCATCTTATCTTGTTTGTTTGTGGCAGTTGCTTCGTGTGACAGGAATCAGTGAATTGCCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTCACCAACAAACAAACGCTCTTCATTGTTCAGCTGCTCTTGATGGGGTCTCATCTCTTCCTTTTAATCTTTGACTTCATGTGTGTGGCTGTATTCATTCCTTCTGCTTTTGTAGGTTTGTGGAAACCAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAATCAGGAACTTTCTTTGGATTGGAATCTGCTTTCGAAGGTCTCGAACCCGGGTAATGTATATGTCAATTAATTTTAACTCATTTCGGTTTAACGAATTCATTCGCGACATCTTAGTAATGTCAATCTGAATAGAATTCAACTAGATACAAACATTATGAGGTGTTTGGATGAATGATTAGAATGACTAATTATTTTGATTGATTAGAAATTAAAGTTGTAGTAATGCCTCGTTCGGATGTGAATTTTTGTTGAGTTGCGTCCAATGATTTATTTGGATGTGGATTTTGGTAGAGGGTTACAGAAAAGGTTTTAAAGTAATGAATTATTTTTTAGTGATTAGAAATGAAAGATTGTTTTGAATGAATATTTTTTATTGGTTATTATAGCTCGTCTGGATATAATTTTTTGGAGAGGTGGGGTAAAAATCATTTGCAATACCTCTGTTAAATACTAAAAGCAAACACCTTTAGAGGTTTATAGGTTTATTTTATGGTCTTTTGATTACTGTACCAACCAGTAGAGAGAAATCTGAACTTTATATTATAATTGAAAGGAGGAATAGTTGTTATTTCCTCTTGAACTTACTTCATGAATTAAACTCTCTTGTGGATTAACTTGCAGGTACCCTGGAGGTCCCCTGCTGAATCCTCTTGGCCTGGCTAAAGATATCAAGAATGCCCATCAATGGAAGCTCAAGGAGATTAAGAATGGTTAAGTTTTCCACTCACATTTTTAAATTTTCATTTTCCCCTTCTGCTCGGACTAAGCTTCGCTTTCTCGAATTACAGGACGCCTTGCGATGGTAGCCATGCTTGGGATCTTTGTGCAAGCCTATGTGACTCAAACAGGGCCAATAGATAACCTCTTGGAACACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTCTCAAGCTCAAGTCCTTGA

mRNA sequence

ATGGCGGTTTCACTTTCATCAGTCACTGCCAGAGCCACATCCTTCCATCTCCACCCCTCTTTCCCATCTTCATCCTTCATTTCCAACACCTTTCACATTCCCTCAAAACACTCCTTTCGCTCAACCTCAATAATAGCTCAAGCCCAATCTCCGCCTCGCCAAACATGGCTCCCGGGCCTCGACCCGCCGCCTCATCTCGACGGGACCCTCGCCGGAGATTTCGGGTTCGACCCACTTGGGCTCGGCCAAGACCCGCCCAGCTTGAAGTGGTTCGTCCAAGCCGAGCTCGTCCATTGTCGCTTCGCCATGCTCGGCGTCTCGGGAATTCTTCTCACCGATTTGCTTCGTGTGACAGGAATCAGTGAATTGCCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTCACCAACAAACAAACGCTCTTCATTGTTCAGCTGCTCTTGATGGGGTTTGTGGAAACCAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAATCAGGAACTTTCTTTGGATTGGAATCTGCTTTCGAAGGTCTCGAACCCGGGTACCCTGGAGGTCCCCTGCTGAATCCTCTTGGCCTGGCTAAAGATATCAAGAATGCCCATCAATGGAAGCTCAAGGAGATTAAGAATGGACGCCTTGCGATGGTAGCCATGCTTGGGATCTTTGTGCAAGCCTATGTGACTCAAACAGGGCCAATAGATAACCTCTTGGAACACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTCTCAAGCTCAAGTCCTTGA

Coding sequence (CDS)

