Sed0027720 (gene) Chayote v1

Overview
NameSed0027720
Typegene
OrganismSechium edule (Chayote v1)
DescriptionGly-zipper_Omp domain-containing protein
LocationLG11: 1175351 .. 1177357 (-)
RNA-Seq ExpressionSed0027720
SyntenySed0027720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGTACACACAAATAAAAAAAAATTCTAAATAGCTATTAAAAGTTATACATTCAGCTAGCTCAAAAAAAGTATATACACATGGTTGTTATTTTTAAATAAGAAATGAACTTTCATAGAAATATAAAATTAAGTACAAGGATATACAAAATACACAGCCTCACTAAAAGGAGGCCCAAAACTACTGCAAGAACAAACCACAATCCAAAAGAATGAAACCAAGCTAACAAGGACCCAATTTTATTTGTTAATGAACCAAGCTTCTTACTTCTGGTTCTTGAAGAAACTTCTTATACAAGTTGAATGTTGCAAGATGAAACATATCCTAGGACAAACATGTTCCTTTGGTGTTTCCCAGTGCCTGGTTAAAGGGCGGGCGTGGTTACTCCGGGCATATTTGAGCGAAGCTCCAATTTTCTGGTCTAAAAAAAAAAGGAATGAAGGCTCGATATAGATTCATGTATGCTATGCTTCAACTAATCCTTAACACTCTCCATCTTTCCATCATTATCTCGGAATCCAATATCTTTGTAATATGACTCTTTGGATTCAAAGGGGAATATACATTTTTAAATTATGAATATGCAAGTGAGGAATCACGCAAATAAGAAAATCTATTTGTTAAAACACAAAGGTTTTGCATGTAATAGAAATAGGAAAAAATGAAAAGGCTGGAAAGTCAAAATAGAAAATCCAATTCAATACAGAACAAAATCCAAAGTAAATTCACATTCCTGCACAAAAACCAAATTGCAAATCAACAATTATTATCAAACAAAGTCCCAACTCTAATTTTCTAATGTAAACTTATGCTTCTGCCTTATTTATCTCGGCCACAGGGACGTCGGGGATGTCGATAGCAGCAGAAACGTAGGCGACGTTGTTGGCAAGGACGTCAGGGACGTCGTTGGCAAGGATGTCAGGGATGTCAATGACAGTAGGGACGTCGGGGACATCGTTGGCAGGGACGTTGGGGATGTTGATGGCAGCAGGGACATCGCGGATGTCGTTGGCAAGGACATTGGGGAAGTCGTTGGCACGGACGTCCGGGACGTCGTTGACAGGGACAACGGGGATGTCGTTGATAGGGAAATCGGGGATGTCGATGGCAGTAGGGACGTTGCGGACGTCGTTGGCACAGATGCCGGGGACGTCGTTGGCAGGGACGTCGGGGATGTTGATGGCAACAAGGACGTCGAGGATGTCGATGGCAGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAGACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGTAGGGACGTCGCGGACGTCGTTGGCAGGTATGTCGGGGATGTTGATGGCAACAGGACGTCGGGGATGTCATTGCAGGGGCGTCGAGGATGTCGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCTAGGGAGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAAACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGTAGGGACGTCGCGGACGTCGTTGGCAAGTATGTCGGGGATGTTGATGGCAACAGGACGTCGGGGATGTCATTGCAGGGACGTCGAGGATGTTGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGCGACGTCGGGGACGTCATTGGCAGGGATGTCGGGGATGTCGATGGCAGTAGGGATGGGGTCATCGTTGGCGGGGACGTTGAGGATGTCGATGGCAGCAGGGACGTCGGGAACGTCGATCGCCACACGGATTGCAAGGACGTTGTTGGCGGCAACGTTGTTGGCCAGAGGAGCATTCCTCTACAGGTTCAAAAAGTATTGGAGAACTTCGCGGTGGTGAAAATACAAAGTCCACAATAG

mRNA sequence

ATGGGAAGGGACGTCGGGGATGTCGATAGCAGCAGAAACGTAGGCGACGTTGTTGGCAAGGACGTCAGGGACGTCGTTGGCAAGGATGTCAGGGATGTCAATGACAGTAGGGACGTCGGGGACATCGTTGGCAGGGACGTTGGGGATGTTGATGGCAGCAGGGACATCGCGGATGTCGTTGGCAAGGACATTGGGGAAGTCGTTGGCACGGACGTCCGGGACGTCGTTGACAGGGACAACGGGGATGTCGTTGATAGGGAAATCGGGGATGTCGATGGCAGTAGGGACGTTGCGGACGTCGTTGGCACAGATGCCGGGGACGTCGTTGGCAGGGACGTCGGGGATGTTGATGGCAACAAGGACGTCGAGGATGTCGATGGCAGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAGACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGGGCGTCGAGGATGTCGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCTAGGGAGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAAACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGTAGGGACGTCGCGGACGTCGTTGGCAAGTATGTCGGGGATGTTGATGGCAACAGGACGTCGGGGATGTCATTGCAGGGACGTCGAGGATGTTGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGCGACGTCGGGGACGTCATTGGCAGGGATGTCGGGGATGTCGATGGCAGTAGGGATGGGGTCATCGTTGGCGGGGACGTTGAGGATGTCGATGGCAGCAGGGACGTCGGGAACGTCGATCGCCACACGGATTGCAAGGACGTTGTTGGCGGCAACGTTGTTGGCCAGAGGAGCATTCCTCTACAGGTTCAAAAAGTATTGGAGAACTTCGCGGTGGTGAAAATACAAAGTCCACAATAG

Coding sequence (CDS)

ATGGGAAGGGACGTCGGGGATGTCGATAGCAGCAGAAACGTAGGCGACGTTGTTGGCAAGGACGTCAGGGACGTCGTTGGCAAGGATGTCAGGGATGTCAATGACAGTAGGGACGTCGGGGACATCGTTGGCAGGGACGTTGGGGATGTTGATGGCAGCAGGGACATCGCGGATGTCGTTGGCAAGGACATTGGGGAAGTCGTTGGCACGGACGTCCGGGACGTCGTTGACAGGGACAACGGGGATGTCGTTGATAGGGAAATCGGGGATGTCGATGGCAGTAGGGACGTTGCGGACGTCGTTGGCACAGATGCCGGGGACGTCGTTGGCAGGGACGTCGGGGATGTTGATGGCAACAAGGACGTCGAGGATGTCGATGGCAGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAGACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGGGCGTCGAGGATGTCGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCTAGGGAGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAAACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGTAGGGACGTCGCGGACGTCGTTGGCAAGTATGTCGGGGATGTTGATGGCAACAGGACGTCGGGGATGTCATTGCAGGGACGTCGAGGATGTTGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGCGACGTCGGGGACGTCATTGGCAGGGATGTCGGGGATGTCGATGGCAGTAGGGATGGGGTCATCGTTGGCGGGGACGTTGAGGATGTCGATGGCAGCAGGGACGTCGGGAACGTCGATCGCCACACGGATTGCAAGGACGTTGTTGGCGGCAACGTTGTTGGCCAGAGGAGCATTCCTCTACAGGTTCAAAAAGTATTGGAGAACTTCGCGGTGGTGAAAATACAAAGTCCACAATAG

Protein sequence

MGRDVGDVDSSRNVGDVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVVGKDIGEVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVGDVDGNKDVEDVDGSRDIGDVVGRDVEGVVGRDVGDVIGRDVGDVDGTDVVDRDIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAGTSGTSLAEMSGMSMAQTSLTGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVDGSREIRYIVGRDVEGVVGSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVDRHTDCKDVVGGNVVGQRSIPLQVQKVLENFAVVKIQSPQ
Homology
BLAST of Sed0027720 vs. NCBI nr
Match: CAF2130703.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 93.6 bits (231), Expect = 3.8e-15
Identity = 115/365 (31.51%), Postives = 164/365 (44.93%), Query Frame = 0

Query: 2   GRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 61
           GRD G  D   N+G ++ G+D+  V+G+D       RD+G ++GRD     G RD   ++
Sbjct: 325 GRDTGGRDIGGNLGREIGGRDIGGVLGRD----TGGRDIGGVLGRDT----GGRDTGGIL 384

Query: 62  GKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVD-GSRDVADVVGTDAGDVVGRDVGDVD 121
           G+D G  +  G   RD   RD G  + R+ G  + G RD   + G D G ++GRD G  D
Sbjct: 385 GRDTGGRDTGGVLGRDTGGRDTGGALGRDTGGRETGGRDTGGIFGRDTGGILGRDTGGRD 444

Query: 122 GNKDVEDVDGS--RDIGDVVGRDVEGVVGRDVGDVIGRDVGDVDGTDVVDRDIEDVDGRA 181
            +    D  G+  RD G   GR+  G++GRD G ++GRD G  D   +  RD   V GR 
Sbjct: 445 TDTGGRDTGGNLGRDTG---GRNTGGILGRDTGGILGRDTGGRDTGGIFGRDTGGVLGRD 504

Query: 182 SRMSMAAGKS-------------GTLLAGTSGTSLAGTSRELLAGTSGTSLAEMSGMSMA 241
           +  S   G+              G  L G +G +L G    +L G +G     + G    
Sbjct: 505 TGGSETGGRDTGGILGRDTGGIVGGFLGGYTGGALRGEVDGVLGGETGGVCGGIIGEFFG 564

Query: 242 QTSLTGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVDGSR--EIRYIVGRDV 301
             +  G  R               SG ++     G       D  G+R  E+  I G D+
Sbjct: 565 GDA--GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTGGARGGEVGGIFGGDI 624

Query: 302 EGVVGSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVDRHTDCKDVVGGNVVG 346
           +GV G+ VG++ G D GDV G   G + GGD  D  G  D+G V    D + V  G V G
Sbjct: 625 DGVCGAAVGELFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV-LDGDTRGVRDGIVGG 667

BLAST of Sed0027720 vs. NCBI nr
Match: CAG7884074.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 92.8 bits (229), Expect = 6.5e-15
Identity = 115/361 (31.86%), Postives = 164/361 (45.43%), Query Frame = 0

Query: 2   GRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 61
           GRD G  D+  N+G ++ G+D+  V+G+D       RD+G ++GRD     G RD   ++
Sbjct: 372 GRDTGGRDTGGNLGIEIGGRDIGGVLGRD----TGGRDIGGVLGRDT----GGRDTGGIL 431

Query: 62  GKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVG---- 121
           G+D G  +  G   RD   RD G  + R+     G RD   + G D G ++GRD G    
Sbjct: 432 GRDTGGRDTGGVLGRDTGGRDTGGALGRD----TGGRDTGGIFGRDTGGILGRDTGGRET 491

Query: 122 ---DVDGNKDVEDVDGSRDIGDVV-----GRDVEGVVGRDVGDVIGRDVGDVDGTDVVDR 181
              D+ GN   +   G RD G ++     GRD  G+ GRD G V+GRD G   G++   R
Sbjct: 492 GGRDIGGNLGRD--TGGRDTGGILGRYTGGRDTGGIFGRDTGGVLGRDTG---GSETGGR 551

Query: 182 DIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAGTSGTSLAEMSGMSMAQTSL 241
           D   + GR +      G  G  L G +G +L G    +L G +G     + G      + 
Sbjct: 552 DTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGGETGGVCGGIIGEFFGGDA- 611

Query: 242 TGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVDGSR--EIRYIVGRDVEGVV 301
            G  R               SG ++     G       D  G+R  E+  I G D++GV 
Sbjct: 612 -GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTGGARGGEVGGIFGGDIDGVC 671

Query: 302 GSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVDRHTDCKDVVGGNVVGQRSI 346
           G+ VG++ G D GDV G   G + GGD  D  G  D+G V    D + V  G V G   +
Sbjct: 672 GAAVGEIFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV-LDGDTRGVRDGIVGGDTGV 699

BLAST of Sed0027720 vs. NCBI nr
Match: KAG5406900.1 (hypothetical protein IGI04_013019 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-14
Identity = 116/361 (32.13%), Postives = 163/361 (45.15%), Query Frame = 0

Query: 2   GRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 61
           GRD G  D+  N+G ++ G+D+  V+G+D       RD+G ++GRD     G RD   ++
Sbjct: 422 GRDTGGRDTGGNLGIEIGGRDIGGVLGRD----TGGRDIGGVLGRDT----GGRDTGGIL 481

Query: 62  GKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVG---- 121
           G+D G  +  G   RD   RD G  + R+     G RD   + G D G ++GRD G    
Sbjct: 482 GRDTGGRDTGGVLGRDTGGRDTGGALGRD----TGGRDTGGIFGRDTGGILGRDTGGRET 541

Query: 122 ---DVDGNKDVEDVDGSRDIG-----DVVGRDVEGVVGRDVGDVIGRDVGDVDGTDVVDR 181
              D+ GN   +   G RD G     D  GRD  G+ GRD G V+GRD G   G++   R
Sbjct: 542 GGRDIGGNLGRD--TGGRDTGGILGRDTGGRDTGGIFGRDTGGVLGRDTG---GSETGGR 601

Query: 182 DIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAGTSGTSLAEMSGMSMAQTSL 241
           D   + GR +      G  G  L G +G +L G    +L G +G     + G      + 
Sbjct: 602 DTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGGETGGVCGGIIGEFFGGDA- 661

Query: 242 TGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVDGSR--EIRYIVGRDVEGVV 301
            G  R               SG ++     G       D  G+R  E+  I G D++GV 
Sbjct: 662 -GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTGGARGGEVGGIFGGDIDGVC 721

Query: 302 GSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVDRHTDCKDVVGGNVVGQRSI 346
           G+ VG++ G D GDV G   G + GGD  D  G  D+G V    D + V  G V G   +
Sbjct: 722 GAAVGELFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV-LDGDTRGVRDGIVGGDTGV 749

BLAST of Sed0027720 vs. NCBI nr
Match: XP_022573111.1 (uncharacterized transmembrane protein DDB_G0289901-like [Brassica napus])

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-14
Identity = 116/361 (32.13%), Postives = 163/361 (45.15%), Query Frame = 0

Query: 2   GRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 61
           GRD G  D+  N+G ++ G+D+  V+G+D       RD+G ++GRD     G RD   ++
Sbjct: 337 GRDTGGRDTGGNLGIEIGGRDIGGVLGRD----TGGRDIGGVLGRDT----GGRDTGGIL 396

Query: 62  GKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVG---- 121
           G+D G  +  G   RD   RD G  + R+     G RD   + G D G ++GRD G    
Sbjct: 397 GRDTGGRDTGGVLGRDTGGRDTGGALGRD----TGGRDTGGIFGRDTGGILGRDTGGRET 456

Query: 122 ---DVDGNKDVEDVDGSRDIG-----DVVGRDVEGVVGRDVGDVIGRDVGDVDGTDVVDR 181
              D+ GN   +   G RD G     D  GRD  G+ GRD G V+GRD G   G++   R
Sbjct: 457 GGRDIGGNLGRD--TGGRDTGGILGRDTGGRDTGGIFGRDTGGVLGRDTG---GSETGGR 516

Query: 182 DIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAGTSGTSLAEMSGMSMAQTSL 241
           D   + GR +      G  G  L G +G +L G    +L G +G     + G      + 
Sbjct: 517 DTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGGETGGVCGGIIGEFFGGDA- 576

Query: 242 TGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVDGSR--EIRYIVGRDVEGVV 301
            G  R               SG ++     G       D  G+R  E+  I G D++GV 
Sbjct: 577 -GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTGGARGGEVGGIFGGDIDGVC 636

Query: 302 GSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVDRHTDCKDVVGGNVVGQRSI 346
           G+ VG++ G D GDV G   G + GGD  D  G  D+G V    D + V  G V G   +
Sbjct: 637 GAAVGELFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV-LDGDTRGVRDGIVGGDTGV 664

BLAST of Sed0027720 vs. NCBI nr
Match: VDC83200.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 89.0 bits (219), Expect = 9.4e-14
Identity = 120/380 (31.58%), Postives = 166/380 (43.68%), Query Frame = 0

Query: 1   MGRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVD-------- 60
           +GRD G  ++   +G    G++  D++G+D       RD G I GRD G  D        
Sbjct: 332 LGRDTGGRETGGILGRGTSGRETGDILGRD----TGGRDTGGIFGRDTGGRDTGGNLGIE 391

Query: 61  -GSRDIADVVGKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVD---------GSRDVAD 120
            G RDI  V+G+D G  +  G   RD   RD G V+ R+ G  D         G RD   
Sbjct: 392 IGGRDIGGVLGRDTGGRDTGGILGRDTGGRDTGGVLGRDTGGRDTGGALGRDTGGRDTGG 451

Query: 121 VVGTDAGDVVGRDVG-------DVDGNKDVEDVDGSRDIGDVV-----GRDVEGVVGRDV 180
           + G D G ++GRD G       D+ GN   +   G RD G ++     GRD  G+ GRD 
Sbjct: 452 IFGRDTGGILGRDTGGRETGGRDIGGNLGRD--TGGRDTGGILGRYTGGRDTGGIFGRDT 511

Query: 181 GDVIGRDVGDVDGTDVVDRDIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAG 240
           G V+GRD G   G++   RD   + GR +      G  G  L G +G +L G    +L G
Sbjct: 512 GGVLGRDTG---GSETGGRDTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGG 571

Query: 241 TSGTSLAEMSGMSMAQTSLTGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVD 300
            +G     + G      +  G  R               SG ++     G       D  
Sbjct: 572 ETGGVCGGIIGEFFGGDA--GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTG 631

Query: 301 GSR--EIRYIVGRDVEGVVGSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVD 346
           G+R  E+  I G D++GV G+ VG++ G D GDV G   G + GGD  D  G  D+G V 
Sbjct: 632 GARGGEVGGIFGGDIDGVCGAAVGEIFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV- 686

BLAST of Sed0027720 vs. ExPASy Swiss-Prot
Match: E9Q784 (Zinc finger CCCH domain-containing protein 13 OS=Mus musculus OX=10090 GN=Zc3h13 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.1e-04
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = 0

Query: 3   RDVGDVDSSRNVGDVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVVGK 62
           RD  D  S+R+V D   ++ RD   +DVRD  D+RD  D   RD+ DV   RD+ DV   
Sbjct: 483 RDPRDSRSARDVHDYRDREARDAHARDVRDARDARDARD--ARDIRDVRDVRDVRDV--- 542

Query: 63  DIGEVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVGDVDGNKDV 122
                   DVRDV D        R++ DV  +RDV DV   DA DV  RDV DV      
Sbjct: 543 -------RDVRDVRD-------VRDVRDVRDARDVRDV--RDARDV--RDVRDVRDGHRK 582

Query: 123 EDV 126
           EDV
Sbjct: 603 EDV 582

BLAST of Sed0027720 vs. ExPASy TrEMBL
Match: A0A3P6ADG6 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA03T14418Z PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-14
Identity = 120/380 (31.58%), Postives = 166/380 (43.68%), Query Frame = 0

Query: 1   MGRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVD-------- 60
           +GRD G  ++   +G    G++  D++G+D       RD G I GRD G  D        
Sbjct: 332 LGRDTGGRETGGILGRGTSGRETGDILGRD----TGGRDTGGIFGRDTGGRDTGGNLGIE 391

Query: 61  -GSRDIADVVGKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVD---------GSRDVAD 120
            G RDI  V+G+D G  +  G   RD   RD G V+ R+ G  D         G RD   
Sbjct: 392 IGGRDIGGVLGRDTGGRDTGGILGRDTGGRDTGGVLGRDTGGRDTGGALGRDTGGRDTGG 451

Query: 121 VVGTDAGDVVGRDVG-------DVDGNKDVEDVDGSRDIGDVV-----GRDVEGVVGRDV 180
           + G D G ++GRD G       D+ GN   +   G RD G ++     GRD  G+ GRD 
Sbjct: 452 IFGRDTGGILGRDTGGRETGGRDIGGNLGRD--TGGRDTGGILGRYTGGRDTGGIFGRDT 511

Query: 181 GDVIGRDVGDVDGTDVVDRDIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAG 240
           G V+GRD G   G++   RD   + GR +      G  G  L G +G +L G    +L G
Sbjct: 512 GGVLGRDTG---GSETGGRDTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGG 571

Query: 241 TSGTSLAEMSGMSMAQTSLTGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVD 300
            +G     + G      +  G  R               SG ++     G       D  
Sbjct: 572 ETGGVCGGIIGEFFGGDA--GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTG 631

Query: 301 GSR--EIRYIVGRDVEGVVGSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVD 346
           G+R  E+  I G D++GV G+ VG++ G D GDV G   G + GGD  D  G  D+G V 
Sbjct: 632 GARGGEVGGIFGGDIDGVCGAAVGEIFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV- 686

BLAST of Sed0027720 vs. ExPASy TrEMBL
Match: M4DS83 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-13
Identity = 121/380 (31.84%), Postives = 164/380 (43.16%), Query Frame = 0

Query: 1   MGRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVD-------- 60
           +GRD G  ++    G    G++  D++G+D       RD G I GRD G  D        
Sbjct: 332 LGRDTGGRETGGIFGRGTSGRETGDILGRD----TGGRDTGGIFGRDTGGRDTGGNLGIE 391

Query: 61  -GSRDIADVVGKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVD---------GSRDVAD 120
            G RDI  V+G+D G  +  G   RD   RD G V+ R+ G  D         G RD   
Sbjct: 392 IGGRDIGGVLGRDTGGRDTGGILGRDTGGRDTGGVLGRDTGGRDTGGALGRDTGGRDTGG 451

Query: 121 VVGTDAGDVVGRDVG-------DVDGNKDVEDVDGSRDIG-----DVVGRDVEGVVGRDV 180
           + G D G ++GRD G       D+ GN   +   G RD G     D  GRD  G+ GRD 
Sbjct: 452 IFGRDTGGILGRDTGGRETGGRDIGGNLGRD--TGGRDTGGILGRDTGGRDTGGIFGRDT 511

Query: 181 GDVIGRDVGDVDGTDVVDRDIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAG 240
           G V+GRD G   G++   RD   + GR +      G  G  L G +G +L G    +L G
Sbjct: 512 GGVLGRDTG---GSETGGRDTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGG 571

Query: 241 TSGTSLAEMSGMSMAQTSLTGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVD 300
            +G     + G      +  G  R               SG ++     G       D  
Sbjct: 572 ETGGVCGGIIGEFFGGDA--GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTG 631

Query: 301 GSR--EIRYIVGRDVEGVVGSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVD 346
           G+R  E+  I G D++GV G+ VG++ G D GDV G   G + GGD  D  G  D+G V 
Sbjct: 632 GARGGEVGGIFGGDIDGVCGAAVGELFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV- 686

BLAST of Sed0027720 vs. ExPASy TrEMBL
Match: A0A401QH01 (Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_0025253 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.4e-12
Identity = 77/173 (44.51%), Postives = 102/173 (58.96%), Query Frame = 0

Query: 4   DVGDVDSSRNVGDVVGK-DVRDVVG-KDVRDVNDSRDVGDIVG-RDVGDVDGSRDIADVV 63
           DVGDV    NVGDV GK DV +V G +DV DV+   DVG++ G  DVG+  G  D+ +V 
Sbjct: 49  DVGDVSGDENVGDVSGKEDVGNVSGEEDVGDVSGEEDVGNVSGEEDVGNATGKEDVGNVS 108

Query: 64  G-KDIGEVVGTDVRDVVDRDNGDVV-DREIGDVDGSRDVADVVG-TDAGDVVG-RDVGDV 123
           G +D+G V G D       D G+V  + ++G+V G  DV +V G  D GDV G  DVG+V
Sbjct: 109 GEEDVGNVSGED-------DVGNVTGEEDVGNVRGEEDVGNVSGEEDVGDVSGEEDVGNV 168

Query: 124 DGNKDVEDVDGSRDIGDVVG-RDVEGVVG-RDVGDVIGR-DVGDVDGTDVVDR 167
            G +DV +  G  D+G+V G  DV    G  DVGDV G+ DV  V+G + V +
Sbjct: 169 SGEEDVGNASGEEDVGNVSGEEDVGNASGEEDVGDVTGKEDVWSVNGEEDVGK 214

BLAST of Sed0027720 vs. ExPASy TrEMBL
Match: A0A6P0MTT3 (Uncharacterized protein OS=Symploca sp. SIO2C1 OX=2607783 GN=F6K14_34160 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-10
Identity = 86/176 (48.86%), Postives = 94/176 (53.41%), Query Frame = 0

Query: 1   MGRDVGDVDSSRNVGDVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 60
           MG DVGD D    VG VVG DV D VG  V  V     VG +VG DVG V G      VV
Sbjct: 1   MGDDVGD-DVGGVVGGVVGDDVGDDVGGVVGGV-----VGGVVGDDVGGVVGG-----VV 60

Query: 61  GKDIGEVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVGDVDGNK 120
           G D+G VVG  V  VV    G VV   +GD     DV D VG D G VVG D GD DG+ 
Sbjct: 61  GDDVGGVVGGVVGGVVGGVVGGVVGGVVGD-----DVGDDVGDDVGGVVGDDDGDDDGD- 120

Query: 121 DVEDVDG---SRDIGDVVGRDVEGVVGRDVGDVIGRDVGDVDGTDVVDRDIEDVDG 174
           DV  V G      +G VVG  V GVVG  VG ++G  VGDV G DV D   +DV G
Sbjct: 121 DVGGVVGGVVGGVVGGVVGGVVGGVVGGVVGVLVGGVVGDVVGDDVGDDVGDDVGG 159

BLAST of Sed0027720 vs. ExPASy TrEMBL
Match: A0A3S1HVN5 (Gly-zipper_Omp domain-containing protein OS=Elysia chlorotica OX=188477 GN=EGW08_005232 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-10
Identity = 88/177 (49.72%), Postives = 98/177 (55.37%), Query Frame = 0

Query: 1   MGRDVGDVDSSRNVGDVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 60
           +GR VG V  S  VG VVG+ V  VVG  V  V     VG +VGR VG + G R +  VV
Sbjct: 59  VGRVVGSVVGS-VVGRVVGRVVGSVVGSVVGSV-----VGSVVGRVVGKMAG-RVLGSVV 118

Query: 61  GKDIGEVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVGDVDGNK 120
           G  IG VVG  V  VV R  G VV R +G V G R V  VVG   G VVGR VG V G +
Sbjct: 119 GSVIGSVVGRVVGSVVGRVVGSVVGRVVGSVVG-RVVGSVVGRVVGSVVGRVVGSVVG-R 178

Query: 121 DVEDVDGSRDIGDVVGRDVEGVVGRDVGDVIGRDVGDVDGT---DVVDRDIEDVDGR 175
            V  V G R +G VVGR V  VVGR VG V+GR VG V G     VV R +  V GR
Sbjct: 179 VVGSVVG-RVVGSVVGRVVGSVVGRVVGSVVGRVVGSVVGRVVGSVVGRVVGSVVGR 225

BLAST of Sed0027720 vs. TAIR 10
Match: AT5G55680.1 (glycine-rich protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.1e-04
Identity = 52/138 (37.68%), Postives = 65/138 (47.10%), Query Frame = 0

Query: 39  VGDIVGRDVGDVDGSRDIADVVGKDIGEVVG--TDVRDVVDRDNGDVVDREIGDVDGSRD 98
           VG I+G ++GD  G      VVG D GEV G  T V DVV  + G+V   E GD  G   
Sbjct: 45  VGLIIGAEIGDFPGI-----VVGGDTGEVAGVETGVVDVVGEETGEVTGDETGDFRGDAM 104

Query: 99  VADVVGTDAGDVVGRDVGDVDGNKDVEDVDGSRDIGDVVGRDVEGVVGRDVGDVIGRDVG 158
           V DV G  AGD    + GD +G   V +  G  +   V   D +G      G+V G   G
Sbjct: 105 VRDVTGEVAGD----ETGDFNGEAMVREETG--EFVGVKTGDFDGDAVVQDGEVAGERTG 164

Query: 159 DVDG-TDVVDRDIEDVDG 174
           D+DG T     + ED  G
Sbjct: 165 DIDGVTKAAGEETEDFSG 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAF2130703.13.8e-1531.51unnamed protein product [Brassica napus][more]
CAG7884074.16.5e-1531.86unnamed protein product [Brassica rapa][more]
KAG5406900.11.1e-1432.13hypothetical protein IGI04_013019 [Brassica rapa subsp. trilocularis][more]
XP_022573111.11.1e-1432.13uncharacterized transmembrane protein DDB_G0289901-like [Brassica napus][more]
VDC83200.19.4e-1431.58unnamed protein product [Brassica rapa][more]
Match NameE-valueIdentityDescription
E9Q7844.1e-0441.46Zinc finger CCCH domain-containing protein 13 OS=Mus musculus OX=10090 GN=Zc3h13... [more]
Match NameE-valueIdentityDescription
A0A3P6ADG64.5e-1431.58Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA03T14418Z PE=4 SV=... [more]
M4DS831.3e-1331.84Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1[more]
A0A401QH019.4e-1244.51Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_00... [more]
A0A6P0MTT31.8e-1048.86Uncharacterized protein OS=Symploca sp. SIO2C1 OX=2607783 GN=F6K14_34160 PE=4 SV... [more]
A0A3S1HVN53.0e-1049.72Gly-zipper_Omp domain-containing protein OS=Elysia chlorotica OX=188477 GN=EGW08... [more]
Match NameE-valueIdentityDescription
AT5G55680.11.1e-0437.68glycine-rich protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027720.1Sed0027720.1mRNA