Sed0027993 (gene) Chayote v1

Overview


Name	Sed0027993
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG01: 13036464 .. 13037242 (+)
RNA-Seq Expression	Sed0027993
Synteny	Sed0027993

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTATCCAGTGCGACGCGTCACAGGGAACGAAACAAGCCGGATGGTTCTGGTTGGTTTCGATTCCAGAAGGGTCAAAATCAATGGCCTGCCTGCTTCAAATTCTGATTGCGGTTTTCAACTCTGTTGAATCTCTGTTATATAAGAACTCGCCCGCCTCACAGATCCTCATATTACAGATTATTCGTTTGGAGATGGAGAGTTGGAAGCAGAGCAATCGCCGGAACAGAGAGACGACGACGACGACGGAGAAGATCGGAGCTCCGTTTCCGGTGCACAGCCAGGTGAGGAAGATCAAGGAGGAATCGGAGACGGTCATCGATTGGCGACCGGGTCAGCCGGAGATCAGACCGCCGGCCGCCTTCCGGGACGTGAACCGCCCGATCTCTCGCTCGCCGCTAGGAATCTCCGGCCGCCCGATTTCGGTGGGGGAATTGTAGACGGAGATTTTTTCTTCTTCGGAGGTTGTTTTCGGTTGTTCTCCGTTTTCGTTTCTGATACTACAGATTTCAGTAGCCCTACCCTAGTTTTCCTTTTCTTTCTTTGTAAATATTTTGTTTTGTTTAATACATACTTTTTTTTTTTTTTTTGTATATTAATTTTGTTTTTTTTTTTTTAAATCTCTTGAAAATATGACTTTGAGGACCGCCGAGCTAGGAGAAATATTTACATCATGATCCGGCATGATGTATAGAATAATGTCAAATTATGTGGCTTAATATGTGCCACAATCTATTTTTGTTTATTTTATTTCTTTTATATCATGAATTTAAAATCAA

mRNA sequence

GAATTATCCAGTGCGACGCGTCACAGGGAACGAAACAAGCCGGATGGTTCTGGTTGGTTTCGATTCCAGAAGGGTCAAAATCAATGGCCTGCCTGCTTCAAATTCTGATTGCGGTTTTCAACTCTGTTGAATCTCTGTTATATAAGAACTCGCCCGCCTCACAGATCCTCATATTACAGATTATTCGTTTGGAGATGGAGAGTTGGAAGCAGAGCAATCGCCGGAACAGAGAGACGACGACGACGACGGAGAAGATCGGAGCTCCGTTTCCGGTGCACAGCCAGGTGAGGAAGATCAAGGAGGAATCGGAGACGGTCATCGATTGGCGACCGGGTCAGCCGGAGATCAGACCGCCGGCCGCCTTCCGGGACGTGAACCGCCCGATCTCTCGCTCGCCGCTAGGAATCTCCGGCCGCCCGATTTCGGTGGGGGAATTGTAGACGGAGATTTTTTCTTCTTCGGAGGTTGTTTTCGGTTGTTCTCCGTTTTCGTTTCTGATACTACAGATTTCAGTAGCCCTACCCTAGTTTTCCTTTTCTTTCTTTGTAAATATTTTGTTTTGTTTAATACATACTTTTTTTTTTTTTTTTGTATATTAATTTTGTTTTTTTTTTTTTAAATCTCTTGAAAATATGACTTTGAGGACCGCCGAGCTAGGAGAAATATTTACATCATGATCCGGCATGATGTATAGAATAATGTCAAATTATGTGGCTTAATATGTGCCACAATCTATTTTTGTTTATTTTATTTCTTTTATATCATGAATTTAAAATCAA

Coding sequence (CDS)

ATGGCCTGCCTGCTTCAAATTCTGATTGCGGTTTTCAACTCTGTTGAATCTCTGTTATATAAGAACTCGCCCGCCTCACAGATCCTCATATTACAGATTATTCGTTTGGAGATGGAGAGTTGGAAGCAGAGCAATCGCCGGAACAGAGAGACGACGACGACGACGGAGAAGATCGGAGCTCCGTTTCCGGTGCACAGCCAGGTGAGGAAGATCAAGGAGGAATCGGAGACGGTCATCGATTGGCGACCGGGTCAGCCGGAGATCAGACCGCCGGCCGCCTTCCGGGACGTGAACCGCCCGATCTCTCGCTCGCCGCTAGGAATCTCCGGCCGCCCGATTTCGGTGGGGGAATTGTAG

Protein sequence

MACLLQILIAVFNSVESLLYKNSPASQILILQIIRLEMESWKQSNRRNRETTTTTEKIGAPFPVHSQVRKIKEESETVIDWRPGQPEIRPPAAFRDVNRPISRSPLGISGRPISVGEL

Homology

[Close]

BLAST of Sed0027993 vs. NCBI nr
Match: KAG6584306.1 (DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 30  ILQIIRLEMESWKQSNRRNRETTTTTEKIGAPFPVHSQVRKIKEESETVIDWRPGQPEIR 89
           IL++  LEME+WKQ+ R         EKIG PFPVHSQVRKIKEESE +IDWRPGQPEI+
Sbjct: 603 ILRVRVLEMENWKQNTR--------MEKIGTPFPVHSQVRKIKEESEMIIDWRPGQPEIK 662

Query: 90  -PPAAFRDVNRPISRSPLGISGRPISVGE 118
            PPAAFR++NR ISRSPLG+SGRPISVGE
Sbjct: 663 PPPAAFREINRQISRSPLGVSGRPISVGE 683

[Close]

BLAST of Sed0027993 vs. NCBI nr
Match: KAG7012158.1 (hypothetical protein SDJN02_24910, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.2 bits (313), Expect = 3.8e-25
Identity = 64/81 (79.01%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 38  MESWKQSNRRNRETTTTTEKIGAPFPVHSQVRKIKEESETVIDWRPGQPEIRP-PAAFRD 97
           ME WK +NR NRE     EKIG  FPVHSQVRKIKEESET+IDW PGQPEIRP  AAFRD
Sbjct: 1   MEDWKVNNRENRE---AMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRD 60

Query: 98  VNRPISRSPLGISGRPISVGE 118
           +NRPISRSPLGISGRPISVG+
Sbjct: 61  MNRPISRSPLGISGRPISVGD 78

[Close]

BLAST of Sed0027993 vs. NCBI nr
Match: KAG6572977.1 (NF-X1-type zinc finger protein NFXL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 62/78 (79.49%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 38  MESWKQSNRRNRETTTTTEKIGAPFPVHSQVRKIKEESETVIDWRPGQPEIRP-PAAFRD 97
           ME WK +NR NRE     EKIG  FPVHSQVRKIKEESET+IDW PGQPEIRP  AAFRD
Sbjct: 1   MEDWKVNNRENRE---AMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRD 60

Query: 98  VNRPISRSPLGISGRPIS 115
           +NRPISRSPLGISGRPIS
Sbjct: 61  MNRPISRSPLGISGRPIS 75

[Close]

BLAST of Sed0027993 vs. NCBI nr
Match: TYJ99047.1 (hypothetical protein E5676_scaffold248G002510 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 54  TTEKIGAPFPVHSQVRKIKEESETVIDWRPGQPEIRPP-AAFRDVNRPISRSPLGISGRP 113
           +TEKI  PFPVHSQVRKIKEESET++DWRPGQPEIRPP AAFR     ISRSPLGISGRP
Sbjct: 12  STEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQ----ISRSPLGISGRP 71

Query: 114 ISVGE 118
           ISVG+
Sbjct: 72  ISVGD 72

[Close]

BLAST of Sed0027993 vs. NCBI nr
Match: KGN64190.1 (hypothetical protein Csa_013611, partial [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.5e-18
Identity = 52/66 (78.79%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 52  TTTTEKIGAPFPVHSQVRKIKEESETVIDWRPGQPEIRPPAAFRDVNRPISRSPLGISGR 111
           T + EKI APFPVHSQVRKIKEES+T IDWRPGQPEIRPP A     R ISRSPLGISGR
Sbjct: 10  TNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTA---SFRQISRSPLGISGR 69

Query: 112 PISVGE 118
           PISVG+
Sbjct: 70  PISVGD 72

[Close]

BLAST of Sed0027993 vs. ExPASy TrEMBL
Match: A0A5D3BIV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002510 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.8e-19
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 54  TTEKIGAPFPVHSQVRKIKEESETVIDWRPGQPEIRPP-AAFRDVNRPISRSPLGISGRP 113
           +TEKI  PFPVHSQVRKIKEESET++DWRPGQPEIRPP AAFR     ISRSPLGISGRP
Sbjct: 12  STEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQ----ISRSPLGISGRP 71

Query: 114 ISVGE 118
           ISVG+
Sbjct: 72  ISVGD 72

[Close]

BLAST of Sed0027993 vs. ExPASy TrEMBL
Match: A0A0A0LQJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 52/66 (78.79%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 52  TTTTEKIGAPFPVHSQVRKIKEESETVIDWRPGQPEIRPPAAFRDVNRPISRSPLGISGR 111
           T + EKI APFPVHSQVRKIKEES+T IDWRPGQPEIRPP A     R ISRSPLGISGR
Sbjct: 10  TNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTA---SFRQISRSPLGISGR 69

Query: 112 PISVGE 118
           PISVG+
Sbjct: 70  PISVGD 72

[Close]

BLAST of Sed0027993 vs. ExPASy TrEMBL
Match: A0A151R370 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_041930 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 59  GAPFPVHSQVRKIKEESETVIDWRPGQPEIRPPAAFRDVNRPISRSPLGISGRPISVGE 118
           G   P+HSQVRKIK+ESE +IDW PG+PE+RP       +RPISRSPLGISG+PISVGE
Sbjct: 11  GKGVPIHSQVRKIKQESEKIIDWSPGKPEVRPVLREIGRDRPISRSPLGISGQPISVGE 69

[Close]

BLAST of Sed0027993 vs. ExPASy TrEMBL
Match: A0A498I238 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_023484 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.7e-13
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 38  MESWKQSNRRNRETTTTTEKIGAPFPVHSQVRKIKEESETVIDWRPGQPEIRPPAAFRDV 97
           ME+   +N R  E     E++G  FPVHSQVRKIK+ES+  IDW PG+PE+R P  F+++
Sbjct: 1   MENRNSNNSRKME--EGFEEVG--FPVHSQVRKIKQESDKTIDWLPGKPEMRRP-VFKEI 60

Query: 98  NRPISRSPLGISGRPISVGE 118
            R ISRSPLGIS RPISVG+
Sbjct: 61  TRQISRSPLGISCRPISVGD 75

[Close]

BLAST of Sed0027993 vs. ExPASy TrEMBL
Match: A0A540KEP9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_041834 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.7e-13
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 38  MESWKQSNRRNRETTTTTEKIGAPFPVHSQVRKIKEESETVIDWRPGQPEIRPPAAFRDV 97
           ME+   +N R  E     E++G  FPVHSQVRKIK+ES+  IDW PG+PE+R P  F+++
Sbjct: 1   MENRNSNNSRKME--EGFEEVG--FPVHSQVRKIKQESDKTIDWLPGKPEMRRP-VFKEI 60

Query: 98  NRPISRSPLGISGRPISVGE 118
            R ISRSPLGIS RPISVG+
Sbjct: 61  TRQISRSPLGISCRPISVGD 75

The following BLAST results are available for this feature:

BLAST of Sed0027993 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584306.1	1.3e-25	71.91	DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. s...	[more]
KAG7012158.1	3.8e-25	79.01	hypothetical protein SDJN02_24910, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6572977.1	1.2e-23	79.49	NF-X1-type zinc finger protein NFXL1, partial [Cucurbita argyrosperma subsp. sor...	[more]
TYJ99047.1	1.2e-18	81.54	hypothetical protein E5676_scaffold248G002510 [Cucumis melo var. makuwa]	[more]
KGN64190.1	3.5e-18	78.79	hypothetical protein Csa_013611, partial [Cucumis sativus]	[more]

BLAST of Sed0027993 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027993 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIV4	5.8e-19	81.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LQJ2	1.7e-18	78.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1	[more]
A0A151R370	1.6e-13	67.80	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_041930 PE=4 SV=1	[more]
A0A498I238	4.7e-13	57.50	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_023484 PE=4 SV=1	[more]
A0A540KEP9	4.7e-13	57.50	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_041834 PE=4 SV=1	[more]

BLAST of Sed0027993 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..63
None	No IPR available	PANTHER	PTHR34780	OS08G0427800 PROTEIN	coord: 45..117
None	No IPR available	PANTHER	PTHR34780:SF5	OS08G0427800 PROTEIN	coord: 45..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027993.1	Sed0027993.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane