Sed0027948 (gene) Chayote v1

Overview


Name	Sed0027948
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L18
Location	LG11: 3699788 .. 3707831 (+)
RNA-Seq Expression	Sed0027948
Synteny	Sed0027948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTGGAAAGGGAAGAAGCAGATTATGGGTTGTGATGGTTCGGGTCGGGTTGGCTTGACCCGGATAAGTCGGGCTCGCTATGCGATGTTGTTCCGACGTGTCGTAATGTGTCAGAGAATTGTCGGAAGGTGGCTCTACGACGCTTTTTTGTCTGGGCTGGGCCCGGCCCAACTGATGGTGTCGAAAGTGGAATTACGATTTGTCGTTCGAAATGAATCAAACAATATTTTAGGAGTAATTTATAAGCATTATCCACTTGTGTTAATTATAATTGCTTGGCCCCACTTCGAGTAGAATTATAAGTTTTTCACTTACGAAATATGATATCATAATACTTATAAGTTACATCTTATTGGTCAATTATGTGAGTTACAACCAATTTTTGTAACATATGATATTGTAAATCTTATGAGTTTTAAAAATATTCGACAATTCAAACATATTAGACTCAACCAATCTCAAAAAAACCCAATTTCCTTATTCCTTCTTCTCAATTTCCTTTCTTAGAAACCTTAATGTGATTTATATATAGTATAAGGAATAATCTATTTAGGCCGAATAAGCCCACACTCTAACAACATCAAATTATATGCATCTATGCCTTTGAACTATGGACATATTCGCCTCTGAAAGCTTTGTAAGTTTAGTAAGAAACAATCCGCCTATCAAAACTTAAATGTTCATAGGTGGTTGAGGCAACCACAATTTTGAATTTTTTTTTTTTCGTGATAAATAAAACACATAATGAAGAAGAATGATTTTTTTTTTGAGAAATATCCCAACATAAAAAATTAAGAAGATCTCCTAACAATTTATAAGATAGGTGTATTATTCCTCTCATCACAAATTGATTTTAAGATGGATTTCTACACTATCTAATATGGTATCAGAGTTAAGCTCTGGACTTAGCGATGTGGAGGAAGGCTCTCGGTATGGAAACATGAAGGTAATCGTATGATTTGGGTGTACTTTATTTGATGGGAAGATTGTTGGGTAAATAAAATATCACACACTGCTAAGTTAGGAGGAAGACTTTAGGTATATATGGAGGGGACAACACCTCCATTAATATGACACATTTTGGATGCAAACAAAAAAAAAAGGTCATGATGGGTGATTTCCAAAGTGGACAATATCATATCAACATGGAGGATTTGTGGATATTCGTTGTCCCTAACAAGTGGTATCAGAGCTGAGATCTTGATTAGCGATGTTGGTGATCAATTGACTCTCGTTGAAGAACAAAAAAATGGCAAGTCTCGTATGACTCGATGTCCTTTGTTCGAGTGGAGGTCTCCCTGATATAGACAAAGTCGATAAGATTCAATGGACTCGAAGTGTACTTTGTTTGAGGGGAGGATTATTAGATAAACAAAGTATCTCATATTACTAAATTAGGAGAAAGATCTTGTGTATATAAGAAAGAGACAATACCTCCATTGATATGAGACATTTTTTGTGTAGACAAAAAAAAAGTCACGATGGGTGATTTCTATAGTGGACAATATCATATCAATGTGGGGGATTTATGGATATTCGTTGTCTCTATCAAGTGGTACTAGAGCTCGACTCTTGATTTAGTGATGTTAGCGATCAAGACTCCCGATGAAAAATAAAGAAGTGGCGAGTCTCATATGGTTCGGTGTATTCTGTTCGATGGAGGTCTTATAGACAAAAATCTATAAGATTCGAAGGATTTAAAGTGTACTTTGTTTGAGGGGAAGATTGTTGTGTAAACAAAGTATCACACGATGCTAACTTAAGAGGAAGATCTTAGATATACAGGGAGGGAATAACACTTTCATTGATATGAACTCTTCTAAAAGATACCAAAAAACAAAGGAGGGTAATTTTAAAAGTAGACAATATCATATCAATGTAGACAGTCGTGGTTGTTCGTTGTCCTCTAACAAAAAAGTTGCACCATTTTGAGGGGGCAATTTATAAGATAGGTAGACTATTCTACGATCATTGAAAATTTTTATTAGTAATTTTAATTGAGGAATATTTTTAAAAATACGTTACGATGTGTTCGGGCATTATAAACGTTGAGTTATATAAATGGCGAGTTCATATAACTTGTGTTTGAAGTGTATATTATTATAATATAAGTTATGATAAACTATTTGATTGACTAATAAAAGTAAAACTCTACTGAAATCTTATACAACCTAATAACCATGAGGTTATTGATTTGAATTCTCCTTCCCCAATATTAATTTATAGGGTAAAATACCATTTTGGTCCCTAAACTATAATGTTTGTTCCATTTTGATCCTTCAACTTTCAAAAGTCCAATTTTAGTCCTTGAACTATTATTTTTGTTCCACTTTGGTCCCTAAACTTTTAAATTTCCAATTTCGATCCTTGAACTTTCTAAAAAAATTTAAAATAGTCCTTGAGTTAAACAAAAAAAAATTAATCATAATTAAAAGTAGACGAGGTGGCAATAAAATAATAATAAATATAAACGGCTCTTAAAAGAGTTGGAAAAATGGTAGCTTCTTCTCTTCTAGGAATCTAATCATGAAAAGAAATTAGGATTGAAGTTTATTAAATGCAACGTCTCTAATAAATACATGACCTCCATTTAAAAATGGAAATCAAGTCGTGGATGTCATAGGTGGTGATTATGTGTTTAGGCAACAACGGCGGAATTAAAAACAATTTTGGTGTTCTTAGGGTGAAGTAAGAGCCCAGATTTGAAACACAGTGCGCGCGGTTAGTTGGCAATATTCTAAACAAAACCTGCATTTCAAAAGAGAGAATCAACATCAATCCTCCACTTTCCACCACCAAAAGCTTCTCCGTTGAATGTGTTGAACAATTCGGTTGACCCATCAACGAACAAGATGAGTTCAAATGATAGAAAGCAAACAAATATATGAAAGGAAGCGAGAATGCACACACAATTTTAAGTGGTTCAACCCATGGCGGAATTACTCTATGACCTCCATTGGAGGTCATGTATTTATTAGGGACGTTGCATTTAATAAACTTCAATCTTAATTTTCTTCGCCAATGGATTTGTAGAAGAGAAGAAGCTACCATTTTTCAACTCTTTTTATGCTCTGTTTTTTTGAAGAGAAGTTTAGAGAGAGAGTCGAGAAGAGTAAAGAAGATGAAAAATTATATTTATTATTATTATTTTATTACCACCTCATCTACTTTTAATTATGGTTAATTTTTTTTGTTTAACTCAATATCGAAATTAGAAATTTGAAAGTCTAAGAACCAAAGTGGAATAAAAATGATAGTTTAAAGACTAAAATTAGACGTTTGAAAGTTCATGAACGAAATGGAACAACTAAGGACCAAAATAGTATTTTACCCTAATTTATATAAAAGAAATACATTTGATTGTTGATTGTTATAACTTAACCGTAATAAACGTAACGGTGTTGAAGCCACTTAAAATAAAGTTTAGAGATTTTATTAAAAATAAAGTTAAGTAATTTTAGTAATGGATGGAACTAAATTAATTCATAATCATTCATACTTTTTTTTTTGTAAGTTCTATCCTTCTATACTTAATTTATGTGATTAGTATGTAATGATTAAAGTAATTCTTTTGGTAAATTGTAAATTTGATTCATATGGACCAACATGAATAGAGATGTCCACGGGGCGGGGACGAGGATGGCTTTATCGTTCCCATCCCCACTACTCATTTCAATCCCCATCCTTGCGAATTCATCGTAAAATTTTGAGGGGAACGGGGCGGGGATTCACCGCGGGTAATTCACGAGAACCGGGTTCCCCACGGAAAATTATTTCTCATTTAACTCCTCTTTTTTTCTTTTTTTATTCTTAACTTTTTGCAAACTTTCTCTATTGTTAACTCAATTCACTAAATCTTATATAATTTTTTCAATATTAAAAGAAATGTTTATTGCTTTTTAATTAAATAATTAATTAGGTAAGGAAAATATTAATCCAAATAAATATTTTTATTACTTTATGATTATTAATGTATTTAGAAAAATTAAAAAAAAATAAAATAAATATATATATAATATGGACGGGGCGGGGCGGGGAAACGGGATGGGGAATATCTCCATCCCCATTTAGCTTGTTGGGAATTTTTCATCCCCACTCACTTCCCCATTCACGGCTTATTCGGGGATTCACCGCTCATATAGGGGCGGGCCCCCGATCCCATGGGAAAAATGGACATCTCTAAATATGAGCAGTGGCTCAGCGGCATTAGTGTATGTTCATTGACCAAAAGGTCTTGGGTTCAAGTCCCCACCTTCAATTGATGTAATCTAAAAAAAAAAAAAAAAATTGATTCATATGGTGTAAAAAGAACATCTTAAATCTTGTCTATATAATTTATTTTAAAGGAAGATTGTAATGGATGAATAATTATAAATGTAGTCAAATTTAAAAATATTTATATCAATTATCATAAATACTGTTGAATACTTTATTACTCATTTATATAGGTTTATTGATACATTAATTCTAAAAAAATATATAAATTTATTAATACATTATTATGTATTATTTTTTTTTAAAGCACATTTTTTTTTTTTTTGAAAGCACATTATTATGTATTATTAATACCATAGTATTAATACCTATGACTATGATTGTTAATTCTTTTTAAAGTGATTATATTTGTGATTATTTTATGAATTTGATCATACTAATACCCTACTTCTCTTGTTAGCCTTTACCTATATTATTATTGTTGACACATAAATAATAAACATTTACACATTTTATTAGTGACCAATGGTAGATGCTATATTTTAGATTTTATCAAATCGTAGGAACAATTTTAAGTTCTTCAAACTTAAAACTAAATTAAAACTTTTATAATTTTTTTTGGAGACAAATTAAAACTTTTATAATTGATAAAGACTAAATTTATAATTTATCATAATTGTTATTAGATAATTAACATAAATCATAATCCTTTACAAAATAAATGCAGAAGCTATAAAACTATTTGTTATTGATTTAAAAAAAAAAAAAAACTATTTGTTTTTTTTTAGATTACATTAATGAGGGGATTCGAAACTCAAGACTTTATGGTCATTTGATTTACATTATGTTGCTGAATTACTTTTATTGGGGCTGTTTGTTTGCCATATTTAGGTAGGATTTATTAACTCCTCCTCCAAAACTTACATTCAAACGATTTTTAGTACATTTTCCTCATTTTGACTTTTAAAAATATCTCTCATTTTTAACCATTCATTTTTAATAATTCATTTATAACTACTCAATCATTTTTACTTATTCTTTTCAAATCAATCAAAATAACTTATTTTTAATAATTTCTTTTTAACTATTCATTTTAAATCTATATACAAACAAAGTTTTTACTCTAACTTCTCTATACAAAAACTACATCCAAATAATTTTTTGACTACAATTCTCAATTTTTAACTACTCAACCTAACTTCTCAATAAAACTCCTTAAGCTAAATCCTATTTAAATAAAACAGCCCCATTGGCAACTATAAATAGTTTAAAAATATGTGAATATTTACTATAATCTTTCATTGCAGAATGATGAATTGTATAAACCCTAATTTTCATAAAAGCACACGTGTACGGCTGAGATTCAAGTTCTGGAATTAGGTTAAACGCGACAGCCTCGTCTTCCATAAAAGGGTCATCCAAAACCCTAACTCCATTTCCCTTCACACTCAGCGCAGTCGCCGTCGCCGCCGCCGCCGCAGCGAAGGGAAGGGTTTCTTCATCGAAAGCTCCAATGGTCTGTTTCATTTTCTCTCTCAACCAATTTCTCTGCCTCCAATGGCGTAGATCAATGTCTGAAATCTGTTCTTCGTCTTGTACAGGGGATCGATCTTGTAGCAGGAGGCAAGAGCAAGAAGACCAAGAGGACTGCCCCCAAGTCCGACGATATCTACCTCAAGCTCCTCGTCAAGGTTAGTTTTTCCAATCATCACTGGTTGGAATGAGTACTTTGCATTCACAGATTGGTTTTTGTGGAGAATGAAGATGAATTCTTATGGGGGTTTTCCCCTTTTAAATGAATAATTATGATATTGTGAATGTGATTGAATTGGGAGTCGAGTTTAAATCTAATTCTGTAAGCATAGTATGGAACTTCCGCCATTTTAGTTTTACGTGTTTGTTCTGCTTGTGTTTTGGTTTATTGAGTTTACATTCTCAAAAAACCTAATTGCGTTTGAATTTGAAATTTAGGTTGATATACATTTAGTGGGGAGTTTATATGCAGTGATGATATCTATGTATCCCAGCTCATTATGAGACCTTTTGTAGGTCCGGGAATGAACTAGTTTCACATGTGTCTGAGCTCTGGTTTTGAGTTAAAATTAATTACTAATTTTGGAAAATGAAGTTGAAGATGTTTATCAGTGTTAAGTTTTATCCAAATAAAGAACAATCATGTAGTGGTTTAACACTTTAACTTAATTATTGTGAAATTTAATGGGGAGTTGAGCATTTTCTGGAACTCCAGACGTTGTTGTTCTTGCGCATGCATTAGTTTTGGTCTCTTGAGTTTATATTTTTAGACCTAATTGTGTTTGAAATCAAGTTATATATGAAAGTAACTGTAATGGAGGGGGGAATGTGTGTGCAGTGATGACATCTGTGTATCCCAGCTCATTATGAGATCTTTCGTAGGTCCAGGAATGAACTAGTTTCACATTTATCTGAGCTCTGGTTTAGAGTTAAACTTTCTTATCAATTTTGATCAATGATGTTAAAGTTCACATTTTTTAACCTAAGTGTGTTTGAAATCTTGTTTAATGAGTAGGGGGAAGTTTATGTGCAGTGATGATGTCTGTGTATCCCAGCTCATTATGAGATCTTCCGTAGGTCCGGGAATGAACTAGTTTCACATTTATCTGAGCCTTAATTTAGATTTTCACTTTCTAATTCAATTTGAACAATGAAGTAAATAAAAGTTGAAGATGTTGATCAATGGTGAGTAGTAAACCTTGATTGAGAAGTTCTAGATTTGATTCCTACTGCCTGATAGGAGATGCAGGCTGTTGTTCCCTGTGATGCTTCATTTTTAACCATGCTAATACTGATCACATGATGATTGATCTACTTATGACTCTGAGGGAGCTAATCTACACTCTTGAGTTCATTATTTTTGGATGAGCAATGTATTTTGTTTTCATATCTATTATTTTATCTTTTTTTTCCTAAGCTCAGCAGTGTGCTGTGGACATTTTCAAAACTAATTATATGCATGTATATGTTCTGTAGATTTATACTTATTTGGATGGCTTAAATGATAGATCTTTATCTTGTTAATTGATTTCAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCAGACTTATAAAGTTCATGAAGGGAAAGGTGTGCGCTTCTATTTATATTCTTCACCTTTGCAGGAGAGTGTTTGTTCCATATTTTTCATTGTCTAAATTCCCTGTTGACATGGTATATAGGAAGATAAAATTGCTGTCATTGTTGGAACCGTGACTGATGACATTCGTGTTTACGAAGTACCAGCACTGAAAGTTACAGCCTTGAGGTTTACCGAGACCGCTAGGGCAAGGATTGAGAAGGCTGGTGGTGAGTGCTTGACCTTTGACCAGCTTGCTCTGAGAGCTCCTCTCGGCCAGAGTACGGTACGACTACGAGTCCCCTCTTAAACACATCCTCTTACTGTTCAGTGACTGATACATATATTTTTGGCACCTGAAATTTATACAAGCATTCCATCCGTTGCTCTTTCTTATAAGCACAATCTTTGGTTCAACTAACAACACACACAATTGTGTTTATATTTTATCTTAAAATCTTTGGTTGATTTTGGTTCTAAAGGTTCTTCTTCGTGGACCAAAGAATGCCCGTGAAGCCGTGAAGCACTTCGGTCGTGCTCCTGGTGTGCCTCACAGCAACACGAAACCGTATGTGAGGTCGAAGGGAAGGAAGTTCGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGTTACAGAAATTAA

mRNA sequence

ATGAACTGGAAAGGGAAGAAGCAGATTATGGGTTGTGATGGTTCGGGTCGGGTTGGCTTGACCCGGATAAGTCGGGCTCGCTATGCGATGTTGTTCCGACGTGTCGTAATGTGTCAGAGAATTGTCGGAAGGTGGCTCTACGACGCTTTTTTGTCTGGGCTGGGCCCGGCCCAACTGATGGTGTCGAAAGTGGAATTACGATTTGTCGTTCGAAATGAATCAAACAATATTTTAGGATCGCCGTCGCCGCCGCCGCCGCAGCGAAGGGAAGGGTTTCTTCATCGAAAGCTCCAATGGTCTGTTTCATTTTCTCTCTCAACCAATTTCTCTGCCTCCAATGGCGTAGATCAATGTCTGAAATCTGTTCTTCGTCTTGTACAGGGGATCGATCTTGTAGCAGGAGGCAAGAGCAAGAAGACCAAGAGGACTGCCCCCAAGTCCGACGATATCTACCTCAAGCTCCTCGTCAAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCAGACTTATAAAGTTCATGAAGGGAAAGGAAGATAAAATTGCTGTCATTGTTGGAACCGTGACTGATGACATTCGTGTTTACGAAGTACCAGCACTGAAAGTTACAGCCTTGAGGTTTACCGAGACCGCTAGGGCAAGGATTGAGAAGGCTGGTGGTGAGTGCTTGACCTTTGACCAGCTTGCTCTGAGAGCTCCTCTCGGCCAGAGTACGGTTCTTCTTCGTGGACCAAAGAATGCCCGTGAAGCCGTGAAGCACTTCGGTCGTGCTCCTGGTGTGCCTCACAGCAACACGAAACCGTATGTGAGGTCGAAGGGAAGGAAGTTCGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGTTACAGAAATTAA

Coding sequence (CDS)

