Sed0027920 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATTGCTCCCGGCTCATCCTATAAATACACGGCTTGAGTAAATTTAGGTTTGCCAAATTGAAGAGCTGAACGCGGCTTATAAGAAAATCCTCTCTTCTTCTTCGTCTTCATCTTCTCGACTTTTGTCCTCACTGTAACATCAATGGCGGTTTCTTCTAGAAGATCGAGCGGACCAGTTCTGAGGTCTCTCTCACCTTCTGCAAGATTCTACGGTTCCTATTCTTCTTCTTCATCGCCTTCTTCCTCATCAGCTTTTGCGTCTTCAACCTCAAGCTTTTCCACCAAAAACCCCACGTTTTTCCCTAGATCTGTATCTCCATCACGCGTTAATCTCCAAGGTTCTTCTTCTCCGTCGGCGTCGTCGATGAGATTCTCTCTCGACCGGTCCATTTCTCCGAATCGGTCCATCTCTGTTTTGACTCGTAGCAGTGGAAATCCAGTGAAGAACCAGAGCAATCAGAAGCGAACCTGCATGTGCTCGCCAACTACGCATCCCGGTTCGTTCCGGTGTAGTCTCCACAAAAACGCTCCGTCGCAACATTCGTCTCCTTACTCGTCGAATCGCCTCAACGCGCGGAGATCAGCGATGACGAACTCTCTGGTTAGAATCGGCGGAGTCGAAGGCGATCTTGTGAAGCGAGCCTTGGCCGCTCTCATCCGGCCTTCATCTCATAGCCAAAGACGCCGCGCGGATTTCTGTCCGAGACCGAGCAGGCTTTCGATCATGTCGAAAGCAGATCTGTGATGGAGATTTTGGTACGTTTTGGCCAATATTCTCTGGTTTATTAATGTTTTTTGCATCTTCTTCGAGTTTCCGACGACGAAGACGGCGGATTCCGGCGGCAGTGAAGGATCTCAGCGGCGGAAGATCTGGTTGCTGCTCGGAGTTTTGGATTAGAGAACCTTTAAAACCTTTGTATGTACAGAATATCTAAATATATGGAAGATCTATACAGTTGCTGCGATATTGATAACAATTCGTGGAACTTAATTTTTTTTCACAAAGAGTTTCAAAATTATCCTCAAATCAAGCCCTAATTGGTCTGAATTTCTAACTAATTTCGACTGAAATTGTTCAAAATTATTTTTCTTCTAATCGCTGAAATCATTCCGTTGTTAATATGTTCTACTCGCTTCGTATTGTTTACAGAACGTCTGTGTATGTTGTTTGGTTTGGTAGACGCCGTCAACTCCGTTGAATCGTTGGCCTGAAATTACGTACTTATGGTCGCCGTTATCCGTTCCGTTAAGCAAGGTGAAGTAATTTAATATTTTGTACTTCCTATTTCCATTGTTTTCTTTGTTCTGTATAATTTCTGTTCGTGTTCTGCGTACAGATGCTTGCAGGTTGAAGCGGAAGAACATATGACCTATGAATTTTGTTAAGATATGGTTTATGGATTTCTGATATAATGATGATGGAGATTTGACACAAATTGAATTCAAATGAATTGGGAATAAATTTCTTGAGTACATAAAAAATAAAAGTGAAAGAAGAGGTAGAGAGAATAAGATGTGTGGACCCAAAAGGAAATGAAGAAATAGGAGATTGACGAGGATGGGGGGGGTTAGACATGGGAGGTGGATGATGGTGGTTGGCCTGTCAAGGCCCAAATCGGTGGAAGGAACCGACTTCTATTTTGGCTATGAACAAATTACTCCATTTGAGTATCTGGTGGAACCGGGATAAATACAGATTCTCGAGATTGAATCTTCTTCGAGAGGGGAAACCAATACAGATCTTTGGGATTGAACCTTGAACTTGCCAACAAGAACTTGTTTACAAACCAAGCAATGAATCGCATCACTATTCATTCGTTATAATCTTGTTTGGTTGTTCGTAAAGAAAATGGATATTGAGAAATTGATTGGGGTATAATTAAAAACATTTGAACAGAAGGGCTAATTTTAAAACTTCGTTCAATTATCTCTCTAAAAAAAGACTTCGTTCAAAATTGGGCAATACTTCATGGCCACAAATTTCATACTTTGGTATTTACCGGATTTAAATAAACCTCTAAATAAATTAAACTCAAATTTATTGGCGTTGATTTTGAATAAATGAAATATTTAATATTTACATAAATTTGAGTTCATTCAATTGAATTTATAATTAATTTTAATTAATTTATGTTATTATATGTGGG AATTGCTCCCGGCTCATCCTATAAATACACGGCTTGAGTAAATTTAGGTTTGCCAAATTGAAGAGCTGAACGCGGCTTATAAGAAAATCCTCTCTTCTTCTTCGTCTTCATCTTCTCGACTTTTGTCCTCACTGTAACATCAATGGCGGTTTCTTCTAGAAGATCGAGCGGACCAGTTCTGAGGTCTCTCTCACCTTCTGCAAGATTCTACGGTTCCTATTCTTCTTCTTCATCGCCTTCTTCCTCATCAGCTTTTGCGTCTTCAACCTCAAGCTTTTCCACCAAAAACCCCACGTTTTTCCCTAGATCTGTATCTCCATCACGCGTTAATCTCCAAGGTTCTTCTTCTCCGTCGGCGTCGTCGATGAGATTCTCTCTCGACCGGTCCATTTCTCCGAATCGGTCCATCTCTGTTTTGACTCGTAGCAGTGGAAATCCAGTGAAGAACCAGAGCAATCAGAAGCGAACCTGCATGTGCTCGCCAACTACGCATCCCGGTTCGTTCCGGTGTAGTCTCCACAAAAACGCTCCGTCGCAACATTCGTCTCCTTACTCGTCGAATCGCCTCAACGCGCGGAGATCAGCGATGACGAACTCTCTGGTTAGAATCGGCGGAGTCGAAGGCGATCTTGTGAAGCGAGCCTTGGCCGCTCTCATCCGGCCTTCATCTCATAGCCAAAGACGCCGCGCGGATTTCTGTCCGAGACCGAGCAGGCTTTCGATCATGTCGAAAGCAGATCTGTGATGGAGATTTTGGTACGTTTTGGCCAATATTCTCTGGTTTATTAATGTTTTTTGCATCTTCTTCGAGTTTCCGACGACGAAGACGGCGGATTCCGGCGGCAGTGAAGGATCTCAGCGGCGGAAGATCTGGTTGCTGCTCGGAGTTTTGGATTAGAGAACCTTTAAAACCTTTAACGTCTGTGTATGTTGTTTGGTTTGGTAGACGCCGTCAACTCCGTTGAATCGTTGGCCTGAAATTACGTACTTATGGTCGCCGTTATCCGTTCCGTTAAGCAAGGTGAAGTAATTTAATATTTTGTACTTCCTATTTCCATTGTTTTCTTTGTTCTGTATAATTTCTGTTCGTGTTCTGCGTACAGATGCTTGCAGGTTGAAGCGGAAGAACATATGACCTATGAATTTTGTTAAGATATGGTTTATGGATTTCTGATATAATGATGATGGAGATTTGACACAAATTGAATTCAAATGAATTGGGAATAAATTTCTTGAGTACATAAAAAATAAAAGTGAAAGAAGAGGTAGAGAGAATAAGATGTGTGGACCCAAAAGGAAATGAAGAAATAGGAGATTGACGAGGATGGGGGGGGTTAGACATGGGAGGTGGATGATGGTGGTTGGCCTGTCAAGGCCCAAATCGGTGGAAGGAACCGACTTCTATTTTGGCTATGAACAAATTACTCCATTTGAGTATCTGGTGGAACCGGGATAAATACAGATTCTCGAGATTGAATCTTCTTCGAGAGGGGAAACCAATACAGATCTTTGGGATTGAACCTTGAACTTGCCAACAAGAACTTGTTTACAAACCAAGCAATGAATCGCATCACTATTCATTCGTTATAATCTTGTTTGGTTGTTCGTAAAGAAAATGGATATTGAGAAATTGATTGGGGTATAATTAAAAACATTTGAACAGAAGGGCTAATTTTAAAACTTCGTTCAATTATCTCTCTAAAAAAAGACTTCGTTCAAAATTGGGCAATACTTCATGGCCACAAATTTCATACTTTGGTATTTACCGGATTTAAATAAACCTCTAAATAAATTAAACTCAAATTTATTGGCGTTGATTTTGAATAAATGAAATATTTAATATTTACATAAATTTGAGTTCATTCAATTGAATTTATAATTAATTTTAATTAATTTATGTTATTATATGTGGG ATGGCGGTTTCTTCTAGAAGATCGAGCGGACCAGTTCTGAGGTCTCTCTCACCTTCTGCAAGATTCTACGGTTCCTATTCTTCTTCTTCATCGCCTTCTTCCTCATCAGCTTTTGCGTCTTCAACCTCAAGCTTTTCCACCAAAAACCCCACGTTTTTCCCTAGATCTGTATCTCCATCACGCGTTAATCTCCAAGGTTCTTCTTCTCCGTCGGCGTCGTCGATGAGATTCTCTCTCGACCGGTCCATTTCTCCGAATCGGTCCATCTCTGTTTTGACTCGTAGCAGTGGAAATCCAGTGAAGAACCAGAGCAATCAGAAGCGAACCTGCATGTGCTCGCCAACTACGCATCCCGGTTCGTTCCGGTGTAGTCTCCACAAAAACGCTCCGTCGCAACATTCGTCTCCTTACTCGTCGAATCGCCTCAACGCGCGGAGATCAGCGATGACGAACTCTCTGGTTAGAATCGGCGGAGTCGAAGGCGATCTTGTGAAGCGAGCCTTGGCCGCTCTCATCCGGCCTTCATCTCATAGCCAAAGACGCCGCGCGGATTTCTGTCCGAGACCGAGCAGGCTTTCGATCATGTCGAAAGCAGATCTGTGA MAVSSRRSSGPVLRSLSPSARFYGSYSSSSSPSSSSAFASSTSSFSTKNPTFFPRSVSPSRVNLQGSSSPSASSMRFSLDRSISPNRSISVLTRSSGNPVKNQSNQKRTCMCSPTTHPGSFRCSLHKNAPSQHSSPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHSQRRRADFCPRPSRLSIMSKADL Homology
BLAST of Sed0027920 vs. NCBI nr
Match: XP_038879100.1 (uncharacterized serine-rich protein C215.13-like [Benincasa hispida]) HSP 1 Score: 312.0 bits (798), Expect = 3.7e-81 Identity = 179/202 (88.61%), Postives = 188/202 (93.07%), Query Frame = 0
BLAST of Sed0027920 vs. NCBI nr
Match: XP_022933728.1 (uncharacterized protein LOC111441057 [Cucurbita moschata] >KAG6587861.1 hypothetical protein SDJN03_16426, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 309.7 bits (792), Expect = 1.9e-80 Identity = 178/200 (89.00%), Postives = 184/200 (92.00%), Query Frame = 0
BLAST of Sed0027920 vs. NCBI nr
Match: KAG7021750.1 (hypothetical protein SDJN02_15477, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 309.7 bits (792), Expect = 1.9e-80 Identity = 178/200 (89.00%), Postives = 184/200 (92.00%), Query Frame = 0
BLAST of Sed0027920 vs. NCBI nr
Match: XP_023530348.1 (uncharacterized protein LOC111792947 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 307.8 bits (787), Expect = 7.0e-80 Identity = 177/200 (88.50%), Postives = 184/200 (92.00%), Query Frame = 0
BLAST of Sed0027920 vs. NCBI nr
Match: XP_022966156.1 (uncharacterized protein LOC111465917 [Cucurbita maxima]) HSP 1 Score: 306.2 bits (783), Expect = 2.0e-79 Identity = 177/200 (88.50%), Postives = 183/200 (91.50%), Query Frame = 0
BLAST of Sed0027920 vs. ExPASy TrEMBL
Match: A0A6J1F5M8 (uncharacterized protein LOC111441057 OS=Cucurbita moschata OX=3662 GN=LOC111441057 PE=4 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 9.0e-81 Identity = 178/200 (89.00%), Postives = 184/200 (92.00%), Query Frame = 0
BLAST of Sed0027920 vs. ExPASy TrEMBL
Match: A0A6J1HNK6 (uncharacterized protein LOC111465917 OS=Cucurbita maxima OX=3661 GN=LOC111465917 PE=4 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 9.9e-80 Identity = 177/200 (88.50%), Postives = 183/200 (91.50%), Query Frame = 0
BLAST of Sed0027920 vs. ExPASy TrEMBL
Match: A0A0A0LW36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264020 PE=4 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 5.4e-78 Identity = 175/202 (86.63%), Postives = 185/202 (91.58%), Query Frame = 0
BLAST of Sed0027920 vs. ExPASy TrEMBL
Match: A0A6J1JI11 (uncharacterized serine-rich protein C215.13-like OS=Cucurbita maxima OX=3661 GN=LOC111485282 PE=4 SV=1) HSP 1 Score: 297.0 bits (759), Expect = 6.0e-77 Identity = 173/205 (84.39%), Postives = 185/205 (90.24%), Query Frame = 0
BLAST of Sed0027920 vs. ExPASy TrEMBL
Match: A0A6J1C124 (uncharacterized protein DDB_G0271670-like OS=Momordica charantia OX=3673 GN=LOC111007469 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 3.0e-76 Identity = 174/204 (85.29%), Postives = 184/204 (90.20%), Query Frame = 0
BLAST of Sed0027920 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related ) HSP 1 Score: 183.7 bits (465), Expect = 1.4e-46 Identity = 126/214 (58.88%), Postives = 148/214 (69.16%), Query Frame = 0
BLAST of Sed0027920 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related ) HSP 1 Score: 169.5 bits (428), Expect = 2.8e-42 Identity = 119/220 (54.09%), Postives = 151/220 (68.64%), Query Frame = 0
BLAST of Sed0027920 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related ) HSP 1 Score: 169.5 bits (428), Expect = 2.8e-42 Identity = 119/220 (54.09%), Postives = 151/220 (68.64%), Query Frame = 0
BLAST of Sed0027920 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related ) HSP 1 Score: 65.9 bits (159), Expect = 4.3e-11 Identity = 63/173 (36.42%), Postives = 84/173 (48.55%), Query Frame = 0
BLAST of Sed0027920 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 5.1e-04 Identity = 21/55 (38.18%), Postives = 29/55 (52.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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