ATGGCGGTTTCACTTTCATCAGTCACTGCCAGAGCCACATCCTTCCATCTCCACCCCTCTTTCCCATCTTCATCCTTCATTTCCAACACCTTTCACATTCCCTCAAAACACTCCTTTCGCTCAACCTCAATAATAGCTCAAGCCCAATCTCCGCCTCGCCAAACATGGCTCCCGGGCCTCGACCCGCCGCCTCATCTCGACGGGACCCTCGCCGGAGATTTCGGGTTCGACCCACTTGGGCTCGGCCAAGACCCGCCCAGCTTGAAGTGGTTCGTCCAAGCCGAGCTCGTCCATTGTCGCTTCGCCATGCTCGGCGTCTCGGGAATTCTTCTCACCGATTTGCTTCGTGTGACAGGAATCAGTGAATTGCCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTCACCAACAAACAAACGCTCTTCATTGTTCAGCTGCTCTTGATGGGGTTTGTGGAAACCAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAATCAGGAACTTTCTTTGGATTGGAATCTGCTTTCGAAGGTCTCGAACCCGGGTACCCTGGAGGTCCCCTGCTGAATCCTCTTGGCCTGGCTAAAGATATCAAGAATGCCCATCAATGGAAGCTCAAGGAGATTAAGAATGGACGCCTTGCGATGGTAGCCATGCTTGGGATCTTTGTGCAAGCCTATGTGACTCAAACAGGGCCAATAGATAACCTCTTGGAACACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTCTCAAGCTCAAGTCCTTGA

Protein sequence

MAVSLSSVTARATSFHLHPSFPSSSFISNTFHIPSKHSFRSTSIIAQAQSPPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIIQTLSSSSP

Homology

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BLAST of Sed0028014 vs. NCBI nr
Match: XP_038886221.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 446.0 bits (1146), Expect = 2.2e-121
Identity = 221/262 (84.35%), Postives = 236/262 (90.08%), Query Frame = 0


Query: 1   MAVSLSSVTARATSFHLHPSFPSSSF---ISNTFHIPSKHSFRSTSIIAQAQSPPRQTWL 60
           MAVS+S+ TARAT+FHL PS  SSS+    +    +  +   R T +IAQAQS  RQTWL
Sbjct: 1   MAVSVSAATARATAFHLQPSSSSSSYTPSFNPNQSLRLRSPSRRTLLIAQAQSEHRQTWL 60

Query: 61  PGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRV 120
           PGLDPPPHLDGTLAGDFGFDPLGLG+DP SLKW+VQAELVH RFAMLGVSGILLTDLLRV
Sbjct: 61  PGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLLRV 120

Query: 121 TGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLE 180
           TGISELPVWYNAGAVEYGF NK+TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE
Sbjct: 121 TGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE 180

Query: 181 SAFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTGP 240
           +AFEGLEPGYPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGP
Sbjct: 181 AAFEGLEPGYPGGPLLNPLGIAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTHTGP 240

Query: 241 IDNLLEHLSNPWHKTIIQTLSS 260
           IDNL+EHLSNPWHKTIIQTLSS
Sbjct: 241 IDNLVEHLSNPWHKTIIQTLSS 262

[Close]

BLAST of Sed0028014 vs. NCBI nr
Match: XP_023001834.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 442.6 bits (1137), Expect = 2.4e-120
Identity = 224/263 (85.17%), Postives = 235/263 (89.35%), Query Frame = 0


Query: 1   MAVSLSSVTARATSFHLHPSFP-SSSFISNTFHIPSKHSFRSTSIIAQAQSPPRQTWLPG 60
           MAVSLS+    AT FHL PS    SS +S+  H+    S R+ +  AQ+QS PRQTWLPG
Sbjct: 1   MAVSLSA----ATPFHLLPSSSLYSSSLSSKQHLLRSPSRRTVTAQAQSQSQPRQTWLPG 60

Query: 61  LDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRVTG 120
           LDPPPHLDGTLAGDFGFDPLGLG+DP SLKWFVQAELVH RFAMLGVSGILLTDLLRVTG
Sbjct: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTG 120

Query: 121 ISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLESA 180
           ISELPVWYNAGAVEYGF NK+TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESA
Sbjct: 121 ISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           FEGLEPGYPGGPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID
Sbjct: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240

