Sed0027898 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATATATCTCAATATTATTAAATCTCTAGATCCAAAGGGCTCCATAATGGCAGAGAATTTTGTTATTACAACTACTGTATTTAATGCAAGAGACCTCGAAATAGCTTGGAGTGAAGATCCAACGCGTTGGAAATGGGTAAAGGTGGATGTACCAAGGTATAATCTTTACCCATTTGTCCATTAAAATATATCGATGAAACGTACTAAGAAGAATAATATATAATATTGTATTAATGAGTATTTATAATAGTATTGAAACATATTAATAATTATGTATGCAAATATTTTAAAATTCAACTACATTTGTAATTATTTTGTGAGAATAACTAATCCATTATAATTTCCCTTTTTATATTTGTTAGTATTGAGTCGATATACGTATATCTCAACTATTAACAATTCTCTGACCTGACAATTGAATCAATAACTTCTTAGTTAATATCTAAGACTTTTTTTATTACTAGGCCACCCATTCAACCTCAGGAAGCGGCCGAGCTTTTGGGGGTGAATTGGCTCGAGGTTCGTAAGATAGTCACAGTAGAGAAGCTGGTGTTTAGTAATGCAGAAGATTATTATGCGGCATTTGAGGTAATGATGAAGGAAGATGCCAGTGGATGGGAGGCTCCTGTGACTCTTACATGGAAGAAGTTAGACAGTGAACAAACACCACACATTATATACCAAGACATGCACATGCTACCAACAAATAAATGGGTTCCTCTCATTGTAGGAGGTTTCAAGCACGCTGACATTGAACAAACTGGTATTGAGTTCAGCATGTCTCAACATGATAACTTTGTGAAGAAGGGCTTAGTTGTGAGATCTCTTGTCATTACTCCAATATTAAAGTAATACCATCAATCATATAACTATACTACGTATAAAATAATCAACATCTTTTGCTTGCGTGTGTGCGTGTATGTGTGTGCGCGTGCGTGTTTGCGTGTATGAGAACGCACTAGTATTAATTACCAAATGAAAACATATATAGTATGACATGTTGCATACACCTAGTATCAAGGTTAAGTTACTATCATATAATTGTCACTTTATCATGTTTTTATTAGAAAGTGTGAACATCCATGTGTCGAC AATATATCTCAATATTATTAAATCTCTAGATCCAAAGGGCTCCATAATGGCAGAGAATTTTGTTATTACAACTACTGTATTTAATGCAAGAGACCTCGAAATAGCTTGGAGTGAAGATCCAACGCGTTGGAAATGGGTAAAGGTGGATGTACCAAGGCCACCCATTCAACCTCAGGAAGCGGCCGAGCTTTTGGGGGTGAATTGGCTCGAGGTTCGTAAGATAGTCACAGTAGAGAAGCTGGTGTTTAGTAATGCAGAAGATTATTATGCGGCATTTGAGGTAATGATGAAGGAAGATGCCAGTGGATGGGAGGCTCCTGTGACTCTTACATGGAAGAAGTTAGACAGTGAACAAACACCACACATTATATACCAAGACATGCACATGCTACCAACAAATAAATGGGTTCCTCTCATTGTAGGAGGTTTCAAGCACGCTGACATTGAACAAACTGGTATTGAGTTCAGCATGTCTCAACATGATAACTTTGTGAAGAAGGGCTTAGTTGTGAGATCTCTTGTCATTACTCCAATATTAAAGTAATACCATCAATCATATAACTATACTACGTATAAAATAATCAACATCTTTTGCTTGCGTGTGTGCGTGTATGTGTGTGCGCGTGCGTGTTTGCGTGTATGAGAACGCACTAGTATTAATTACCAAATGAAAACATATATAGTATGACATGTTGCATACACCTAGTATCAAGGTTAAGTTACTATCATATAATTGTCACTTTATCATGTTTTTATTAGAAAGTGTGAACATCCATGTGTCGAC ATGGCAGAGAATTTTGTTATTACAACTACTGTATTTAATGCAAGAGACCTCGAAATAGCTTGGAGTGAAGATCCAACGCGTTGGAAATGGGTAAAGGTGGATGTACCAAGGCCACCCATTCAACCTCAGGAAGCGGCCGAGCTTTTGGGGGTGAATTGGCTCGAGGTTCGTAAGATAGTCACAGTAGAGAAGCTGGTGTTTAGTAATGCAGAAGATTATTATGCGGCATTTGAGGTAATGATGAAGGAAGATGCCAGTGGATGGGAGGCTCCTGTGACTCTTACATGGAAGAAGTTAGACAGTGAACAAACACCACACATTATATACCAAGACATGCACATGCTACCAACAAATAAATGGGTTCCTCTCATTGTAGGAGGTTTCAAGCACGCTGACATTGAACAAACTGGTATTGAGTTCAGCATGTCTCAACATGATAACTTTGTGAAGAAGGGCTTAGTTGTGAGATCTCTTGTCATTACTCCAATATTAAAGTAA MAENFVITTTVFNARDLEIAWSEDPTRWKWVKVDVPRPPIQPQEAAELLGVNWLEVRKIVTVEKLVFSNAEDYYAAFEVMMKEDASGWEAPVTLTWKKLDSEQTPHIIYQDMHMLPTNKWVPLIVGGFKHADIEQTGIEFSMSQHDNFVKKGLVVRSLVITPILK Homology
BLAST of Sed0027898 vs. NCBI nr
Match: XP_038876500.1 (lectin-like [Benincasa hispida]) HSP 1 Score: 90.5 bits (223), Expect = 1.5e-14 Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 0
BLAST of Sed0027898 vs. NCBI nr
Match: C0HJV2.1 (RecName: Full=Lectin; AltName: Full=Agglutinin; Short=LAA [Luffa acutangula]) HSP 1 Score: 90.5 bits (223), Expect = 1.5e-14 Identity = 64/155 (41.29%), Postives = 79/155 (50.97%), Query Frame = 0
BLAST of Sed0027898 vs. NCBI nr
Match: BAK79141.1 (phloem lectin-like protein [Benincasa hispida]) HSP 1 Score: 90.1 bits (222), Expect = 1.9e-14 Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 0
BLAST of Sed0027898 vs. NCBI nr
Match: XP_011626594.1 (uncharacterized protein LOC105421323 [Amborella trichopoda]) HSP 1 Score: 88.2 bits (217), Expect = 7.2e-14 Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 0
BLAST of Sed0027898 vs. NCBI nr
Match: XP_038877540.1 (lectin-like [Benincasa hispida]) HSP 1 Score: 87.4 bits (215), Expect = 1.2e-13 Identity = 50/148 (33.78%), Postives = 77/148 (52.03%), Query Frame = 0
BLAST of Sed0027898 vs. ExPASy Swiss-Prot
Match: C0HJV2 (Lectin OS=Luffa acutangula OX=56866 PE=1 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 1.9e-17 Identity = 64/155 (41.29%), Postives = 79/155 (50.97%), Query Frame = 0
BLAST of Sed0027898 vs. ExPASy Swiss-Prot
Match: Q9FHE8 (Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana OX=3702 GN=PP2A6 PE=2 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 5.4e-12 Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = 0
BLAST of Sed0027898 vs. ExPASy Swiss-Prot
Match: Q9C8U9 (Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 OS=Arabidopsis thaliana OX=3702 GN=PP2A4 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 5.6e-09 Identity = 42/150 (28.00%), Postives = 65/150 (43.33%), Query Frame = 0
BLAST of Sed0027898 vs. ExPASy Swiss-Prot
Match: Q9C5Q9 (Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana OX=3702 GN=PP2A5 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08 Identity = 43/153 (28.10%), Postives = 64/153 (41.83%), Query Frame = 0
BLAST of Sed0027898 vs. ExPASy TrEMBL
Match: G1UJV7 (Phloem lectin-like protein OS=Benincasa hispida OX=102211 GN=bplp PE=2 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 9.2e-15 Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 0
BLAST of Sed0027898 vs. ExPASy TrEMBL
Match: A0A6J1CN87 (lectin-like OS=Momordica charantia OX=3673 GN=LOC111012568 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 6.0e-14 Identity = 54/148 (36.49%), Postives = 79/148 (53.38%), Query Frame = 0
BLAST of Sed0027898 vs. ExPASy TrEMBL
Match: A0A5H2XQI9 (Phloem protein 2-A1 OS=Prunus dulcis OX=3755 GN=Prudu_1438S001200 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12 Identity = 54/152 (35.53%), Postives = 75/152 (49.34%), Query Frame = 0
BLAST of Sed0027898 vs. ExPASy TrEMBL
Match: A0A1S3CQJ8 (protein PHLOEM PROTEIN 2-LIKE A1-like OS=Cucumis melo OX=3656 GN=LOC103503156 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12 Identity = 53/149 (35.57%), Postives = 80/149 (53.69%), Query Frame = 0
BLAST of Sed0027898 vs. ExPASy TrEMBL
Match: A0A7J6GE37 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003167 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 2.5e-12 Identity = 57/151 (37.75%), Postives = 71/151 (47.02%), Query Frame = 0
BLAST of Sed0027898 vs. TAIR 10
Match: AT5G45080.1 (phloem protein 2-A6 ) HSP 1 Score: 72.4 bits (176), Expect = 3.8e-13 Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = 0
BLAST of Sed0027898 vs. TAIR 10
Match: AT1G33920.1 (phloem protein 2-A4 ) HSP 1 Score: 62.4 bits (150), Expect = 4.0e-10 Identity = 42/150 (28.00%), Postives = 65/150 (43.33%), Query Frame = 0
BLAST of Sed0027898 vs. TAIR 10
Match: AT1G65390.1 (phloem protein 2 A5 ) HSP 1 Score: 60.5 bits (145), Expect = 1.5e-09 Identity = 43/153 (28.10%), Postives = 64/153 (41.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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