ATGAACTGGAAAGGGAAGAAGCAGATTATGGGTTGTGATGGTTCGGGTCGGGTTGGCTTGACCCGGATAAGTCGGGCTCGCTATGCGATGTTGTTCCGACGTGTCGTAATGTGTCAGAGAATTGTCGGAAGGTGGCTCTACGACGCTTTTTTGTCTGGGCTGGGCCCGGCCCAACTGATGGTGTCGAAAGTGGAATTACGATTTGTCGTTCGAAATGAATCAAACAATATTTTAGGATCGCCGTCGCCGCCGCCGCCGCAGCGAAGGGAAGGGTTTCTTCATCGAAAGCTCCAATGGTCTGTTTCATTTTCTCTCTCAACCAATTTCTCTGCCTCCAATGGCGTAGATCAATGTCTGAAATCTGTTCTTCGTCTTGTACAGGGGATCGATCTTGTAGCAGGAGGCAAGAGCAAGAAGACCAAGAGGACTGCCCCCAAGTCCGACGATATCTACCTCAAGCTCCTCGTCAAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCAGACTTATAAAGTTCATGAAGGGAAAGGAAGATAAAATTGCTGTCATTGTTGGAACCGTGACTGATGACATTCGTGTTTACGAAGTACCAGCACTGAAAGTTACAGCCTTGAGGTTTACCGAGACCGCTAGGGCAAGGATTGAGAAGGCTGGTGGTGAGTGCTTGACCTTTGACCAGCTTGCTCTGAGAGCTCCTCTCGGCCAGAGTACGGTTCTTCTTCGTGGACCAAAGAATGCCCGTGAAGCCGTGAAGCACTTCGGTCGTGCTCCTGGTGTGCCTCACAGCAACACGAAACCGTATGTGAGGTCGAAGGGAAGGAAGTTCGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGTTACAGAAATTAA

Protein sequence

MNWKGKKQIMGCDGSGRVGLTRISRARYAMLFRRVVMCQRIVGRWLYDAFLSGLGPAQLMVSKVELRFVVRNESNNILGSPSPPPPQRREGFLHRKLQWSVSFSLSTNFSASNGVDQCLKSVLRLVQGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRNSRGYRN

Homology

[Close]

BLAST of Sed0027948 vs. NCBI nr
Match: XP_022965965.1 (60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.0 bits (894), Expect = 4.3e-92
Identity = 181/185 (97.84%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS+TKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 308 SRGYR 313
           SRGYR
Sbjct: 182 SRGYR 186

[Close]

BLAST of Sed0027948 vs. NCBI nr
Match: KAG6586240.1 (60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 348.6 bits (893), Expect = 5.6e-92
Identity = 180/185 (97.30%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           ISLSRLIKFMKGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS+TKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 308 SRGYR 313
           SRGYR
Sbjct: 182 SRGYR 186

[Close]

BLAST of Sed0027948 vs. NCBI nr
Match: XP_022999399.1 (60S ribosomal protein L18-2 [Cucurbita maxima])

HSP 1 Score: 347.8 bits (891), Expect = 9.6e-92
Identity = 180/185 (97.30%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFN+VILKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNSVILKRLFMSKVNKPP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS+TKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 308 SRGYR 313
           SRGYR
Sbjct: 182 SRGYR 186

[Close]

BLAST of Sed0027948 vs. NCBI nr
Match: KAG7021075.1 (60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.1 bits (889), Expect = 1.6e-91
Identity = 180/185 (97.30%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           ISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS+TKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 308 SRGYR 313
           SRGYR
Sbjct: 182 SRGYR 186

[Close]

BLAST of Sed0027948 vs. NCBI nr
Match: XP_023537655.1 (60S ribosomal protein L18-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347.1 bits (889), Expect = 1.6e-91
Identity = 178/185 (96.22%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           ISLSRL+KFMKGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLVKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS+TKPYVR+KGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKRN 181

Query: 308 SRGYR 313
           SRGYR
Sbjct: 182 SRGYR 186

[Close]

BLAST of Sed0027948 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 9.7e-87
Identity = 160/185 (86.49%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           +SLSRL++FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHSNTKPYVR KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRK 181

Query: 308 SRGYR 313
           SRG++
Sbjct: 182 SRGFK 186

[Close]

BLAST of Sed0027948 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 315.8 bits (808), Expect = 5.3e-85
Identity = 157/185 (84.86%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           +SLSRL++FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS++KPYVR+KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRK 181

Query: 308 SRGYR 313
           SRG++
Sbjct: 182 SRGFK 186

[Close]

BLAST of Sed0027948 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 6.1e-81
Identity = 155/183 (84.70%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 130 DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPIS 189
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 190 LSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 249
           LSRLIK+M+GKE KI V+VG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 250 QLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRNSR 309
           QLALR PL   TVLLRGPKNAREAVKHFG APGVPHS+TKPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 310 GYR 313
           G+R
Sbjct: 181 GFR 182

[Close]

BLAST of Sed0027948 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 279.3 bits (713), Expect = 5.5e-74
Identity = 144/186 (77.42%), Postives = 163/186 (87.63%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK P
Sbjct: 2   GIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           +SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLT
Sbjct: 62  LSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLT 121

Query: 248 FDQLALRAPL-GQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKR 307
           FDQLAL  P   ++TVLLRGPKN REAVKHFG APGVPHS+TKPYVR  G+K E ARG+R
Sbjct: 122 FDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRR 181

Query: 308 NSRGYR 313
            SRG++
Sbjct: 182 RSRGFK 187

[Close]

BLAST of Sed0027948 vs. ExPASy Swiss-Prot
Match: P35980 (60S ribosomal protein L18 OS=Mus musculus OX=10090 GN=Rpl18 PE=1 SV=3)

HSP 1 Score: 244.6 bits (623), Expect = 1.5e-63
Identity = 125/188 (66.49%), Postives = 152/188 (80.85%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           G+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT S FN V+LKRLFMS+ N+PP
Sbjct: 2   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 61

Query: 188 ISLSRLIKFMK--GKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGEC 247
           +SLSR+I+ MK  G+E+K AV+VGTVTDD+R+ EVP LKV ALR +  AR+RI KAGG+ 
Sbjct: 62  LSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 121

Query: 248 LTFDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGK 307
           LTFDQLAL +P G+ TVLL GP+  RE  +HFG+APG PHS+TKPYVRSKGRKFERARG+
Sbjct: 122 LTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 181

Query: 308 RNSRGYRN 314
           R SRGY+N
Sbjct: 182 RASRGYKN 188

[Close]

BLAST of Sed0027948 vs. ExPASy TrEMBL
Match: A0A6J1HQ85 (60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 2.1e-92
Identity = 181/185 (97.84%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS+TKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 308 SRGYR 313
           SRGYR
Sbjct: 182 SRGYR 186

[Close]

BLAST of Sed0027948 vs. ExPASy TrEMBL
Match: A0A6J1KGZ8 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 4.7e-92
Identity = 180/185 (97.30%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFN+VILKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNSVILKRLFMSKVNKPP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS+TKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 308 SRGYR 313
           SRGYR
Sbjct: 182 SRGYR 186

[Close]

BLAST of Sed0027948 vs. ExPASy TrEMBL
Match: A0A6J1G525 (60S ribosomal protein L18-3 OS=Cucurbita moschata OX=3662 GN=LOC111450785 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.0e-91
Identity = 180/185 (97.30%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           ISLSRLIKF KGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS+TKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 308 SRGYR 313
           SRGYR
Sbjct: 182 SRGYR 186

[Close]

BLAST of Sed0027948 vs. ExPASy TrEMBL
Match: A0A6J1FC57 (60S ribosomal protein L18-3-like OS=Cucurbita moschata OX=3662 GN=LOC111444066 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 3.0e-91
Identity = 179/185 (96.76%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDLVAGGKSKK KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           ISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS+TKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 308 SRGYR 313
           SRGYR
Sbjct: 182 SRGYR 186

[Close]

BLAST of Sed0027948 vs. ExPASy TrEMBL
Match: A0A5A7U3L4 (60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001430 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 5.1e-91
Identity = 178/185 (96.22%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           ISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS+TKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 308 SRGYR 313
           SRGYR
Sbjct: 182 SRGYR 186

[Close]

BLAST of Sed0027948 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 321.6 bits (823), Expect = 6.9e-88
Identity = 160/185 (86.49%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           +SLSRL++FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHSNTKPYVR KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRK 181

Query: 308 SRGYR 313
           SRG++
Sbjct: 182 SRGFK 186

[Close]

BLAST of Sed0027948 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 315.8 bits (808), Expect = 3.8e-86
Identity = 157/185 (84.86%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 128 GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 187
           GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61

Query: 188 ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 247
           +SLSRL++FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 248 FDQLALRAPLGQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRKFERARGKRN 307
           FDQLALRAPLGQ+TVLLRGPKN+REAVKHFG APGVPHS++KPYVR+KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRK 181

Query: 308 SRGYR 313
           SRG++
Sbjct: 182 SRGFK 186

[Close]

BLAST of Sed0027948 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 196.1 bits (497), Expect = 4.4e-50
Identity = 100/134 (74.63%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 180 MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 239
           MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 240 KAGGECLTFDQLALRAPL-GQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRK 299
           KAGGECLTFDQLAL  P   ++TVLLRGPKN REAVKHFG APGVPHS+TKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 300 FERARGKRNSRGYR 313
            E ARG+R SRG++
Sbjct: 121 IEIARGRRRSRGFK 134

[Close]

BLAST of Sed0027948 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 196.1 bits (497), Expect = 4.4e-50
Identity = 100/134 (74.63%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 180 MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 239
           MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 240 KAGGECLTFDQLALRAPL-GQSTVLLRGPKNAREAVKHFGRAPGVPHSNTKPYVRSKGRK 299
           KAGGECLTFDQLAL  P   ++TVLLRGPKN REAVKHFG APGVPHS+TKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 300 FERARGKRNSRGYR 313
            E ARG+R SRG++
Sbjct: 121 IEIARGRRRSRGFK 134

The following BLAST results are available for this feature:

BLAST of Sed0027948 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965965.1	4.3e-92	97.84	60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal prote...	[more]
KAG6586240.1	5.6e-92	97.30	60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022999399.1	9.6e-92	97.30	60S ribosomal protein L18-2 [Cucurbita maxima]	[more]
KAG7021075.1	1.6e-91	97.30	60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023537655.1	1.6e-91	96.22	60S ribosomal protein L18-2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0027948 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940B0	9.7e-87	86.49	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
P42791	5.3e-85	84.86	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
O65729	6.1e-81	84.70	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	5.5e-74	77.42	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
P35980	1.5e-63	66.49	60S ribosomal protein L18 OS=Mus musculus OX=10090 GN=Rpl18 PE=1 SV=3	[more]

BLAST of Sed0027948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQ85	2.1e-92	97.84	60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=...	[more]
A0A6J1KGZ8	4.7e-92	97.30	60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=...	[more]
A0A6J1G525	1.0e-91	97.30	60S ribosomal protein L18-3 OS=Cucurbita moschata OX=3662 GN=LOC111450785 PE=3 S...	[more]
A0A6J1FC57	3.0e-91	96.76	60S ribosomal protein L18-3-like OS=Cucurbita moschata OX=3662 GN=LOC111444066 P...	[more]
A0A5A7U3L4	5.1e-91	96.22	60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Sed0027948 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27850.1	6.9e-88	86.49	Ribosomal protein L18e/L15 superfamily protein	[more]
AT3G05590.1	3.8e-86	84.86	ribosomal protein L18	[more]
AT2G47570.1	4.4e-50	74.63	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	4.4e-50	74.63	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 128..312 e-value: 4.7E-93 score: 309.8
None	No IPR available	GENE3D	3.100.10.10		coord: 127..313 e-value: 4.6E-98 score: 328.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..313
None	No IPR available	PANTHER	PTHR10934:SF19	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 128..313
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 128..313
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 146..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027948.1	Sed0027948.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome