Sed0027734 (gene) Chayote v1

Overview


Name	Sed0027734
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCT-alpha
Location	LG10: 4310026 .. 4310272 (+)
RNA-Seq Expression	Sed0027734
Synteny	Sed0027734

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACTAGATCTATCCAATGGATCCATTCGCAATAACTTGGAAGCTGGTGTCATTGAGCCGGCCATGAGCAAAATTAAGATAATTCAGGTAAATAACACTTAAATTTTCCTTAATTTTTATTCGTTAGCAACACTCTTCATATTCTTTTTCTTCCCAGTTTGCGACTGAAGCAGCAATTACGATTCTTCGTATTGACGACATGATCAAGCTCTACAAGGATGAAACTCAAAATGGGGAGGAATAG

mRNA sequence

ATGGGACTAGATCTATCCAATGGATCCATTCGCAATAACTTGGAAGCTGGTGTCATTGAGCCGGCCATGAGCAAAATTAAGATAATTCAGTTTGCGACTGAAGCAGCAATTACGATTCTTCGTATTGACGACATGATCAAGCTCTACAAGGATGAAACTCAAAATGGGGAGGAATAG

Coding sequence (CDS)

ATGGGACTAGATCTATCCAATGGATCCATTCGCAATAACTTGGAAGCTGGTGTCATTGAGCCGGCCATGAGCAAAATTAAGATAATTCAGTTTGCGACTGAAGCAGCAATTACGATTCTTCGTATTGACGACATGATCAAGCTCTACAAGGATGAAACTCAAAATGGGGAGGAATAG

Protein sequence

MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGEE

Homology

[Close]

BLAST of Sed0027734 vs. NCBI nr
Match: XP_022144491.1 (T-complex protein 1 subunit alpha [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-20
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGEE 59
           MGLDLSNG+IRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKLYKDETQN EE
Sbjct: 489 MGLDLSNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLYKDETQNEEE 546

[Close]

BLAST of Sed0027734 vs. NCBI nr
Match: XP_022949009.1 (T-complex protein 1 subunit alpha [Cucurbita moschata] >KAG6607133.1 T-complex protein 1 subunit alpha, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-20
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           MGLDLSNG+IRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKLYKDETQN E
Sbjct: 489 MGLDLSNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLYKDETQNEE 545

[Close]

BLAST of Sed0027734 vs. NCBI nr
Match: XP_008441727.1 (PREDICTED: T-complex protein 1 subunit alpha [Cucumis melo] >TYK22198.1 T-complex protein 1 subunit alpha [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-20
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           MGLDL+NGSIRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKLYKDETQN E
Sbjct: 489 MGLDLTNGSIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLYKDETQNEE 545

[Close]

BLAST of Sed0027734 vs. NCBI nr
Match: XP_023524959.1 (T-complex protein 1 subunit alpha [Cucurbita pepo subsp. pepo] >KAG7036823.1 T-complex protein 1 subunit alpha [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-20
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           MGLDLSNG+IRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKLYKDETQN E
Sbjct: 489 MGLDLSNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLYKDETQNEE 545

[Close]

BLAST of Sed0027734 vs. NCBI nr
Match: XP_011649041.1 (T-complex protein 1 subunit alpha [Cucumis sativus] >XP_031737090.1 T-complex protein 1 subunit alpha [Cucumis sativus] >KGN61361.1 hypothetical protein Csa_006728 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-20
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           MGLDL+NGSIRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKLYKDETQN E
Sbjct: 489 MGLDLTNGSIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLYKDETQNEE 545

[Close]

BLAST of Sed0027734 vs. ExPASy Swiss-Prot
Match: P28769 (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=CCT1 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.5e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGEE 59
           MGLDL NG+IRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKL KDE+Q GEE
Sbjct: 489 MGLDLVNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLVKDESQ-GEE 545

[Close]

BLAST of Sed0027734 vs. ExPASy Swiss-Prot
Match: P41988 (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans OX=6239 GN=cct-1 PE=3 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 5.9e-14
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 2   GLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGEE 59
           GLDL  G+IR+N EAG++EPA+SK+K ++FATEAAITILRIDD+IKL K E   G++
Sbjct: 490 GLDLEEGTIRDNKEAGILEPALSKVKSLKFATEAAITILRIDDLIKLDKQEPLGGDD 546

[Close]

BLAST of Sed0027734 vs. ExPASy Swiss-Prot
Match: Q55BM4 (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum OX=44689 GN=tcp1 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-13
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 2   GLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           GLDL N  +RNNLEAGV+EPA++KIK I+FATE+AITILRIDD I L   E Q G+
Sbjct: 487 GLDLFNNKVRNNLEAGVLEPAIAKIKCIKFATESAITILRIDDKITLNPREQQGGD 542

[Close]

BLAST of Sed0027734 vs. ExPASy Swiss-Prot
Match: O15891 (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis OX=5908 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-12
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 2   GLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKL 49
           GLDLS G +RNN++AGV+EP +SKIK ++FATEAAITILRIDDMIKL
Sbjct: 489 GLDLSLGKVRNNVKAGVLEPMVSKIKSLRFATEAAITILRIDDMIKL 535

[Close]

BLAST of Sed0027734 vs. ExPASy Swiss-Prot
Match: P50157 (T-complex protein 1 subunit alpha (Fragment) OS=Ambystoma mexicanum OX=8296 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-12
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           +GLDL NG  R+N +AGV EP M K K ++FATEAAITILRIDD+IKLY +    G+
Sbjct: 104 IGLDLVNGKARDNKQAGVFEPTMVKTKSLKFATEAAITILRIDDLIKLYPESNDKGQ 160

[Close]

BLAST of Sed0027734 vs. ExPASy TrEMBL
Match: A0A6J1CTJ9 (CCT-alpha OS=Momordica charantia OX=3673 GN=LOC111014169 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGEE 59
           MGLDLSNG+IRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKLYKDETQN EE
Sbjct: 489 MGLDLSNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLYKDETQNEEE 546

[Close]

BLAST of Sed0027734 vs. ExPASy TrEMBL
Match: A0A6J1K8Y1 (CCT-alpha OS=Cucurbita maxima OX=3661 GN=LOC111492751 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.4e-20
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           MGLDLSNG+IRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKLYKDETQN E
Sbjct: 489 MGLDLSNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLYKDETQNEE 545

[Close]

BLAST of Sed0027734 vs. ExPASy TrEMBL
Match: A0A5A7U8G8 (CCT-alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002210 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.4e-20
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           MGLDL+NGSIRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKLYKDETQN E
Sbjct: 493 MGLDLTNGSIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLYKDETQNEE 549

[Close]

BLAST of Sed0027734 vs. ExPASy TrEMBL
Match: A0A5D3DFG1 (CCT-alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00750 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.4e-20
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           MGLDL+NGSIRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKLYKDETQN E
Sbjct: 489 MGLDLTNGSIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLYKDETQNEE 545

[Close]

BLAST of Sed0027734 vs. ExPASy TrEMBL
Match: A0A0A0LN13 (CCT-alpha OS=Cucumis sativus OX=3659 GN=Csa_2G099450 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.4e-20
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           MGLDL+NGSIRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKLYKDETQN E
Sbjct: 489 MGLDLTNGSIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLYKDETQNEE 545

[Close]

BLAST of Sed0027734 vs. TAIR 10
Match: AT3G20050.1 (T-complex protein 1 alpha subunit )

HSP 1 Score: 97.4 bits (241), Expect = 3.9e-21
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   MGLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGEE 59
           MGLDL NG+IRNNLEAGVIEPAMSK+KIIQFATEAAITILRIDDMIKL KDE+Q GEE
Sbjct: 489 MGLDLVNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLVKDESQ-GEE 545

[Close]

BLAST of Sed0027734 vs. TAIR 10
Match: AT3G11830.1 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 43.5 bits (101), Expect = 6.7e-05
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 2   GLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           G+D++ G I ++    V EPA+ KI  I  ATEAA  IL +D+ +K  K E+  G+
Sbjct: 482 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGD 537

[Close]

BLAST of Sed0027734 vs. TAIR 10
Match: AT3G11830.2 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 43.5 bits (101), Expect = 6.7e-05
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 2   GLDLSNGSIRNNLEAGVIEPAMSKIKIIQFATEAAITILRIDDMIKLYKDETQNGE 58
           G+D++ G I ++    V EPA+ KI  I  ATEAA  IL +D+ +K  K E+  G+
Sbjct: 480 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGD 535

The following BLAST results are available for this feature:

BLAST of Sed0027734 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144491.1	2.4e-20	94.83	T-complex protein 1 subunit alpha [Momordica charantia]	[more]
XP_022949009.1	9.0e-20	94.74	T-complex protein 1 subunit alpha [Cucurbita moschata] >KAG6607133.1 T-complex p...	[more]
XP_008441727.1	9.0e-20	94.74	PREDICTED: T-complex protein 1 subunit alpha [Cucumis melo] >TYK22198.1 T-comple...	[more]
XP_023524959.1	9.0e-20	94.74	T-complex protein 1 subunit alpha [Cucurbita pepo subsp. pepo] >KAG7036823.1 T-c...	[more]
XP_011649041.1	9.0e-20	94.74	T-complex protein 1 subunit alpha [Cucumis sativus] >XP_031737090.1 T-complex pr...	[more]

BLAST of Sed0027734 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P28769	5.5e-20	89.66	T-complex protein 1 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=CCT1 PE=1 S...	[more]
P41988	5.9e-14	64.91	T-complex protein 1 subunit alpha OS=Caenorhabditis elegans OX=6239 GN=cct-1 PE=...	[more]
Q55BM4	2.9e-13	67.86	T-complex protein 1 subunit alpha OS=Dictyostelium discoideum OX=44689 GN=tcp1 P...	[more]
O15891	1.4e-12	76.60	T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis OX=5908 PE=3 SV=1	[more]
P50157	2.5e-12	61.40	T-complex protein 1 subunit alpha (Fragment) OS=Ambystoma mexicanum OX=8296 PE=2...	[more]

BLAST of Sed0027734 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTJ9	1.1e-20	94.83	CCT-alpha OS=Momordica charantia OX=3673 GN=LOC111014169 PE=3 SV=1	[more]
A0A6J1K8Y1	4.4e-20	94.74	CCT-alpha OS=Cucurbita maxima OX=3661 GN=LOC111492751 PE=3 SV=1	[more]
A0A5A7U8G8	4.4e-20	94.74	CCT-alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002210 PE=3...	[more]
A0A5D3DFG1	4.4e-20	94.74	CCT-alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00750 PE=3...	[more]
A0A0A0LN13	4.4e-20	94.74	CCT-alpha OS=Cucumis sativus OX=3659 GN=Csa_2G099450 PE=3 SV=1	[more]

BLAST of Sed0027734 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20050.1	3.9e-21	89.66	T-complex protein 1 alpha subunit	[more]
AT3G11830.1	6.7e-05	41.07	TCP-1/cpn60 chaperonin family protein	[more]
AT3G11830.2	6.7e-05	41.07	TCP-1/cpn60 chaperonin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027413	GroEL-like equatorial domain superfamily	GENE3D	1.10.560.10		coord: 1..50 e-value: 1.9E-16 score: 62.2
IPR027413	GroEL-like equatorial domain superfamily	SUPERFAMILY	48592	GroEL equatorial domain-like	coord: 1..47
IPR002423	Chaperonin Cpn60/TCP-1 family	PFAM	PF00118	Cpn60_TCP1	coord: 1..47 e-value: 4.0E-11 score: 42.2
None	No IPR available	PANTHER	PTHR11353:SF203	BNAC05G32480D PROTEIN	coord: 1..54
IPR017998	Chaperone tailless complex polypeptide 1 (TCP-1)	PANTHER	PTHR11353	CHAPERONIN	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027734.1	Sed0027734.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005832	chaperonin-containing T-complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0051082	unfolded protein binding