Sed0027852 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTGGTTGTTAAAAACTTAGATTTAAAAACAAAAAATTAAAAATGAAATAGTTATCAATGGACTCTAAGAAATTAGGATTTATTTTGCAGGCTAAAAATATCAATTATAGAACGTGTCAGAAAATTCTAGCACTCACCGCGGCACTGCTTCCAGACCTTTCCAGCCGCTTCAAGTCGTCTCTCCTTCAACCCTCCATTTAAAACCCTAAATCCCCAAATCTCGAATTCCAAATCCCAATTCCACCATTGATCTCTGCAACAACCAACAACAAATAAAATCATGAACCCGATCGGCGACAAGAAAGAGAAAGTCACAATCCGAGCGGTTAGCCGCGACGAAGAAGGCAAAAAACGAGTCGAAAAAACCCAAATCCACTCTCACAACATCGATACCGTCAAATACGTCGAGAAGAAGCTCGTCGACAAGGGAGTCCAGCGGCTCGACCGCCACCCGGTCCATGGCCGGGCCGGCATCGGCCACCCGCCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACTTGGTTGGGCCCGGGCGATGCGATCGAGAACGACCTCTCGCCGGCGCCGGCGGCTATGGATCACAAGGATCCGAACTATGTGGATGAGGATCTGGCCGGAGAAGTTGAGGTTCCGCCGGAGACGGCGGCGCCGGCGAGAGTTGAGGTGGATCCTCTGCTTCAATTGCAATGAAATTGAGGCTTGGGAGGTGTTCGTTTTCAGTGGTTTTCTTTGTTGTGAAAATGGTATTATAAATAATAAGTTTGTATTTTCAAAATGATCCCTGCACTCTTAACTTTTATTTATTAGTCCTTGATATTTAAGGAATGTATATTTTTATTCTAATCACTGGTTATTATAAGTTTCTTGTGAAACTCGAAGGTGAATGAAATTCAAACTTTAGTTTAC GCTGGTTGTTAAAAACTTAGATTTAAAAACAAAAAATTAAAAATGAAATAGTTATCAATGGACTCTAAGAAATTAGGATTTATTTTGCAGGCTAAAAATATCAATTATAGAACGTGTCAGAAAATTCTAGCACTCACCGCGGCACTGCTTCCAGACCTTTCCAGCCGCTTCAAGTCGTCTCTCCTTCAACCCTCCATTTAAAACCCTAAATCCCCAAATCTCGAATTCCAAATCCCAATTCCACCATTGATCTCTGCAACAACCAACAACAAATAAAATCATGAACCCGATCGGCGACAAGAAAGAGAAAGTCACAATCCGAGCGGTTAGCCGCGACGAAGAAGGCAAAAAACGAGTCGAAAAAACCCAAATCCACTCTCACAACATCGATACCGTCAAATACGTCGAGAAGAAGCTCGTCGACAAGGGAGTCCAGCGGCTCGACCGCCACCCGGTCCATGGCCGGGCCGGCATCGGCCACCCGCCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACTTGGTTGGGCCCGGGCGATGCGATCGAGAACGACCTCTCGCCGGCGCCGGCGGCTATGGATCACAAGGATCCGAACTATGTGGATGAGGATCTGGCCGGAGAAGTTGAGGTTCCGCCGGAGACGGCGGCGCCGGCGAGAGTTGAGGTGGATCCTCTGCTTCAATTGCAATGAAATTGAGGCTTGGGAGGTGTTCGTTTTCAGTGGTTTTCTTTGTTGTGAAAATGGTATTATAAATAATAAGTTTGTATTTTCAAAATGATCCCTGCACTCTTAACTTTTATTTATTAGTCCTTGATATTTAAGGAATGTATATTTTTATTCTAATCACTGGTTATTATAAGTTTCTTGTGAAACTCGAAGGTGAATGAAATTCAAACTTTAGTTTAC ATGAACCCGATCGGCGACAAGAAAGAGAAAGTCACAATCCGAGCGGTTAGCCGCGACGAAGAAGGCAAAAAACGAGTCGAAAAAACCCAAATCCACTCTCACAACATCGATACCGTCAAATACGTCGAGAAGAAGCTCGTCGACAAGGGAGTCCAGCGGCTCGACCGCCACCCGGTCCATGGCCGGGCCGGCATCGGCCACCCGCCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACTTGGTTGGGCCCGGGCGATGCGATCGAGAACGACCTCTCGCCGGCGCCGGCGGCTATGGATCACAAGGATCCGAACTATGTGGATGAGGATCTGGCCGGAGAAGTTGAGGTTCCGCCGGAGACGGCGGCGCCGGCGAGAGTTGAGGTGGATCCTCTGCTTCAATTGCAATGA MNPIGDKKEKVTIRAVSRDEEGKKRVEKTQIHSHNIDTVKYVEKKLVDKGVQRLDRHPVHGRAGIGHPPPKSGRGGKFTWLGPGDAIENDLSPAPAAMDHKDPNYVDEDLAGEVEVPPETAAPARVEVDPLLQLQ Homology
BLAST of Sed0027852 vs. NCBI nr
Match: XP_004137866.1 (uncharacterized protein LOC101207081 [Cucumis sativus] >KGN59049.1 hypothetical protein Csa_002138 [Cucumis sativus]) HSP 1 Score: 207.6 bits (527), Expect = 6.7e-50 Identity = 107/146 (73.29%), Postives = 119/146 (81.51%), Query Frame = 0
BLAST of Sed0027852 vs. NCBI nr
Match: XP_008442790.1 (PREDICTED: uncharacterized protein LOC103486565 [Cucumis melo] >KAA0043928.1 uncharacterized protein E6C27_scaffold236G002680 [Cucumis melo var. makuwa] >TYK25211.1 uncharacterized protein E5676_scaffold352G003410 [Cucumis melo var. makuwa]) HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47 Identity = 104/148 (70.27%), Postives = 117/148 (79.05%), Query Frame = 0
BLAST of Sed0027852 vs. NCBI nr
Match: XP_038904411.1 (uncharacterized protein LOC120090774 [Benincasa hispida]) HSP 1 Score: 199.5 bits (506), Expect = 1.8e-47 Identity = 104/145 (71.72%), Postives = 118/145 (81.38%), Query Frame = 0
BLAST of Sed0027852 vs. NCBI nr
Match: XP_022144711.1 (uncharacterized protein LOC111014332 [Momordica charantia]) HSP 1 Score: 197.6 bits (501), Expect = 6.9e-47 Identity = 103/140 (73.57%), Postives = 116/140 (82.86%), Query Frame = 0
BLAST of Sed0027852 vs. NCBI nr
Match: XP_022935160.1 (uncharacterized protein LOC111442115 [Cucurbita moschata] >KAG6580661.1 hypothetical protein SDJN03_20663, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 196.4 bits (498), Expect = 1.5e-46 Identity = 105/146 (71.92%), Postives = 112/146 (76.71%), Query Frame = 0
BLAST of Sed0027852 vs. ExPASy TrEMBL
Match: A0A0A0LDV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G748780 PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 3.2e-50 Identity = 107/146 (73.29%), Postives = 119/146 (81.51%), Query Frame = 0
BLAST of Sed0027852 vs. ExPASy TrEMBL
Match: A0A5A7TM42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003410 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 6.8e-48 Identity = 104/148 (70.27%), Postives = 117/148 (79.05%), Query Frame = 0
BLAST of Sed0027852 vs. ExPASy TrEMBL
Match: A0A1S3B6J5 (uncharacterized protein LOC103486565 OS=Cucumis melo OX=3656 GN=LOC103486565 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 6.8e-48 Identity = 104/148 (70.27%), Postives = 117/148 (79.05%), Query Frame = 0
BLAST of Sed0027852 vs. ExPASy TrEMBL
Match: A0A6J1CU79 (uncharacterized protein LOC111014332 OS=Momordica charantia OX=3673 GN=LOC111014332 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 3.4e-47 Identity = 103/140 (73.57%), Postives = 116/140 (82.86%), Query Frame = 0
BLAST of Sed0027852 vs. ExPASy TrEMBL
Match: A0A6J1F9T7 (uncharacterized protein LOC111442115 OS=Cucurbita moschata OX=3662 GN=LOC111442115 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 7.5e-47 Identity = 105/146 (71.92%), Postives = 112/146 (76.71%), Query Frame = 0
BLAST of Sed0027852 vs. TAIR 10
Match: AT3G10020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 110.9 bits (276), Expect = 7.9e-25 Identity = 64/142 (45.07%), Postives = 87/142 (61.27%), Query Frame = 0
BLAST of Sed0027852 vs. TAIR 10
Match: AT3G10020.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 100.9 bits (250), Expect = 8.2e-22 Identity = 49/107 (45.79%), Postives = 72/107 (67.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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