Sed0027689 (gene) Chayote v1

Overview
NameSed0027689
Typegene
OrganismSechium edule (Chayote v1)
DescriptionAlways early, putative isoform 3
LocationLG12: 5056555 .. 5057305 (-)
RNA-Seq ExpressionSed0027689
SyntenySed0027689
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACGAGAGCTGATAATGCAGACTATGAGCTTGGAAAAAATACTCGTGAGATTCACAAAAAGGGTAAAAGGTACTATGGAAAGAAGCCAGGAGTTGACTAAAGAATGTACAACCACTTGGATGACATTAAGGAAGCTTGCAGTGGGACTGAAGAGGGTAAAAGGTTATGCAGTTGAGGGAAGATTTGGATGTAAAATCTGTGAGCTCCTCTTTCAAAGGCCCAAGGAAGAGAAGTAAGAAAGCTCTGTTTGGAGGTACGCTTAAAAATATATTTAAATTGAGTTGCCTACCCTTTTATATTCGGCATTTAACTGTTCTATTAATTTATTAGGATGGTTTTTTTGATAATTTACAATTTCGATGATGTATAAAATTACAAAAGAAAGGGGTTTACCCTCCCTGGAAGAGGCCAGATTATCAGCATAGCTTTTGTTTTTTGACGGAAGTTACTTTGGTGATTTTTCTTCCTTTGTTAATGACGTTTCAATTAGAATGGTTTTTCAAATGCACGCATGATTCACCTTTTCTTCTTTTTGATGTTTTCGTAACTGAACAACCAAGTTTGTGTTCTTATCATTGGTTGTTCTCTTTTCAGATGAATGCTCAGCATTTGATGCACTGCAAACTTTAGCTGATGTGTTTCTGATGATGCAAGACGCTACTGCTGATACTGGTAAAAATTATTCTTGA

mRNA sequence

ATGAGTACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACGAGAGCTGATAATGCAGACTATGAGCTTGGAAAAAATACTCGTGAGATTCACAAAAAGGATGAATGCTCAGCATTTGATGCACTGCAAACTTTAGCTGATGTGTTTCTGATGATGCAAGACGCTACTGCTGATACTGGTAAAAATTATTCTTGA

Coding sequence (CDS)

ATGAGTACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACGAGAGCTGATAATGCAGACTATGAGCTTGGAAAAAATACTCGTGAGATTCACAAAAAGGATGAATGCTCAGCATTTGATGCACTGCAAACTTTAGCTGATGTGTTTCTGATGATGCAAGACGCTACTGCTGATACTGGTAAAAATTATTCTTGA

Protein sequence

MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKKDECSAFDALQTLADVFLMMQDATADTGKNYS
Homology
[Close]
BLAST of Sed0027689 vs. NCBI nr
Match: XP_022973711.1 (protein ALWAYS EARLY 3-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 58/136 (42.65%), Postives = 61/136 (44.85%), Query Frame = 0 

Query: 1   MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKK------------------- 60
           MSTKFRCSEMDEGGCELSLGST ADNADY+ GKNTREI +K                   
Sbjct: 275 MSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHL 334

Query: 61  --------------------------------------------------DECSAFDALQ 68
                                                             DECSAFDALQ
Sbjct: 335 DDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQ 394

[Close]
BLAST of Sed0027689 vs. NCBI nr
Match: XP_022973710.1 (protein ALWAYS EARLY 3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 58/136 (42.65%), Postives = 61/136 (44.85%), Query Frame = 0 

Query: 1   MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKK------------------- 60
           MSTKFRCSEMDEGGCELSLGST ADNADY+ GKNTREI +K                   
Sbjct: 271 MSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHL 330

Query: 61  --------------------------------------------------DECSAFDALQ 68
                                                             DECSAFDALQ
Sbjct: 331 DDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQ 390

[Close]
BLAST of Sed0027689 vs. NCBI nr
Match: XP_022936778.1 (protein ALWAYS EARLY 3-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 58/136 (42.65%), Postives = 61/136 (44.85%), Query Frame = 0 

Query: 1   MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKK------------------- 60
           MSTKFRCSEMDEGGCELSLGST ADNADY+ GKNTREI +K                   
Sbjct: 278 MSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHL 337

Query: 61  --------------------------------------------------DECSAFDALQ 68
                                                             DECSAFDALQ
Sbjct: 338 DDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQ 397

[Close]
BLAST of Sed0027689 vs. NCBI nr
Match: XP_022936768.1 (protein ALWAYS EARLY 3-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 58/136 (42.65%), Postives = 61/136 (44.85%), Query Frame = 0 

Query: 1   MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKK------------------- 60
           MSTKFRCSEMDEGGCELSLGST ADNADY+ GKNTREI +K                   
Sbjct: 278 MSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHL 337

Query: 61  --------------------------------------------------DECSAFDALQ 68
                                                             DECSAFDALQ
Sbjct: 338 DDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQ 397

[Close]
BLAST of Sed0027689 vs. NCBI nr
Match: XP_023539796.1 (protein ALWAYS EARLY 3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 58/136 (42.65%), Postives = 61/136 (44.85%), Query Frame = 0 

Query: 1   MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKK------------------- 60
           MSTKFRCSEMDEGGCELSLGST ADNADY+ GKNTREI +K                   
Sbjct: 274 MSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHL 333

Query: 61  --------------------------------------------------DECSAFDALQ 68
                                                             DECSAFDALQ
Sbjct: 334 DDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQ 393

[Close]
BLAST of Sed0027689 vs. ExPASy TrEMBL
Match: A0A6J1I8A2 (protein ALWAYS EARLY 3-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111472290 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 58/136 (42.65%), Postives = 61/136 (44.85%), Query Frame = 0 

Query: 1   MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKK------------------- 60
           MSTKFRCSEMDEGGCELSLGST ADNADY+ GKNTREI +K                   
Sbjct: 275 MSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHL 334

Query: 61  --------------------------------------------------DECSAFDALQ 68
                                                             DECSAFDALQ
Sbjct: 335 DDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQ 394

[Close]
BLAST of Sed0027689 vs. ExPASy TrEMBL
Match: A0A6J1IFF8 (protein ALWAYS EARLY 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472290 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 58/136 (42.65%), Postives = 61/136 (44.85%), Query Frame = 0 

Query: 1   MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKK------------------- 60
           MSTKFRCSEMDEGGCELSLGST ADNADY+ GKNTREI +K                   
Sbjct: 275 MSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHL 334

Query: 61  --------------------------------------------------DECSAFDALQ 68
                                                             DECSAFDALQ
Sbjct: 335 DDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQ 394

[Close]
BLAST of Sed0027689 vs. ExPASy TrEMBL
Match: A0A6J1I9E0 (protein ALWAYS EARLY 3-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472290 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 58/136 (42.65%), Postives = 61/136 (44.85%), Query Frame = 0 

Query: 1   MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKK------------------- 60
           MSTKFRCSEMDEGGCELSLGST ADNADY+ GKNTREI +K                   
Sbjct: 275 MSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHL 334

Query: 61  --------------------------------------------------DECSAFDALQ 68
                                                             DECSAFDALQ
Sbjct: 335 DDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQ 394

[Close]
BLAST of Sed0027689 vs. ExPASy TrEMBL
Match: A0A6J1IC18 (protein ALWAYS EARLY 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472290 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 58/136 (42.65%), Postives = 61/136 (44.85%), Query Frame = 0 

Query: 1   MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKK------------------- 60
           MSTKFRCSEMDEGGCELSLGST ADNADY+ GKNTREI +K                   
Sbjct: 271 MSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHL 330

Query: 61  --------------------------------------------------DECSAFDALQ 68
                                                             DECSAFDALQ
Sbjct: 331 DDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQ 390

[Close]
BLAST of Sed0027689 vs. ExPASy TrEMBL
Match: A0A6J1FEN0 (protein ALWAYS EARLY 3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443249 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 58/136 (42.65%), Postives = 61/136 (44.85%), Query Frame = 0 

Query: 1   MSTKFRCSEMDEGGCELSLGSTRADNADYELGKNTREIHKK------------------- 60
           MSTKFRCSEMDEGGCELSLGST ADNADY+ GKNTREI +K                   
Sbjct: 274 MSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHL 333

Query: 61  --------------------------------------------------DECSAFDALQ 68
                                                             DECSAFDALQ
Sbjct: 334 DDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQ 393

The following BLAST results are available for this feature:
BLAST of Sed0027689 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022973711.12.4e-1442.65protein ALWAYS EARLY 3-like isoform X3 [Cucurbita maxima][more]
XP_022973710.12.4e-1442.65protein ALWAYS EARLY 3-like isoform X2 [Cucurbita maxima][more]
XP_022936778.12.4e-1442.65protein ALWAYS EARLY 3-like isoform X4 [Cucurbita moschata][more]
XP_022936768.12.4e-1442.65protein ALWAYS EARLY 3-like isoform X3 [Cucurbita moschata][more]
XP_023539796.12.4e-1442.65protein ALWAYS EARLY 3-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Sed0027689 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0027689 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I8A21.2e-1442.65protein ALWAYS EARLY 3-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC1114722... [more]
A0A6J1IFF81.2e-1442.65protein ALWAYS EARLY 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114722... [more]
A0A6J1I9E01.2e-1442.65protein ALWAYS EARLY 3-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114722... [more]
A0A6J1IC181.2e-1442.65protein ALWAYS EARLY 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114722... [more]
A0A6J1FEN01.2e-1442.65protein ALWAYS EARLY 3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
BLAST of Sed0027689 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027689.1Sed0027689.1mRNA