Query: 241 NLLEHLSNPWHKTIIQTLSSSSP 263
           NL+EHLSNPWH TII TLSSSSP
Sbjct: 241 NLVEHLSNPWHNTIIHTLSSSSP 259

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BLAST of Sed0028014 vs. NCBI nr
Match: XP_023536986.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.9 bits (1130), Expect = 1.6e-119
Identity = 227/266 (85.34%), Postives = 236/266 (88.72%), Query Frame = 0


Query: 1   MAVSLSSVTARATSFHLHPSFPSSSFISNTFHIPSKHSFRSTS---IIAQA----QSPPR 60
           MAVSLS+    ATSFHL    PSSSF S++   P +H  RS S   +IAQA    QS PR
Sbjct: 1   MAVSLSA----ATSFHL---LPSSSFYSSSLS-PKQHLLRSPSRRTVIAQAQSQSQSQPR 60

Query: 61  QTWLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTD 120
           QTWLPGLDPPPHLDGTLAGDFGFDPLGLG+DP SLKWFVQAELVH RFAMLGVSGILLTD
Sbjct: 61  QTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTD 120

Query: 121 LLRVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTF 180
           LLRVTGISELPVWYNAGAVEYGF NK+TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTF
Sbjct: 121 LLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF 180

Query: 181 FGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVT 240
           FGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT
Sbjct: 181 FGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVT 240

Query: 241 QTGPIDNLLEHLSNPWHKTIIQTLSS 260
           QTGPIDNL+EHLSNPWH TII TLSS
Sbjct: 241 QTGPIDNLVEHLSNPWHNTIIHTLSS 258

[Close]

BLAST of Sed0028014 vs. NCBI nr
Match: XP_022951251.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moschata] >KAG6585667.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020573.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 438.3 bits (1126), Expect = 4.5e-119
Identity = 222/263 (84.41%), Postives = 233/263 (88.59%), Query Frame = 0


Query: 1   MAVSLSSVTARATSFHLHPSFPSSSFISNTF----HIPSKHSFRSTSIIAQAQSPPRQTW 60
           MAVSLS+    ATSFHL    PSSSF S++     H+    S R+ +  AQ+QS PRQTW
Sbjct: 1   MAVSLSA----ATSFHL---LPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTW 60

Query: 61  LPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLR 120
           LPGLDPPPHLDGTLAGDFGFDPLGLG+DP SLKWFVQAELVH RFAMLGVSGILLTDLLR
Sbjct: 61  LPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLR 120

Query: 121 VTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGL 180
           VTGISELPVWYNAGAVEYGF NK+TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGL
Sbjct: 121 VTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGL 180

Query: 181 ESAFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTG 240
           ESAFEGLEPGYPGGPLLNPLGLAKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVTQTG
Sbjct: 181 ESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTG 240

Query: 241 PIDNLLEHLSNPWHKTIIQTLSS 260
           PIDNL+EHLSNPWH T+I TLSS
Sbjct: 241 PIDNLVEHLSNPWHNTVIHTLSS 256

[Close]

BLAST of Sed0028014 vs. NCBI nr
Match: XP_004150882.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus] >KGN62506.1 hypothetical protein Csa_022315 [Cucumis sativus])

HSP 1 Score: 438.0 bits (1125), Expect = 5.9e-119
Identity = 218/263 (82.89%), Postives = 234/263 (88.97%), Query Frame = 0


Query: 1   MAVSLSSVTARATSFHLHPSFPSSSFISN-TFHIPSKHSFRSTSIIAQAQSPPRQTWLPG 60
           MAVS S+    AT+ HLHPS  S + + N +  +  +   R T +IA AQS  RQTWLPG
Sbjct: 1   MAVSFSA----ATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPG 60

Query: 61  LDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRVTG 120
           LDPPPHLDGTLAGDFGFDPLGLG+DP SLKW+VQAELVHCRFAMLGVSG+LLTDLLRVTG
Sbjct: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTG 120

Query: 121 ISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLESA 180
           ISELPVWYNAGAVEYGF NK+TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+A
Sbjct: 121 ISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           F+GLEPGYPGGPLLNPLG+AKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVT TGPID
Sbjct: 181 FKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPID 240

Query: 241 NLLEHLSNPWHKTIIQTLSSSSP 263
           NL+EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 NLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of Sed0028014 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 6.6e-97
Identity = 166/210 (79.05%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 53  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLT 112
           R TWLPGL+PPP+LDG LAGD+GFDPLGLG+DP SLKW+VQAELVH RFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 113 DLLRVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGT 172
           DLLR TGI  LPVWY AGAV++ F + +TL +VQ LLMGF ETKRYMDF SPGSQA+ G+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 173 -FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAY 232
            FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAH WKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 233 VTQTGPIDNLLEHLSNPWHKTIIQTLSSSS 262
           VT TGPIDNL+EHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Sed0028014 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.6e-53
Identity = 107/212 (50.47%), Postives = 133/212 (62.74%), Query Frame = 0


Query: 43  SIIAQAQSPPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFA 102
           S+ A A  P R  W PG  PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VHCR+A
Sbjct: 42  SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWA 101

Query: 103 MLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFK 162
           MLG +GI + + L   GI   P WY AG  EY FT+K TLF+V+L+L+G+ E +R+ D  
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADII 161

Query: 163 SPGSQAQSGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHQWKLKEIKNGRLAMV 222
            PGS      F    +   G + GYPGG   +PLG          + + KEIKNGRLAM+
Sbjct: 162 KPGSVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 221

Query: 223 AMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTI 254
           A++G + Q   T TGPIDNL  HL++P H TI
Sbjct: 222 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 250

[Close]

BLAST of Sed0028014 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 8.5e-52
Identity = 104/205 (50.73%), Postives = 137/205 (66.83%), Query Frame = 0


Query: 56  WLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLL 115
           WLPGL  P +L G+L GD GFDPLGL +DP +L+WFVQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 56  WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115

Query: 116 RVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFG 175
              GI  +P WY AG  EY F +  TLF+++ +L  +VE +R+ D K+PGS  Q   F  
Sbjct: 116 TSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF-- 175

Query: 176 LESAFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQT 235
            + +    E GYPGG + NPL  A  +    + K KEI NGRLAM+A LG  +Q  VT  
Sbjct: 176 KQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVTGK 235

Query: 236 GPIDNLLEHLSNPWHKTIIQTLSSS 261
           GP DNLL+H+S+PWH TI+QTL  +
Sbjct: 236 GPFDNLLQHISDPWHNTIVQTLGGN 252

[Close]

BLAST of Sed0028014 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.4e-51
Identity = 105/220 (47.73%), Postives = 133/220 (60.45%), Query Frame = 0


Query: 40  RSTSIIAQAQSPPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHC 99
           RS ++ A A  P R  W PG  PP  LDG+L GDFGFDPLGLG DP SLKW  QAELVH 
Sbjct: 52  RSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHS 111

Query: 100 RFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYM 159
           R+AMLG +GI + + L   G+   P WY AG  EY FT+  TLF+++L+L+G+ E +R+ 
Sbjct: 112 RWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAEGRRWA 171

Query: 160 DFKSPGSQAQSGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHQWKLKEIKNGRL 219
           D   PG       F    +   G + GYPGG   +PLG          + + KEIKNGRL
Sbjct: 172 DIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRL 231

Query: 220 AMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIIQTLS 259
           AM+A++G + Q   T TGPIDNL  HL++P H TI    S
Sbjct: 232 AMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of Sed0028014 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.4e-51
Identity = 118/262 (45.04%), Postives = 152/262 (58.02%), Query Frame = 0


Query: 2   AVSLSSVTARATSFHLHPSFPSSSFISNTFHIPSKHS----FRSTSIIAQAQSPPRQTWL 61
           AV+ SS ++R     +  +   +SF+       SK+S     RS + +  A  P R  W 
Sbjct: 12  AVAFSSPSSRRNGSIVGTT--KASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWF 71

Query: 62  PGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRV 121
           PG  PPP LDG+L GDFGFDPLGL  DP SL+W  QAELVHCR+AMLG +GI + +LL  
Sbjct: 72  PGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTK 131

Query: 122 TGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLE 181
            GI   P WY AG  EY FT+  TLFIV+L+L+G+ E +R+ D   PG       F    
Sbjct: 132 IGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIF--PN 191

Query: 182 SAFEGLEPGYPGGPLLNPLGLAK-DIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTG 241
           +   G + GYPGG   +PLG          + + KEIKNGRLAM+A++G + Q   T TG
Sbjct: 192 NKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 251

Query: 242 PIDNLLEHLSNPWHKTIIQTLS 259
           PIDNL  HL++P H TI    S
Sbjct: 252 PIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of Sed0028014 vs. ExPASy TrEMBL
Match: A0A6J1KNS0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495909 PE=3 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 1.2e-120
Identity = 224/263 (85.17%), Postives = 235/263 (89.35%), Query Frame = 0


Query: 1   MAVSLSSVTARATSFHLHPSFP-SSSFISNTFHIPSKHSFRSTSIIAQAQSPPRQTWLPG 60
           MAVSLS+    AT FHL PS    SS +S+  H+    S R+ +  AQ+QS PRQTWLPG
Sbjct: 1   MAVSLSA----ATPFHLLPSSSLYSSSLSSKQHLLRSPSRRTVTAQAQSQSQPRQTWLPG 60

Query: 61  LDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRVTG 120
           LDPPPHLDGTLAGDFGFDPLGLG+DP SLKWFVQAELVH RFAMLGVSGILLTDLLRVTG
Sbjct: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTG 120

Query: 121 ISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLESA 180
           ISELPVWYNAGAVEYGF NK+TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESA
Sbjct: 121 ISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           FEGLEPGYPGGPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID
Sbjct: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240

Query: 241 NLLEHLSNPWHKTIIQTLSSSSP 263
           NL+EHLSNPWH TII TLSSSSP
Sbjct: 241 NLVEHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of Sed0028014 vs. ExPASy TrEMBL
Match: A0A6J1GH16 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454144 PE=3 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.2e-119
Identity = 222/263 (84.41%), Postives = 233/263 (88.59%), Query Frame = 0


Query: 1   MAVSLSSVTARATSFHLHPSFPSSSFISNTF----HIPSKHSFRSTSIIAQAQSPPRQTW 60
           MAVSLS+    ATSFHL    PSSSF S++     H+    S R+ +  AQ+QS PRQTW
Sbjct: 1   MAVSLSA----ATSFHL---LPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTW 60

Query: 61  LPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLR 120
           LPGLDPPPHLDGTLAGDFGFDPLGLG+DP SLKWFVQAELVH RFAMLGVSGILLTDLLR
Sbjct: 61  LPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLR 120

Query: 121 VTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGL 180
           VTGISELPVWYNAGAVEYGF NK+TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGL
Sbjct: 121 VTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGL 180

Query: 181 ESAFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTG 240
           ESAFEGLEPGYPGGPLLNPLGLAKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVTQTG
Sbjct: 181 ESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTG 240

Query: 241 PIDNLLEHLSNPWHKTIIQTLSS 260
           PIDNL+EHLSNPWH T+I TLSS
Sbjct: 241 PIDNLVEHLSNPWHNTVIHTLSS 256

[Close]

BLAST of Sed0028014 vs. ExPASy TrEMBL
Match: A0A0A0LRB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.9e-119
Identity = 218/263 (82.89%), Postives = 234/263 (88.97%), Query Frame = 0


Query: 1   MAVSLSSVTARATSFHLHPSFPSSSFISN-TFHIPSKHSFRSTSIIAQAQSPPRQTWLPG 60
           MAVS S+    AT+ HLHPS  S + + N +  +  +   R T +IA AQS  RQTWLPG
Sbjct: 1   MAVSFSA----ATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPG 60

Query: 61  LDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRVTG 120
           LDPPPHLDGTLAGDFGFDPLGLG+DP SLKW+VQAELVHCRFAMLGVSG+LLTDLLRVTG
Sbjct: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTG 120

Query: 121 ISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLESA 180
           ISELPVWYNAGAVEYGF NK+TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+A
Sbjct: 121 ISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           F+GLEPGYPGGPLLNPLG+AKDIKNAH WKLKEIKNGRLAMVAMLGIFVQAYVT TGPID
Sbjct: 181 FKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPID 240

Query: 241 NLLEHLSNPWHKTIIQTLSSSSP 263
           NL+EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 NLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of Sed0028014 vs. ExPASy TrEMBL
Match: A0A5A7UY53 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00360 PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.4e-118
Identity = 215/264 (81.44%), Postives = 234/264 (88.64%), Query Frame = 0


Query: 1   MAVSLSSVTARATSFHLHPSFPSSSFISNTFH--IPSKHSFRSTSIIAQAQSPPRQTWLP 60
           MAVS+S+    AT FHLHPS  S + + N  +  +  +   R + +IA AQS  RQTWLP
Sbjct: 1   MAVSISA----ATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLP 60

Query: 61  GLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRVT 120
           GLDPPP+LDGTL GDFGFDPLGLG+DP SLKW+VQAELVHCRFAMLGV+G+LLTDLLRVT
Sbjct: 61  GLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVT 120

Query: 121 GISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLES 180
           GISELPVWYNAGAVEYGF NK+TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+
Sbjct: 121 GISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEA 180

Query: 181 AFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPI 240
           AFEGLEPGYPGGPLLNPLG+AKD+KNAH WKLKEIKNGRLAMVAMLGIFVQAYVT TGPI
Sbjct: 181 AFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPI 240

Query: 241 DNLLEHLSNPWHKTIIQTLSSSSP 263
           DNL+EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 DNLVEHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of Sed0028014 vs. ExPASy TrEMBL
Match: A0A1S3BBL1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487892 PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.4e-118
Identity = 215/264 (81.44%), Postives = 234/264 (88.64%), Query Frame = 0


Query: 1   MAVSLSSVTARATSFHLHPSFPSSSFISNTFH--IPSKHSFRSTSIIAQAQSPPRQTWLP 60
           MAVS+S+    AT FHLHPS  S + + N  +  +  +   R + +IA AQS  RQTWLP
Sbjct: 1   MAVSISA----ATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLP 60

Query: 61  GLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRVT 120
           GLDPPP+LDGTL GDFGFDPLGLG+DP SLKW+VQAELVHCRFAMLGV+G+LLTDLLRVT
Sbjct: 61  GLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVT 120

Query: 121 GISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLES 180
           GISELPVWYNAGAVEYGF NK+TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+
Sbjct: 121 GISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEA 180

Query: 181 AFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPI 240
           AFEGLEPGYPGGPLLNPLG+AKD+KNAH WKLKEIKNGRLAMVAMLGIFVQAYVT TGPI
Sbjct: 181 AFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPI 240

Query: 241 DNLLEHLSNPWHKTIIQTLSSSSP 263
           DNL+EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 DNLVEHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of Sed0028014 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 355.1 bits (910), Expect = 4.7e-98
Identity = 166/210 (79.05%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 53  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLT 112
           R TWLPGL+PPP+LDG LAGD+GFDPLGLG+DP SLKW+VQAELVH RFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 113 DLLRVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGT 172
           DLLR TGI  LPVWY AGAV++ F + +TL +VQ LLMGF ETKRYMDF SPGSQA+ G+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 173 -FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAY 232
            FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAH WKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 233 VTQTGPIDNLLEHLSNPWHKTIIQTLSSSS 262
           VT TGPIDNL+EHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Sed0028014 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 355.1 bits (910), Expect = 4.7e-98
Identity = 166/210 (79.05%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 53  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLT 112
           R TWLPGL+PPP+LDG LAGD+GFDPLGLG+DP SLKW+VQAELVH RFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 113 DLLRVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGT 172
           DLLR TGI  LPVWY AGAV++ F + +TL +VQ LLMGF ETKRYMDF SPGSQA+ G+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 173 -FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAY 232
            FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAH WKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 233 VTQTGPIDNLLEHLSNPWHKTIIQTLSSSS 262
           VT TGPIDNL+EHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Sed0028014 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 208.8 bits (530), Expect = 5.4e-54
Identity = 107/212 (50.47%), Postives = 133/212 (62.74%), Query Frame = 0


Query: 43  SIIAQAQSPPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFA 102
           S+ A A  P R  W PG  PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VHCR+A
Sbjct: 42  SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWA 101

Query: 103 MLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFK 162
           MLG +GI + + L   GI   P WY AG  EY FT+K TLF+V+L+L+G+ E +R+ D  
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADII 161

Query: 163 SPGSQAQSGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHQWKLKEIKNGRLAMV 222
            PGS      F    +   G + GYPGG   +PLG          + + KEIKNGRLAM+
Sbjct: 162 KPGSVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 221

Query: 223 AMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTI 254
           A++G + Q   T TGPIDNL  HL++P H TI
Sbjct: 222 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 250

[Close]

BLAST of Sed0028014 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 202.6 bits (514), Expect = 3.9e-52
Identity = 114/259 (44.02%), Postives = 159/259 (61.39%), Query Frame = 0


Query: 5   LSSVTARATSFHLHPSFPSSSFIS-NTFHIPSKHSFRSTSIIAQAQS----PPRQTWLPG 64
           +++VT  A++    P      F++ ++  +    SF S    A+  S      +  WLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 65  LDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRVTG 124
           L  P +L G+LAGD GFDPLGL +DP +LKWFVQAELV+ R+AMLGV+G+LL ++    G
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 125 ISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLESA 184
           I  +P WY+AG  +Y F +  TLF+++ +L  +VE +R+ D K+PGS  Q   F   + +
Sbjct: 121 IINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYS 180

Query: 185 FEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 244
               E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +
Sbjct: 181 LPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFE 240

Query: 245 NLLEHLSNPWHKTIIQTLS 259
           NLL+HLS+PWH TI+QT +
Sbjct: 241 NLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of Sed0028014 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-44
Identity = 94/221 (42.53%), Postives = 128/221 (57.92%), Query Frame = 0


Query: 40  RSTSIIAQAQSPPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHC 99
           +  S + +   P R  W PG  PP  LDG+L GDFGFDPLGLG DP +LKWF QAEL+H 
Sbjct: 52  KEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHS 111

Query: 100 RFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYM 159
           R+AML V+GI++ + L   G  E   WY+AG+ EY F +  TLF+ Q++LMG+ E +R+ 
Sbjct: 112 RWAMLAVTGIIIPECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWA 171

Query: 160 DFKSPGSQAQSGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHQWKLKEIKNGRL 219
           D   PGS      +          + GYPGG   + +   +   +     + KEIKNGRL
Sbjct: 172 DLIKPGSVDIEPKY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRL 231

Query: 220 AMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIIQTLSS 260
           AM+A LG   QA  T   PI+NL+ HL++P H  +    +S
Sbjct: 232 AMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269

The following BLAST results are available for this feature:

BLAST of Sed0028014 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886221.1	2.2e-121	84.35	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispid...	[more]
XP_023001834.1	2.4e-120	85.17	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima...	[more]
XP_023536986.1	1.6e-119	85.34	photosystem I chlorophyll a/b-binding protein 5, chloroplastic-like [Cucurbita p...	[more]
XP_022951251.1	4.5e-119	84.41	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moscha...	[more]
XP_004150882.1	5.9e-119	82.89	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]...	[more]

BLAST of Sed0028014 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C639	6.6e-97	79.05	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
Q9SYW8	7.6e-53	50.47	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
Q9SQL2	8.5e-52	50.73	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
P13869	1.4e-51	47.73	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
P10708	1.4e-51	45.04	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]

BLAST of Sed0028014 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KNS0	1.2e-120	85.17	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GH16	2.2e-119	84.41	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0LRB4	2.9e-119	82.89	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5A7UY53	1.4e-118	81.44	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BBL1	1.4e-118	81.44	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Sed0028014 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45474.1	4.7e-98	79.05	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	4.7e-98	79.05	photosystem I light harvesting complex gene 5	[more]
AT3G61470.1	5.4e-54	50.47	photosystem I light harvesting complex gene 2	[more]
AT3G47470.1	3.9e-52	44.02	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G19150.1	1.3e-44	42.53	photosystem I light harvesting complex gene 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 62..231 e-value: 3.5E-48 score: 164.2
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 54..261 e-value: 7.3E-61 score: 207.5
None	No IPR available	PANTHER	PTHR21649:SF67	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC	coord: 29..259
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 51..259
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 29..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028014.1	Sed0028014.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding