Sed0027933 (gene) Chayote v1

Overview
NameSed0027933
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG13: 22958315 .. 22958545 (-)
RNA-Seq ExpressionSed0027933
SyntenySed0027933
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCTCGGCTGGTTTTGTTAATGGTTGTTTTCACTCTTCTTGTCTCTGGAAAAAACCAAGTGACAATGGGGTTTGTCGGCATCGATCCACATCCACCGTCAAGAATGCTGAACCACCAAATGCAGCTGTTGCCACCGCCATCATCGTCATGGAGGGACTCATTCCATGCTCTCTTTGCAAGCAAGAGGAAGGTCCCGAACACTTCAGATCCACTTCATAATCGTTGA

mRNA sequence

ATGAAAGCTCGGCTGGTTTTGTTAATGGTTGTTTTCACTCTTCTTGTCTCTGGAAAAAACCAAGTGACAATGGGGTTTGTCGGCATCGATCCACATCCACCGTCAAGAATGCTGAACCACCAAATGCAGCTGTTGCCACCGCCATCATCGTCATGGAGGGACTCATTCCATGCTCTCTTTGCAAGCAAGAGGAAGGTCCCGAACACTTCAGATCCACTTCATAATCGTTGA

Coding sequence (CDS)

ATGAAAGCTCGGCTGGTTTTGTTAATGGTTGTTTTCACTCTTCTTGTCTCTGGAAAAAACCAAGTGACAATGGGGTTTGTCGGCATCGATCCACATCCACCGTCAAGAATGCTGAACCACCAAATGCAGCTGTTGCCACCGCCATCATCGTCATGGAGGGACTCATTCCATGCTCTCTTTGCAAGCAAGAGGAAGGTCCCGAACACTTCAGATCCACTTCATAATCGTTGA

Protein sequence

MKARLVLLMVVFTLLVSGKNQVTMGFVGIDPHPPSRMLNHQMQLLPPPSSSWRDSFHALFASKRKVPNTSDPLHNR
Homology
BLAST of Sed0027933 vs. NCBI nr
Match: KAE8649873.1 (hypothetical protein Csa_012848, partial [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 41/72 (56.94%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 13 TLLVSGKNQVTMGFVG---IDPHPPSRML---NHQMQLL--PPPSSSWRDSFHALFASKR 72
          TLLVSG N+ TMG      ID HP S M       +QLL  PPP S     F+ALFASKR
Sbjct: 2  TLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRS---HLFNALFASKR 61

Query: 73 KVPNTSDPLHNR 77
          KVPNT DP+HNR
Sbjct: 62 KVPNTWDPIHNR 70

BLAST of Sed0027933 vs. NCBI nr
Match: KDP41663.1 (hypothetical protein JCGZ_16070 [Jatropha curcas])

HSP 1 Score: 60.1 bits (144), Expect = 9.7e-06
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 4  RLVLLMVVFTLLVSGKNQVTMGFVGIDPHPPSRMLNHQMQLLPPPSSSWRDSFHALFASK 63
          ++++L+++++LLVSG+ + TM     D   P R   HQ           R SF  LF+SK
Sbjct: 10 KIIVLILLYSLLVSGEKEETMAVTHADDKQPRRQEKHQ---------RLRSSFDVLFSSK 69

Query: 64 RKVPNTSDPLHNR 77
          RKVPN SDPLHNR
Sbjct: 70 RKVPNASDPLHNR 73

BLAST of Sed0027933 vs. NCBI nr
Match: OMO78847.1 (hypothetical protein CCACVL1_14077 [Corchorus capsularis])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 5  LVLLMVVFTLLVSG---KNQVTMGFVGIDPHPPSRMLNHQMQLLPPPSSSWRDSFHALFA 64
          +++L++VF LLVSG   KN+ +M F  ++ H      N  +   P P    R SF   F+
Sbjct: 8  VIVLLLVFLLLVSGDDQKNEESM-FAAMNVHSQGGKKNQTVNQKPQPQQRLRHSFDFFFS 67

Query: 65 SKRKVPNTSDPLHNR 77
          SKR+VPN SDPLHNR
Sbjct: 68 SKRRVPNASDPLHNR 81

BLAST of Sed0027933 vs. NCBI nr
Match: OAY22995.1 (hypothetical protein MANES_18G043100v8 [Manihot esculenta])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 1  MKARLVLLMVVFTLLVSGKNQVTMGFVGIDPHPPSRMLNHQMQLLPPPSSSWRDSFHALF 60
          M  +L+++++V  L+VSG+ + T+ F   D   P R    Q Q L       R SF   F
Sbjct: 14 MLQKLIVVILVSLLVVSGQKEETLVFNNTDNQQPIRQEKQQRQRL-------RHSFDVFF 73

Query: 61 ASKRKVPNTSDPLHNR 77
          +SKRKVPN SDPLHNR
Sbjct: 74 SSKRKVPNASDPLHNR 82

BLAST of Sed0027933 vs. NCBI nr
Match: OMO70596.1 (hypothetical protein COLO4_28570 [Corchorus olitorius])

HSP 1 Score: 53.9 bits (128), Expect = 7.0e-04
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 0

Query: 2  KARLVLLMVVFTLLVSGKNQVTMGFVGIDPHPPSRMLNHQM-QLLPPPSSSWRDSFHALF 61
          K  +++L+++F LLVSG       F  ++ H      N  + Q    P    R SF A F
Sbjct: 14 KLMVIVLLLLFLLLVSGDQNEESMFAAMNVHSQGDKENQTVNQKQQQPQQRLRHSFDAFF 73

Query: 62 ASKRKVPNTSDPLHNR 77
          +SKR+VPN SDPLHNR
Sbjct: 74 SSKRRVPNASDPLHNR 89

BLAST of Sed0027933 vs. ExPASy TrEMBL
Match: A0A0A0KZW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-10
Identity = 49/84 (58.33%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 1  MKARLVLLMVVFTLLVSGKNQVTMGFVG---IDPHPPSRML---NHQMQLL--PPPSSSW 60
          M+ARL+LLM V TLLVSG N+ TMG      ID HP S M       +QLL  PPP S  
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRS-- 60

Query: 61 RDSFHALFASKRKVPNTSDPLHNR 77
             F+ALFASKRKVPNT DP+HNR
Sbjct: 61 -HLFNALFASKRKVPNTWDPIHNR 81

BLAST of Sed0027933 vs. ExPASy TrEMBL
Match: A0A067L375 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16070 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.7e-06
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 4  RLVLLMVVFTLLVSGKNQVTMGFVGIDPHPPSRMLNHQMQLLPPPSSSWRDSFHALFASK 63
          ++++L+++++LLVSG+ + TM     D   P R   HQ           R SF  LF+SK
Sbjct: 10 KIIVLILLYSLLVSGEKEETMAVTHADDKQPRRQEKHQ---------RLRSSFDVLFSSK 69

Query: 64 RKVPNTSDPLHNR 77
          RKVPN SDPLHNR
Sbjct: 70 RKVPNASDPLHNR 73

BLAST of Sed0027933 vs. ExPASy TrEMBL
Match: A0A1R3I8C4 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14077 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.2e-05
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 5  LVLLMVVFTLLVSG---KNQVTMGFVGIDPHPPSRMLNHQMQLLPPPSSSWRDSFHALFA 64
          +++L++VF LLVSG   KN+ +M F  ++ H      N  +   P P    R SF   F+
Sbjct: 8  VIVLLLVFLLLVSGDDQKNEESM-FAAMNVHSQGGKKNQTVNQKPQPQQRLRHSFDFFFS 67

Query: 65 SKRKVPNTSDPLHNR 77
          SKR+VPN SDPLHNR
Sbjct: 68 SKRRVPNASDPLHNR 81

BLAST of Sed0027933 vs. ExPASy TrEMBL
Match: A0A2C9U059 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G043100 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.2e-05
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 1  MKARLVLLMVVFTLLVSGKNQVTMGFVGIDPHPPSRMLNHQMQLLPPPSSSWRDSFHALF 60
          M  +L+++++V  L+VSG+ + T+ F   D   P R    Q Q L       R SF   F
Sbjct: 14 MLQKLIVVILVSLLVVSGQKEETLVFNNTDNQQPIRQEKQQRQRL-------RHSFDVFF 73

Query: 61 ASKRKVPNTSDPLHNR 77
          +SKRKVPN SDPLHNR
Sbjct: 74 SSKRKVPNASDPLHNR 82

BLAST of Sed0027933 vs. ExPASy TrEMBL
Match: A0A1R3HJP1 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28570 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.4e-04
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 0

Query: 2  KARLVLLMVVFTLLVSGKNQVTMGFVGIDPHPPSRMLNHQM-QLLPPPSSSWRDSFHALF 61
          K  +++L+++F LLVSG       F  ++ H      N  + Q    P    R SF A F
Sbjct: 14 KLMVIVLLLLFLLLVSGDQNEESMFAAMNVHSQGDKENQTVNQKQQQPQQRLRHSFDAFF 73

Query: 62 ASKRKVPNTSDPLHNR 77
          +SKR+VPN SDPLHNR
Sbjct: 74 SSKRRVPNASDPLHNR 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649873.11.5e-0656.94hypothetical protein Csa_012848, partial [Cucumis sativus][more]
KDP41663.19.7e-0643.84hypothetical protein JCGZ_16070 [Jatropha curcas][more]
OMO78847.11.1e-0444.00hypothetical protein CCACVL1_14077 [Corchorus capsularis][more]
OAY22995.11.1e-0443.42hypothetical protein MANES_18G043100v8 [Manihot esculenta][more]
OMO70596.17.0e-0440.79hypothetical protein COLO4_28570 [Corchorus olitorius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZW13.1e-1058.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1[more]
A0A067L3754.7e-0643.84Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16070 PE=4 SV=1[more]
A0A1R3I8C45.2e-0544.00Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14077 PE=4 ... [more]
A0A2C9U0595.2e-0543.42Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G043100 PE=4 SV=... [more]
A0A1R3HJP13.4e-0440.79Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28570 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039316CLAVATA3/ESR (CLE)-related protein 25/26PANTHERPTHR34277CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 4..76
NoneNo IPR availablePANTHERPTHR34277:SF1CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE20coord: 4..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027933.1Sed0027933.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment