Sed0027667 (gene) Chayote v1

Overview


Name	Sed0027667
Type	gene
Organism	Sechium edule (Chayote v1)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	LG08: 38097355 .. 38099806 (-)
RNA-Seq Expression	Sed0027667
Synteny	Sed0027667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAAAGTGTCGAATTTCTCAACCCTTTTTGGCGTTCACAACTCTCGATTCGGTCGCGTCTCCGTCTTCTCCGTTTCCTCCGCCGAGATTCTTCAATGGCTTCTTCCACCATAAGTCGATGGCTGAGGCCTGAGGTTAACAAATCACTCAGATCTTCCGTCTAATTTACTTTCCGATCCTCTTTTGTTAATCGATCGATGTTTCTTTGTTTGATTGTGAATTCATTTTTAGGTTTACCCACTCTTTGCGGCGGTGGGAGTGGCCGTCGGAATCTGCGGATTTCAGTTAGTACGTAACATCTGCATCAATCCTGAAGTCAGGTCCTCTCCGAGTTCTCGCTATTTTTAGCTTTCCTTTTGTGTTTTAATAACTTCCTTATTGTTTTGTGATTTGATCTTGATATTTTTGTGGTACATGACGATATTGGATTTGATGATGAATGATACGAAATTTTGGACATAGATAGTTCCTTTGCCCCTTTGTTATCCTATGACTAACAATCGGGGGTAATGAGATTCGAATTCATGACCTTCTGCTTCATGAATATATATTTTTGTCGTAGGTGACCCACCGATTTTTTTTAGTGTTTCTTTTTTTATAAATAAAACTATCGTTATTGTTTTTTTTTAAACAGTAACTTTCATTGATGCTTGAAAAATTACAATTAAGCTATGAAAATAGTTACAATAGATGATGCCATTGGGCAAATAAAAAAGATAAGTCACAGTTACAAAAAGGAAGAATTCTATGACACCAAGTAATTCCAGCATGTATAGTAGCTTCAATGATGGTGGGGAGAGTGGCTAGTGTATCATTTAAAATCCTGTTGTTTCTTTCACCCAACATTTCCAAAAGAATGCATAAATCAAATTCAACTAGAGTTTCTTTTGTGTTCTTGAACGGATGCCCAACCATAATGCAGAGGAGGAAAGATCCAATATTTTGAGGACGTACAAACGACCATCCAAATAAACCAAACAGTTGATTCCCCATTAACATTACCTAGATCTTCTCCTGGTTGAGCTATTTCTTTAAAATGCCAGATTATGATGCATGTATAATAATGTATAAACTAGAATCATAAATTGATTTAATCTTGTTGAAGGAGGATTTTTTTATTTTTTTTATTTTTATTTGTCTTTGTTAATTGCTGCGGCTTAACTACAAATGAATGTTTTTTTTTTCTTTTAGCAGTTGTTGTAATTTGTAACATAGATTATCTGACCGAATTGAAATTATTATATAATTAGTTTCAATTTCCTAGTTAGGAAAGCCGAAACTGTAAAGATTTGCAAATGGAATTTACGAGAAATTCAATTAGTCTCCCCCCCATAATCTTATTGTTTGCTTTTATATTTCATGGGTTGCATCTTTTGCATCATTGTGAAGAAGAGACTGATAATTGCCTATCAATGAAGTGGGATGTGAATACAATTTATGATTGGTATTGTAGTCAAAGAGAATTAAGAAGTCATGAGATAGTTGCTAAAAAGAATTGGTTTCTTCAGCACCCAAATATTGTATGATCATTTATCTAAGTTGGAACCATCATGGGGTGGCTTAATTGGTCAAAGAGGGTCTTGGGGTGCATAAGGTGATGAGTTCAATCTTCATGGTGGCCACCTATACCTAAGAATTAATTTCCTACGGGTTTCCTTGACATCCAAATGTTGTAGAGTCAAATGGTATGTTCTTTGACATTAGTCGAGGTGCGCGCAAGCTAGTTCGGACAATCACGGATATCAAAAACCAAAAAAACAATTTTTTTTTTTTTTTATCTAAGTTGGCTCGGACACTCATGTATATAAGAAAACCAATTTCTTTACTTATTTTTTTTAGTTCAAGAGAGTGAGAGATTGAATTCATGACTTCGGTCATACACCTATCTCTTATGTCAGTTGAACTATGTTCTTGTTAGCAATTTCTTTATTGAGTAAACTTAAAGGTTCATCGAAATAAACTATATTTTTTTTATTATAACCTTATGAACACACACCTTTTCTGATCCTATGTAAACCAGAGTGAACAAGGAGAATAGAGCTGCTGGAGTCCTAGATAACTTTGCAGAGGGAGAGAAGTATACCGAGCATTTTCTGAGGAAATTTGTTCGCAACAAGTCCCCCGAAATTATGCCATCGATCAACAACTTCTTCACCGACCCAAAACGAAACTAAGATGCTACATGAATGAACTACTACACATTAGTTTGGATATACATTCAAATTTGGATTGTTGGCAGTAAACTATGCTGCTGGTGCGTTTGCTTTTATTGTTAATCTGAGAAAGTTTGAGAACAATGGTTTTGATGAAATAAACTGTAACTGAACCCAATTTTGATTTCAGTTATTGTGAAATTTTGAGGCTGGTCTTTGCTCGTTTTGAATTGACTGATTCTACAACTTATAACTGTGTTTGGAGTTTCTCTGTTTCAGTCTTGGACACACATTCTTCT

mRNA sequence

TATAAAGTGTCGAATTTCTCAACCCTTTTTGGCGTTCACAACTCTCGATTCGGTCGCGTCTCCGTCTTCTCCGTTTCCTCCGCCGAGATTCTTCAATGGCTTCTTCCACCATAAGTCGATGGCTGAGGCCTGAGGTTTACCCACTCTTTGCGGCGGTGGGAGTGGCCGTCGGAATCTGCGGATTTCAGTTAGTACGTAACATCTGCATCAATCCTGAAGTCAGAGTGAACAAGGAGAATAGAGCTGCTGGAGTCCTAGATAACTTTGCAGAGGGAGAGAAGTATACCGAGCATTTTCTGAGGAAATTTGTTCGCAACAAGTCCCCCGAAATTATGCCATCGATCAACAACTTCTTCACCGACCCAAAACGAAACTAAGATGCTACATGAATGAACTACTACACATTAGTTTGGATATACATTCAAATTTGGATTGTTGGCAGTAAACTATGCTGCTGGTGCGTTTGCTTTTATTGTTAATCTGAGAAAGTTTGAGAACAATGGTTTTGATGAAATAAACTGTAACTGAACCCAATTTTGATTTCAGTTATTGTGAAATTTTGAGGCTGGTCTTTGCTCGTTTTGAATTGACTGATTCTACAACTTATAACTGTGTTTGGAGTTTCTCTGTTTCAGTCTTGGACACACATTCTTCT

Coding sequence (CDS)

ATGGCTTCTTCCACCATAAGTCGATGGCTGAGGCCTGAGGTTTACCCACTCTTTGCGGCGGTGGGAGTGGCCGTCGGAATCTGCGGATTTCAGTTAGTACGTAACATCTGCATCAATCCTGAAGTCAGAGTGAACAAGGAGAATAGAGCTGCTGGAGTCCTAGATAACTTTGCAGAGGGAGAGAAGTATACCGAGCATTTTCTGAGGAAATTTGTTCGCAACAAGTCCCCCGAAATTATGCCATCGATCAACAACTTCTTCACCGACCCAAAACGAAACTAA

Protein sequence

MASSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEGEKYTEHFLRKFVRNKSPEIMPSINNFFTDPKRN

Homology

[Close]

BLAST of Sed0027667 vs. NCBI nr
Match: XP_022924187.1 (uncharacterized protein LOC111431708 [Cucurbita moschata] >XP_023519445.1 uncharacterized protein LOC111782858 [Cucurbita pepo subsp. pepo] >KAG6584243.1 hypothetical protein SDJN03_20175, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019839.1 hypothetical protein SDJN02_18803, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEG 60
          MA ST++RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV KENRAAGVLDNFAEG
Sbjct: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPKRN 94
          EKYTEHFLRKFVRNKSPEIMPSINNFFTDP RN
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Sed0027667 vs. NCBI nr
Match: XP_022137737.1 (uncharacterized protein LOC111009092 [Momordica charantia])

HSP 1 Score: 184.5 bits (467), Expect = 4.2e-43
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEG 60
          MA ST+SRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV+KENR+AGVLDNFAEG
Sbjct: 1  MAPSTVSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRSAGVLDNFAEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPKRN 94
          EKY EHFLRKFVRNKSPEIMPSINNFFTDP RN
Sbjct: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Sed0027667 vs. NCBI nr
Match: XP_008437938.1 (PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo] >KAA0055200.1 uncharacterized protein E6C27_scaffold80G00410 [Cucumis melo var. makuwa] >TYJ99130.1 uncharacterized protein E5676_scaffold248G003360 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 7.1e-43
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 3  SSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEGEK 62
          SST+SRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRV+KENRAAGVLDNFAEGEK
Sbjct: 4  SSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAEGEK 63

Query: 63 YTEHFLRKFVRNKSPEIMPSINNFFTDPKRN 94
          Y+EHFLRKFVRNKSPEIMPSINNFFTDP RN
Sbjct: 64 YSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of Sed0027667 vs. NCBI nr
Match: XP_023000853.1 (uncharacterized protein LOC111495175 [Cucurbita maxima])

HSP 1 Score: 183.7 bits (465), Expect = 7.1e-43
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MASSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEG 60
          MA ST++RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV KENRAAGVLDNF EG
Sbjct: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFDEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPKRN 94
          EKYTEHFLRKFVRNKSPEIMPSINNFFTDP RN
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Sed0027667 vs. NCBI nr
Match: KAE8124153.1 (hypothetical protein FH972_019061 [Carpinus fangiana])

HSP 1 Score: 182.2 bits (461), Expect = 2.1e-42
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEG 60
          MASS  SRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRVNKE+RAAGVLDNFAEG
Sbjct: 1  MASSATSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVNKESRAAGVLDNFAEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPKRN 94
          EKY+EHFLRKFVRNKSPEIMPSIN+FFTDP RN
Sbjct: 61 EKYSEHFLRKFVRNKSPEIMPSINSFFTDPSRN 93

[Close]

BLAST of Sed0027667 vs. ExPASy TrEMBL
Match: A0A6J1E888 (uncharacterized protein LOC111431708 OS=Cucurbita moschata OX=3662 GN=LOC111431708 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.0e-44
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEG 60
          MA ST++RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV KENRAAGVLDNFAEG
Sbjct: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPKRN 94
          EKYTEHFLRKFVRNKSPEIMPSINNFFTDP RN
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Sed0027667 vs. ExPASy TrEMBL
Match: A0A6J1C941 (uncharacterized protein LOC111009092 OS=Momordica charantia OX=3673 GN=LOC111009092 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEG 60
          MA ST+SRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV+KENR+AGVLDNFAEG
Sbjct: 1  MAPSTVSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRSAGVLDNFAEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPKRN 94
          EKY EHFLRKFVRNKSPEIMPSINNFFTDP RN
Sbjct: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Sed0027667 vs. ExPASy TrEMBL
Match: A0A5A7UIX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003360 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 3  SSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEGEK 62
          SST+SRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRV+KENRAAGVLDNFAEGEK
Sbjct: 4  SSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAEGEK 63

Query: 63 YTEHFLRKFVRNKSPEIMPSINNFFTDPKRN 94
          Y+EHFLRKFVRNKSPEIMPSINNFFTDP RN
Sbjct: 64 YSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of Sed0027667 vs. ExPASy TrEMBL
Match: A0A6J1KNV1 (uncharacterized protein LOC111495175 OS=Cucurbita maxima OX=3661 GN=LOC111495175 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MASSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEG 60
          MA ST++RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV KENRAAGVLDNF EG
Sbjct: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFDEG 60

Query: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPKRN 94
          EKYTEHFLRKFVRNKSPEIMPSINNFFTDP RN
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Sed0027667 vs. ExPASy TrEMBL
Match: A0A1S3AVT0 (uncharacterized protein LOC103483212 OS=Cucumis melo OX=3656 GN=LOC103483212 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 3  SSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEGEK 62
          SST+SRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRV+KENRAAGVLDNFAEGEK
Sbjct: 4  SSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAEGEK 63

Query: 63 YTEHFLRKFVRNKSPEIMPSINNFFTDPKRN 94
          Y+EHFLRKFVRNKSPEIMPSINNFFTDP RN
Sbjct: 64 YSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of Sed0027667 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-35
Identity = 68/84 (80.95%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 7  SRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEGEKYTEH 66
          SRWLRPEVYPLFAA GVAVGIC F L+RNI  NPEVR  KENRAAG+LDN AEGEKY E+
Sbjct: 3  SRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKEN 62

Query: 67 FLRKFVRNKSPEIMPSINNFFTDP 91
          FLRKFVRNK PEIMP +N FFTDP
Sbjct: 63 FLRKFVRNKKPEIMPGLNKFFTDP 86

[Close]

BLAST of Sed0027667 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-22
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 6  ISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVNKENRAAGVLDNFAEGEKYTE 65
          + RW+RPEVYPL  A+G    +  FQL RN  +NP+ R+NKE+R  G+L+N  EGEKY +
Sbjct: 1  MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 66 HFLRKFVRNKSPEIMPSINNFFT 89
          H  RK++R + P++MPS+N FF+
Sbjct: 61 HNFRKYLRTRQPQVMPSLNRFFS 83

The following BLAST results are available for this feature:

BLAST of Sed0027667 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924187.1	1.4e-43	94.62	uncharacterized protein LOC111431708 [Cucurbita moschata] >XP_023519445.1 unchar...	[more]
XP_022137737.1	4.2e-43	93.55	uncharacterized protein LOC111009092 [Momordica charantia]	[more]
XP_008437938.1	7.1e-43	94.51	PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo] >KAA0055200.1 unc...	[more]
XP_023000853.1	7.1e-43	93.55	uncharacterized protein LOC111495175 [Cucurbita maxima]	[more]
KAE8124153.1	2.1e-42	92.47	hypothetical protein FH972_019061 [Carpinus fangiana]	[more]

BLAST of Sed0027667 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E888	7.0e-44	94.62	uncharacterized protein LOC111431708 OS=Cucurbita moschata OX=3662 GN=LOC1114317...	[more]
A0A6J1C941	2.0e-43	93.55	uncharacterized protein LOC111009092 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A5A7UIX5	3.5e-43	94.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1KNV1	3.5e-43	93.55	uncharacterized protein LOC111495175 OS=Cucurbita maxima OX=3661 GN=LOC111495175...	[more]
A0A1S3AVT0	3.5e-43	94.51	uncharacterized protein LOC103483212 OS=Cucumis melo OX=3656 GN=LOC103483212 PE=...	[more]

BLAST of Sed0027667 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48140.1	1.2e-35	80.95	B12D protein	[more]
AT3G29970.1	1.5e-22	50.60	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 11..78 e-value: 3.1E-26 score: 91.0
None	No IPR available	PANTHER	PTHR33417:SF13	OS07G0274700 PROTEIN	coord: 4..92
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 4..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027667.1	Sed0027667.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane