Sed0027972 (gene) Chayote v1

Overview


Name	Sed0027972
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nuclear transcription factor Y subunit B-3
Location	LG01: 4260963 .. 4261616 (+)
RNA-Seq Expression	Sed0027972
Synteny	Sed0027972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGACAATTGATAACACTATTTAGCCTTTTCCTTTTTCTTTTTTGAATCTATGAAGTTCAAAATCAAAGTTGAAGATCAAATGGCTGATCTTTCTTTCAAAACACCATTTTCATGGTTCATTTCTCTCACTTTTTTTCTCCTTTGTTTAAGTTTTTTTGGCTTTAAATTCTCATCTTTTTTACTTACCTCAACAGCTCTAATTATGTCCATATTTTATTTTTCAATCTCCAAAAAAAACCCAATTCCGATTCACAAATTTGTCCAAGAAAAAAAGGAAGTGAAATCTTTTGTCTCCGACCGGAAATTCTCGCCGGCGACCGGCGATTTGTCGTCGGAGAGTGAATGTGCCGACGATAATTTCACGACCACCGAGGAATCTGAAATGGAATGGCCGTTTTCCGACCGGGTTTACCTGGACCGGTCCGACGACGGTTCGATTTCTGACGAGGAAAGCTTGATTGAAATTGCTCTCCCGACCGGGCATTACGTCAGCAACAAGTTCGATGAGGACGAGGAAGAAGTAGACGACATGTCGTTTTGTTATCAGAAACTGTCGGCTGAAATAAATGACATCAATGAAGAGGAGAATTTGATCGAGATCGACATATCGATTGGCTCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

mRNA sequence

CAAGACAATTGATAACACTATTTAGCCTTTTCCTTTTTCTTTTTTGAATCTATGAAGTTCAAAATCAAAGTTGAAGATCAAATGGCTGATCTTTCTTTCAAAACACCATTTTCATGGTTCATTTCTCTCACTTTTTTTCTCCTTTGTTTAAGTTTTTTTGGCTTTAAATTCTCATCTTTTTTACTTACCTCAACAGCTCTAATTATGTCCATATTTTATTTTTCAATCTCCAAAAAAAACCCAATTCCGATTCACAAATTTGTCCAAGAAAAAAAGGAAGTGAAATCTTTTGTCTCCGACCGGAAATTCTCGCCGGCGACCGGCGATTTGTCGTCGGAGAGTGAATGTGCCGACGATAATTTCACGACCACCGAGGAATCTGAAATGGAATGGCCGTTTTCCGACCGGGTTTACCTGGACCGGTCCGACGACGGTTCGATTTCTGACGAGGAAAGCTTGATTGAAATTGCTCTCCCGACCGGGCATTACGTCAGCAACAAGTTCGATGAGGACGAGGAAGAAGTAGACGACATGTCGTTTTGTTATCAGAAACTGTCGGCTGAAATAAATGACATCAATGAAGAGGAGAATTTGATCGAGATCGACATATCGATTGGCTCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

Coding sequence (CDS)

ATGAAGTTCAAAATCAAAGTTGAAGATCAAATGGCTGATCTTTCTTTCAAAACACCATTTTCATGGTTCATTTCTCTCACTTTTTTTCTCCTTTGTTTAAGTTTTTTTGGCTTTAAATTCTCATCTTTTTTACTTACCTCAACAGCTCTAATTATGTCCATATTTTATTTTTCAATCTCCAAAAAAAACCCAATTCCGATTCACAAATTTGTCCAAGAAAAAAAGGAAGTGAAATCTTTTGTCTCCGACCGGAAATTCTCGCCGGCGACCGGCGATTTGTCGTCGGAGAGTGAATGTGCCGACGATAATTTCACGACCACCGAGGAATCTGAAATGGAATGGCCGTTTTCCGACCGGGTTTACCTGGACCGGTCCGACGACGGTTCGATTTCTGACGAGGAAAGCTTGATTGAAATTGCTCTCCCGACCGGGCATTACGTCAGCAACAAGTTCGATGAGGACGAGGAAGAAGTAGACGACATGTCGTTTTGTTATCAGAAACTGTCGGCTGAAATAAATGACATCAATGAAGAGGAGAATTTGATCGAGATCGACATATCGATTGGCTCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

Protein sequence

MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGFKFSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVKSFVSDRKFSPATGDLSSESECADDNFTTTEESEMEWPFSDRVYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDMSFCYQKLSAEINDINEEENLIEIDISIGSIKYSRFEIEA

Homology

[Close]

BLAST of Sed0027972 vs. NCBI nr
Match: XP_022140584.1 (uncharacterized protein LOC111011203 [Momordica charantia])

HSP 1 Score: 244.6 bits (623), Expect = 7.3e-61
Identity = 152/230 (66.09%), Postives = 168/230 (73.04%), Query Frame = 0


Query: 1   MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGFKFSS-FLLTSTALIMSIFYFSI 60
           MK KI+VEDQMA    + P SWF   +F LLCL F G +FSS F LTST LIMS+ YF+I
Sbjct: 1   MKLKIRVEDQMATPPLRNPLSWFSVFSFLLLCLGFLGLRFSSNFPLTSTILIMSMLYFAI 60

Query: 61  SKKN------PIPIHKFVQEKKEVK----SFVSDRKFSPA---TGDLSSESECADDNFTT 120
           SK+N      PIPI KFV+E++E      SF SD+KFS A   TGDL SESECADDNFTT
Sbjct: 61  SKRNSLPIPIPIPIEKFVEEEEEEAEAEVSFDSDQKFSSASAPTGDLLSESECADDNFTT 120

Query: 121 TEESEMEWPFSDRVYLDRSD--DGSISDEESLIEIALPTGHYVSNKFDEDE--EEVDDMS 180
           TEESE+EWPFSDR      D  DGSISDEESLIEIALPTGHYVS+KFD+DE  E+ DDMS
Sbjct: 121 TEESEVEWPFSDRTTAHNPDRSDGSISDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMS 180

Query: 181 FCYQKLS------------AEINDINEEENLIEIDISIGSIKYSRFEIEA 201
           F  QKLS            AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Sbjct: 181 FHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 230

[Close]

BLAST of Sed0027972 vs. NCBI nr
Match: XP_011656887.2 (uncharacterized protein LOC105435780 [Cucumis sativus] >KAE8646805.1 hypothetical protein Csa_005290 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-59
Identity = 148/231 (64.07%), Postives = 169/231 (73.16%), Query Frame = 0


Query: 1   MKFKIKVEDQMAD-LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFS 60
           MK KIKVE+QMA+ L  + P SW I LTFFLLCL F+GF+ FSSFL TS ALIMS+ YFS
Sbjct: 1   MKLKIKVENQMANTLPLRKPSSWCIVLTFFLLCLGFWGFRFFSSFLFTSIALIMSMLYFS 60

Query: 61  ISKKNPIPIHKFVQEKKEVK--------SFVSDRKFS-----PATGDLSSESECADDNFT 120
           ISK+N +PI KFVQE++E +        +F SD   S     P   DL SESECADDNFT
Sbjct: 61  ISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFT 120

Query: 121 TTEESEMEWPFSDRVY-----LDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDD 180
           TTEESE+EWP+ D  +       RSDDGSISDEESLIEIALPTGHYVS KFD+ +E+ DD
Sbjct: 121 TTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDD 180

Query: 181 MSFCYQKLS-----------AEINDINEEENLIEIDISIGSIKYSRFEIEA 201
           +SF YQKL+           AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Sbjct: 181 ISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 231

[Close]

BLAST of Sed0027972 vs. NCBI nr
Match: XP_038902685.1 (uncharacterized protein LOC120089322 [Benincasa hispida])

HSP 1 Score: 239.2 bits (609), Expect = 3.1e-59
Identity = 147/218 (67.43%), Postives = 164/218 (75.23%), Query Frame = 0


Query: 14  LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQ 73
           L  +TP SWFI+LTFFLLCL F GF+ FSSFLLTS ALIMS+ YFSISK+N +PI KFVQ
Sbjct: 5   LPLRTPLSWFIALTFFLLCLGFLGFRSFSSFLLTSIALIMSMLYFSISKRNSLPIQKFVQ 64

Query: 74  EKKEVK--------SFVSDRKFS-----PATGDLSSESECADDNFTTTEESEMEWPFSD- 133
           + +E +        +F SD   S     P TGDL SESECADDNFTTTEESE+EWP+ D 
Sbjct: 65  QVQEEEEEEDQKKLTFFSDHLKSSSVSAPTTGDLLSESECADDNFTTTEESEVEWPYFDH 124

Query: 134 RVYL----DRSDDGSISDEESLIEIALPTGHYVSNKFDE-DEEEVDDMSFCYQKLS---- 193
           R Y     DRSDDGSISDEESLIEIALPTGHYVS+KFD+ D+E+ D MSF YQKLS    
Sbjct: 125 RSYKPNNPDRSDDGSISDEESLIEIALPTGHYVSHKFDDVDDEDEDGMSFRYQKLSDFQK 184

Query: 194 -------AEINDINEEENLIEIDISIGSIKYSRFEIEA 201
                  AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Sbjct: 185 KNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 222

[Close]

BLAST of Sed0027972 vs. NCBI nr
Match: XP_008464163.1 (PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 2.6e-58
Identity = 146/232 (62.93%), Postives = 167/232 (71.98%), Query Frame = 0


Query: 1   MKFKIKVEDQMAD-LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFS 60
           MK KIKVE+QMA+    + P SWF+ LTFFL CL F GF+ FSSFL TS ALIMS+ YFS
Sbjct: 1   MKLKIKVENQMANTFPLRKPLSWFLVLTFFLRCLGFLGFRFFSSFLFTSIALIMSMLYFS 60

Query: 61  ISKKNPIPIHKFVQEKKEVK-------SFVSDRKFS-----PATGDLSSESECADDNFTT 120
           ISK++ +PI KFVQE++E +       +F SD   S     P T DL SESECADDNFTT
Sbjct: 61  ISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESECADDNFTT 120

Query: 121 TEESEMEWPFSDRVYL-----DRSDDGSISDEESLIEIALPTGHYVSNKFD--EDEEEVD 180
           TEESE+EWP+ D  +       RSDDGSISDEESLIEIALPTGHYVS KFD  +++E+ D
Sbjct: 121 TEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDED 180

Query: 181 DMSFCYQKLS-----------AEINDINEEENLIEIDISIGSIKYSRFEIEA 201
           D  F YQKLS           AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Sbjct: 181 DTPFRYQKLSDFQKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 232

[Close]

BLAST of Sed0027972 vs. NCBI nr
Match: XP_022985724.1 (uncharacterized protein LOC111483694 [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 5.8e-58
Identity = 152/229 (66.38%), Postives = 167/229 (72.93%), Query Frame = 0


Query: 1   MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGF--KFSSFLLTSTALIMSIFYFS 60
           MK KI  EDQMA    K P S FI LTFFLL LSF GF   FSSFLLT TALIMS+ YFS
Sbjct: 1   MKLKITFEDQMA-TPLKNPLSLFIVLTFFLLSLSFLGFIRFFSSFLLTFTALIMSMLYFS 60

Query: 61  ISKKNPIPIHKFV-----QEKKEVKSFVSD-RKFSPA---TGDLSSESECADDNFTTTEE 120
           ISK NP P+HK +     +E+KE+    SD R FS A   T DL SESECADDNFTTTEE
Sbjct: 61  ISKTNPFPLHKSLHHQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEE 120

Query: 121 SEMEWPFSDR---VYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDMSFCYQ 180
           SE+EWPF DR     L RSDDGSISDEESLIEIALPTGHYV++K D+D+++ DDMSFC+Q
Sbjct: 121 SEVEWPFFDRSTAKNLYRSDDGSISDEESLIEIALPTGHYVNHKSDDDDDK-DDMSFCFQ 180

Query: 181 KLS---------------AEINDINEEENLIEIDISIGSIKYSRFEIEA 201
           KLS               AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Sbjct: 181 KLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 227

[Close]

BLAST of Sed0027972 vs. ExPASy TrEMBL
Match: A0A6J1CG35 (uncharacterized protein LOC111011203 OS=Momordica charantia OX=3673 GN=LOC111011203 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.5e-61
Identity = 152/230 (66.09%), Postives = 168/230 (73.04%), Query Frame = 0


Query: 1   MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGFKFSS-FLLTSTALIMSIFYFSI 60
           MK KI+VEDQMA    + P SWF   +F LLCL F G +FSS F LTST LIMS+ YF+I
Sbjct: 1   MKLKIRVEDQMATPPLRNPLSWFSVFSFLLLCLGFLGLRFSSNFPLTSTILIMSMLYFAI 60

Query: 61  SKKN------PIPIHKFVQEKKEVK----SFVSDRKFSPA---TGDLSSESECADDNFTT 120
           SK+N      PIPI KFV+E++E      SF SD+KFS A   TGDL SESECADDNFTT
Sbjct: 61  SKRNSLPIPIPIPIEKFVEEEEEEAEAEVSFDSDQKFSSASAPTGDLLSESECADDNFTT 120

Query: 121 TEESEMEWPFSDRVYLDRSD--DGSISDEESLIEIALPTGHYVSNKFDEDE--EEVDDMS 180
           TEESE+EWPFSDR      D  DGSISDEESLIEIALPTGHYVS+KFD+DE  E+ DDMS
Sbjct: 121 TEESEVEWPFSDRTTAHNPDRSDGSISDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMS 180

Query: 181 FCYQKLS------------AEINDINEEENLIEIDISIGSIKYSRFEIEA 201
           F  QKLS            AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Sbjct: 181 FHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 230

[Close]

BLAST of Sed0027972 vs. ExPASy TrEMBL
Match: A0A1S3CMD0 (uncharacterized protein LOC103502111 OS=Cucumis melo OX=3656 GN=LOC103502111 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.3e-58
Identity = 146/232 (62.93%), Postives = 167/232 (71.98%), Query Frame = 0


Query: 1   MKFKIKVEDQMAD-LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFS 60
           MK KIKVE+QMA+    + P SWF+ LTFFL CL F GF+ FSSFL TS ALIMS+ YFS
Sbjct: 1   MKLKIKVENQMANTFPLRKPLSWFLVLTFFLRCLGFLGFRFFSSFLFTSIALIMSMLYFS 60

Query: 61  ISKKNPIPIHKFVQEKKEVK-------SFVSDRKFS-----PATGDLSSESECADDNFTT 120
           ISK++ +PI KFVQE++E +       +F SD   S     P T DL SESECADDNFTT
Sbjct: 61  ISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESECADDNFTT 120

Query: 121 TEESEMEWPFSDRVYL-----DRSDDGSISDEESLIEIALPTGHYVSNKFD--EDEEEVD 180
           TEESE+EWP+ D  +       RSDDGSISDEESLIEIALPTGHYVS KFD  +++E+ D
Sbjct: 121 TEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDED 180

Query: 181 DMSFCYQKLS-----------AEINDINEEENLIEIDISIGSIKYSRFEIEA 201
           D  F YQKLS           AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Sbjct: 181 DTPFRYQKLSDFQKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 232

[Close]

BLAST of Sed0027972 vs. ExPASy TrEMBL
Match: A0A6J1JE34 (uncharacterized protein LOC111483694 OS=Cucurbita maxima OX=3661 GN=LOC111483694 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.8e-58
Identity = 152/229 (66.38%), Postives = 167/229 (72.93%), Query Frame = 0


Query: 1   MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGF--KFSSFLLTSTALIMSIFYFS 60
           MK KI  EDQMA    K P S FI LTFFLL LSF GF   FSSFLLT TALIMS+ YFS
Sbjct: 1   MKLKITFEDQMA-TPLKNPLSLFIVLTFFLLSLSFLGFIRFFSSFLLTFTALIMSMLYFS 60

Query: 61  ISKKNPIPIHKFV-----QEKKEVKSFVSD-RKFSPA---TGDLSSESECADDNFTTTEE 120
           ISK NP P+HK +     +E+KE+    SD R FS A   T DL SESECADDNFTTTEE
Sbjct: 61  ISKTNPFPLHKSLHHQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEE 120

Query: 121 SEMEWPFSDR---VYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDMSFCYQ 180
           SE+EWPF DR     L RSDDGSISDEESLIEIALPTGHYV++K D+D+++ DDMSFC+Q
Sbjct: 121 SEVEWPFFDRSTAKNLYRSDDGSISDEESLIEIALPTGHYVNHKSDDDDDK-DDMSFCFQ 180

Query: 181 KLS---------------AEINDINEEENLIEIDISIGSIKYSRFEIEA 201
           KLS               AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Sbjct: 181 KLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 227

[Close]

BLAST of Sed0027972 vs. ExPASy TrEMBL
Match: A0A6J1FUA8 (uncharacterized protein LOC111448485 OS=Cucurbita moschata OX=3662 GN=LOC111448485 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 4.8e-58
Identity = 152/230 (66.09%), Postives = 166/230 (72.17%), Query Frame = 0


Query: 1   MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGF--KFSSFLLTSTALIMSIFYFS 60
           MK KI  EDQMA    K P S FI LTFFLL L F GF   FSSF+LT TALIMS+ YFS
Sbjct: 1   MKLKITFEDQMA-TPMKNPLSLFIVLTFFLLSLGFLGFIRFFSSFVLTFTALIMSMLYFS 60

Query: 61  ISKKNPIPIHKFV-----QEKKEVKSFVSD-RKFSPA---TGDLSSESECADDNFTTTEE 120
           ISK NP P+HK +     QE+KE+    SD R FS A   T DL SESECADDNFTTTEE
Sbjct: 61  ISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEE 120

Query: 121 SEMEWPFSDRV---YLDRSDDGSISDEESLIEIALPTGHYVSNKF-DEDEEEVDDMSFCY 180
           SE+EWPF DR     L RSDDGSISDEESLIEIALPTGHYVS+K  D+D+++ DDMSFC+
Sbjct: 121 SEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDDEDDMSFCF 180

Query: 181 QKLS---------------AEINDINEEENLIEIDISIGSIKYSRFEIEA 201
           QKLS               AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Sbjct: 181 QKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 229

[Close]

BLAST of Sed0027972 vs. ExPASy TrEMBL
Match: A0A0A0KCP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44
Identity = 112/175 (64.00%), Postives = 128/175 (73.14%), Query Frame = 0


Query: 52  MSIFYFSISKKNPIPIHKFVQEKKEVK-----SFVSDRKFS-----PATGDLSSESECAD 111
           MS+ YFSISK+N +PI KFVQE++E +     +F SD   S     P   DL SESECAD
Sbjct: 1   MSMLYFSISKRNSLPIRKFVQEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECAD 60

Query: 112 DNFTTTEESEMEWPFSDRVY-----LDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEE 171
           DNFTTTEESE+EWP+ D  +       RSDDGSISDEESLIEIALPTGHYVS KFD+ +E
Sbjct: 61  DNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDE 120

Query: 172 EVDDMSFCYQKLS-----------AEINDINEEENLIEIDISIGSIKYSRFEIEA 201
           + DD+SF YQKL+           AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Sbjct: 121 DEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 175

[Close]

BLAST of Sed0027972 vs. TAIR 10
Match: AT2G04480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35870.1); Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-19
Identity = 77/194 (39.69%), Postives = 104/194 (53.61%), Query Frame = 0


Query: 11  MADLSFKTPFSWFISLTFFLLCLSFFGFKFSSFLLTSTALIMSIFYFSISKKNPIPIHKF 70
           +A +  K PFSW   L   L  L   G +F   LLT TAL  S F+F IS    +P H  
Sbjct: 81  LASILLKRPFSWVSLLAPPL--LHILGIRFLHLLLTCTALFFSSFFFPIS----LP-HSS 140

Query: 71  VQEKKEVKSFVSDRKFSPATGDLSSESECADDNFTTTEESEMEWPFSDRVYLDRSDDGSI 130
           +Q  K+ +          AT D++ +SE   +N   T E +              DDG+I
Sbjct: 141 IQSSKQDQ---DQEGHYIATKDITGKSE---ENLEKTNEED--------------DDGAI 200

Query: 131 SDEESLIEIALPTGHYVSNKFDEDEEEV----DDMSFCYQKLSAEINDINEEENLIEIDI 190
            D+ESLIE++LP+GHY+ + ++ ++  +        F    L  EIND  EE+NLIEIDI
Sbjct: 201 PDDESLIELSLPSGHYLGHHYNSNKNHLYIHNKVQDFRLFDLLNEINDFTEEDNLIEIDI 247

Query: 191 SIGSIKYSRFEIEA 201
           SIGSIKYSRFEI+A
Sbjct: 261 SIGSIKYSRFEIKA 247

[Close]

BLAST of Sed0027972 vs. TAIR 10
Match: AT5G35870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 9.3e-14
Identity = 69/194 (35.57%), Postives = 93/194 (47.94%), Query Frame = 0


Query: 14  LSFKTPFSWFISLTFFLLCLSFFGFKFSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQE 73
           L FK P SW   L   L  L   G  FS  +LTS AL  S F+F +S + P         
Sbjct: 38  LRFKRPVSWLSFLAPPL--LHIIGLGFSQIILTSAALFFSSFFFPLSIQKP--------- 97

Query: 74  KKEVKSFVSDRKFSPATGDLSSESECADDNFTTTEESEMEWPFSDRVYLDRSDDGSISDE 133
                        +    DLS +    +   ++T         +D V  +  DDG+I DE
Sbjct: 98  -------------NSKVQDLSQQDYLGETELSSTTT-------NDIVKNNDEDDGTIPDE 157

Query: 134 ESLIEIALPTGHYVSNKFDEDEEEVDDM-------SFCYQKLSAEINDINEEENLIEIDI 193
           ESLIE++LP+GHY+ + +     + D          F   +LSAE     E++NLIEIDI
Sbjct: 158 ESLIELSLPSGHYIGHHYSTMIGKQDQKIMYNNIPDFRLIQLSAEY----EDDNLIEIDI 196

Query: 194 SIGSIKYSRFEIEA 201
           SIGSIK SRF+I+A
Sbjct: 218 SIGSIKCSRFQIKA 196

The following BLAST results are available for this feature:

BLAST of Sed0027972 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140584.1	7.3e-61	66.09	uncharacterized protein LOC111011203 [Momordica charantia]	[more]
XP_011656887.2	1.4e-59	64.07	uncharacterized protein LOC105435780 [Cucumis sativus] >KAE8646805.1 hypothetica...	[more]
XP_038902685.1	3.1e-59	67.43	uncharacterized protein LOC120089322 [Benincasa hispida]	[more]
XP_008464163.1	2.6e-58	62.93	PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo]	[more]
XP_022985724.1	5.8e-58	66.38	uncharacterized protein LOC111483694 [Cucurbita maxima]	[more]

BLAST of Sed0027972 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG35	3.5e-61	66.09	uncharacterized protein LOC111011203 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1S3CMD0	1.3e-58	62.93	uncharacterized protein LOC103502111 OS=Cucumis melo OX=3656 GN=LOC103502111 PE=...	[more]
A0A6J1JE34	2.8e-58	66.38	uncharacterized protein LOC111483694 OS=Cucurbita maxima OX=3661 GN=LOC111483694...	[more]
A0A6J1FUA8	4.8e-58	66.09	uncharacterized protein LOC111448485 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A0A0KCP7	1.4e-44	64.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1	[more]

BLAST of Sed0027972 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04480.1	2.5e-19	39.69	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35870.1	9.3e-14	35.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 165..185
None	No IPR available	PANTHER	PTHR35708	GB\|AAD25831.1	coord: 6..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027972.1	Sed0027972.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane