Sed0027949 (gene) Chayote v1

Overview
NameSed0027949
Typegene
OrganismSechium edule (Chayote v1)
DescriptionMembrane insertase YidC
LocationLG11: 1026675 .. 1027331 (-)
RNA-Seq ExpressionSed0027949
SyntenySed0027949
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCTCCTCGCCGGCGACGACGACCTCTCATCTTCTCCGACGATCTCACTGGGAGCTTTAATTTTCGGCAAAGGCCCCCGTCGCCGTCTTTCAGTCTCTTCGCCTGAGATCCCACCGACCAAAGCTTCTTGCTTCTTCTCCAGCAGATTGGAGACGGAATCCGCCGTCCAACGCCGACTACCACCGCCCAGCCCCTCTCCACTCTACAAGCAGCTCTCCTGGTCGCCGGACATCGACCGTGAGGAGGCCTGGCTCCGCCGCAAAACCAAAAACAAGATCCGCCGGAGCAAGAGCGTCACCGACGACGACCTTGAATTGGGTTTTGGGCTCAACTTGCCGGAGGTTGACCCATGACTTTGTGAAACTTTTTTCCGGCGTTGGGATTTTACCACGCCGTCAATAACCACTATAATTGCTCTCTTTCGGCCTCGTCGGCGTCTCTCTGTTCTTCCCCTGTTTCCGGCTCTGTTTCTAACAGCCCCTCCGCTATAATTAGCCACGGTAGGATACTGGATTGTTAAAATTGTAGGAATCTTATTGGGTTTTCTGATGGAAATTTTGAACTGGGTTTTGCAGGGGAGAATACGGAGACGGTGAAAGCAAGGCTGAAACAATGGTCGCAAGCGGTTGCTTGTTCAGTACGGCAGTATTGA

mRNA sequence

ATGAACTCTCCTCGCCGGCGACGACGACCTCTCATCTTCTCCGACGATCTCACTGGGAGCTTTAATTTTCGGCAAAGGCCCCCGTCGCCGTCTTTCAATTGGAGACGGAATCCGCCGTCCAACGCCGACTACCACCGCCCAGCCCCTCTCCACTCTACAAGCAGCTCTCCTGGTCGCCGGACATCGACCGTGAGGAGGCCTGGCTCCGCCGCAAAACCAAAAACAAGATCCGCCGGAGCAAGAGCGTCACCGACGACGACCTTGAATTGGGTTTTGGGCTCAACTTGCCGGAGCCCCTCCGCTATAATTAGCCACGGGGAGAATACGGAGACGGTGAAAGCAAGGCTGAAACAATGGTCGCAAGCGGTTGCTTGTTCAGTACGGCAGTATTGA

Coding sequence (CDS)

ATGAACTCTCCTCGCCGGCGACGACGACCTCTCATCTTCTCCGACGATCTCACTGGGAGCTTTAATTTTCGGCAAAGGCCCCCGTCGCCGTCTTTCAATTGGAGACGGAATCCGCCGTCCAACGCCGACTACCACCGCCCAGCCCCTCTCCACTCTACAAGCAGCTCTCCTGGTCGCCGGACATCGACCGTGAGGAGGCCTGGCTCCGCCGCAAAACCAAAAACAAGATCCGCCGGAGCAAGAGCGTCACCGACGACGACCTTGAATTGGGTTTTGGGCTCAACTTGCCGGAGCCCCTCCGCTATAATTAGCCACGGGGAGAATACGGAGACGGTGAAAGCAAGGCTGAAACAATGGTCGCAAGCGGTTGCTTGTTCAGTACGGCAGTATTGA

Protein sequence

MNSPRRRRRPLIFSDDLTGSFNFRQRPPSPSFNWRRNPPSNADYHRPAPLHSTSSSPGRRTSTVRRPGSAAKPKTRSAGARASPTTTLNWVLGSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY
Homology
BLAST of Sed0027949 vs. NCBI nr
Match: XP_022962884.1 (uncharacterized protein LOC111463251 [Cucurbita moschata] >KAG6595037.1 hypothetical protein SDJN03_11590, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

BLAST of Sed0027949 vs. NCBI nr
Match: XP_022133086.1 (uncharacterized protein LOC111005768 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

BLAST of Sed0027949 vs. NCBI nr
Match: XP_023518715.1 (uncharacterized protein LOC111782145 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

BLAST of Sed0027949 vs. NCBI nr
Match: XP_023003217.1 (uncharacterized protein LOC111496895 [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

BLAST of Sed0027949 vs. NCBI nr
Match: XP_038881139.1 (uncharacterized protein LOC120072737 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-05
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 77  SAGARASPTTTLNWVLGSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SA   +SP +  + V  S+  SP+AIIS+GEN +TVKARLKQW+Q VACSVRQY
Sbjct: 103 SASLCSSPVS--DSVSPSSVNSPAAIISYGENPQTVKARLKQWAQVVACSVRQY 154

BLAST of Sed0027949 vs. ExPASy TrEMBL
Match: A0A6J1KLU9 (uncharacterized protein LOC111496895 OS=Cucurbita maxima OX=3661 GN=LOC111496895 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

BLAST of Sed0027949 vs. ExPASy TrEMBL
Match: A0A6J1BU15 (uncharacterized protein LOC111005768 OS=Momordica charantia OX=3673 GN=LOC111005768 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

BLAST of Sed0027949 vs. ExPASy TrEMBL
Match: A0A6J1HIC1 (uncharacterized protein LOC111463251 OS=Cucurbita moschata OX=3662 GN=LOC111463251 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

BLAST of Sed0027949 vs. ExPASy TrEMBL
Match: A0A6J1IVC7 (uncharacterized protein LOC111478729 OS=Cucurbita maxima OX=3661 GN=LOC111478729 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIIS GEN +TVKARLKQW+Q VACSVRQY
Sbjct: 122 SPAAIISLGENPQTVKARLKQWAQVVACSVRQY 154

BLAST of Sed0027949 vs. ExPASy TrEMBL
Match: A0A5D3CRC3 (Membrane insertase YidC OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004830 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 77  SAGARASPTTTLNWVLGSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SA   +SP +  + V  S   SP+AIISHGEN + VKARLKQW+Q VACSVRQY
Sbjct: 103 SASLCSSPVS--DSVSPSADGSPAAIISHGENPQMVKARLKQWAQVVACSVRQY 154

BLAST of Sed0027949 vs. TAIR 10
Match: AT4G33985.1 (Protein of unknown function (DUF1685) )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 80  ARASPTTTLNWVL--GSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           +R S T++L+ +   G    S + I+  G++ ET+K RLKQW+Q VACSV+Q+
Sbjct: 97  SRLSRTSSLSSIASEGENSNSSTTIVDQGDDPETMKLRLKQWAQVVACSVKQF 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022962884.13.3e-0684.85uncharacterized protein LOC111463251 [Cucurbita moschata] >KAG6595037.1 hypothet... [more]
XP_022133086.13.3e-0684.85uncharacterized protein LOC111005768 [Momordica charantia][more]
XP_023518715.13.3e-0684.85uncharacterized protein LOC111782145 [Cucurbita pepo subsp. pepo][more]
XP_023003217.13.3e-0684.85uncharacterized protein LOC111496895 [Cucurbita maxima][more]
XP_038881139.11.7e-0561.11uncharacterized protein LOC120072737 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KLU91.6e-0684.85uncharacterized protein LOC111496895 OS=Cucurbita maxima OX=3661 GN=LOC111496895... [more]
A0A6J1BU151.6e-0684.85uncharacterized protein LOC111005768 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1HIC11.6e-0684.85uncharacterized protein LOC111463251 OS=Cucurbita moschata OX=3662 GN=LOC1114632... [more]
A0A6J1IVC73.1e-0581.82uncharacterized protein LOC111478729 OS=Cucurbita maxima OX=3661 GN=LOC111478729... [more]
A0A5D3CRC33.1e-0561.11Membrane insertase YidC OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT4G33985.11.0e-0543.40Protein of unknown function (DUF1685) [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027949.1Sed0027949.1mRNA