Sed0027644 (gene) Chayote v1

Overview


Name	Sed0027644
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H2B
Location	LG01: 6460680 .. 6461547 (-)
RNA-Seq Expression	Sed0027644
Synteny	Sed0027644

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAATTTACATCAAACCACTGCCGCTTATATTCGATTCAGACCTTTGTCAATTTAAGCACAATCCGATGGCACCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAACCGGCGTCCGACAAGGCGGAGGAAAAGAAATCCGCCGCCGAGAAAGCTCCGGCGGAGAAGAAGCCGAAGGCCGGGAAGAAGCTGCCGAAGGAGGGCGGCGGCGCCGCTGCCGGAGACAAGAAGAAGAAGAGAACGAAGAAGAGCGTAGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGCTTCATCAACGATATCTTCGAGAAGCTTGCTCAAGAGTCATCCAAGTTGGCTCGCTACAACAAGAAGCCCACCATCACGTCTCGCGAGATCCAGACCGCCGTCAGGCTGGTTCTTCCCGGTGAGTTGGCTAAGCACGCTGTTTCTGAGGGCACCAAGGCCGTCACCAAGTTCACCAGTTCTTGAATCTTGAGTTAGGTTAAGTGAAGCTTTTGAATAGTTGCTATTAGGTGAAGCTTTCGAATTAGGGTTTGAAACTCTGTTTTGATTGTTAAGATCTGTTTGTGTATTTGATACACTTTGGATTTGTCAATTTCTTCACATATATCTGCTTGAGATCTGTAAATGCATCGTTTTATGTACCAGTAATGAAAGTAATTTCGTAAACCTATGGTCATGTCTTCTTCGATTTAGCTTTTTTAGCTCTTATTTCTATTCTCGTTCAATGAGTTATGAGTTTGATAGATTCAAGTTTTATCATAAATAAGATTTTTCCCTAATGAGTTCATGGGTTATGTTTTTCTTCAA

mRNA sequence

TATAATTTACATCAAACCACTGCCGCTTATATTCGATTCAGACCTTTGTCAATTTAAGCACAATCCGATGGCACCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAACCGGCGTCCGACAAGGCGGAGGAAAAGAAATCCGCCGCCGAGAAAGCTCCGGCGGAGAAGAAGCCGAAGGCCGGGAAGAAGCTGCCGAAGGAGGGCGGCGGCGCCGCTGCCGGAGACAAGAAGAAGAAGAGAACGAAGAAGAGCGTAGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGCTTCATCAACGATATCTTCGAGAAGCTTGCTCAAGAGTCATCCAAGTTGGCTCGCTACAACAAGAAGCCCACCATCACGTCTCGCGAGATCCAGACCGCCGTCAGGCTGGTTCTTCCCGGTGAGTTGGCTAAGCACGCTGTTTCTGAGGGCACCAAGGCCGTCACCAAGTTCACCAGTTCTTGAATCTTGAGTTAGGTTAAGTGAAGCTTTTGAATAGTTGCTATTAGGTGAAGCTTTCGAATTAGGGTTTGAAACTCTGTTTTGATTGTTAAGATCTGTTTGTGTATTTGATACACTTTGGATTTGTCAATTTCTTCACATATATCTGCTTGAGATCTGTAAATGCATCGTTTTATGTACCAGTAATGAAAGTAATTTCGTAAACCTATGGTCATGTCTTCTTCGATTTAGCTTTTTTAGCTCTTATTTCTATTCTCGTTCAATGAGTTATGAGTTTGATAGATTCAAGTTTTATCATAAATAAGATTTTTCCCTAATGAGTTCATGGGTTATGTTTTTCTTCAA

Coding sequence (CDS)

ATGGCACCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAACCGGCGTCCGACAAGGCGGAGGAAAAGAAATCCGCCGCCGAGAAAGCTCCGGCGGAGAAGAAGCCGAAGGCCGGGAAGAAGCTGCCGAAGGAGGGCGGCGGCGCCGCTGCCGGAGACAAGAAGAAGAAGAGAACGAAGAAGAGCGTAGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGCTTCATCAACGATATCTTCGAGAAGCTTGCTCAAGAGTCATCCAAGTTGGCTCGCTACAACAAGAAGCCCACCATCACGTCTCGCGAGATCCAGACCGCCGTCAGGCTGGTTCTTCCCGGTGAGTTGGCTAAGCACGCTGTTTCTGAGGGCACCAAGGCCGTCACCAAGTTCACCAGTTCTTGA

Protein sequence

MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of Sed0027644 vs. NCBI nr
Match: KAG7010568.1 (Histone H2B.6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.5 bits (654), Expect = 1.4e-64
Identity = 145/153 (94.77%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDK-AEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTK 60
           MAPKA+KKPAEKKPA++K AEEKKS AEKAPAEKKPKAGKKLPKEGG AAAGDKKKKR+K
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT S
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTKS 153

[Close]

BLAST of Sed0027644 vs. NCBI nr
Match: XP_038900415.1 (histone H2B [Benincasa hispida])

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-64
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDK-AEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTK 60
           MAPK++KKPAEKKPASDK AEEKK+ AEKAPAEKKPKAGKKLPKE GGAAAGDKKKKRTK
Sbjct: 1   MAPKSDKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKE-GGAAAGDKKKKRTK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Sed0027644 vs. NCBI nr
Match: XP_004143093.1 (histone H2B [Cucumis sativus] >KGN47176.1 hypothetical protein Csa_020799 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 3.2e-64
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDK-AEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTK 60
           MAPKA+KKPAEKKPAS+K AEEKK+ AEKAPAEKKPKAGKKLPKE GGAAAGDKKKKRTK
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKE-GGAAAGDKKKKRTK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Sed0027644 vs. NCBI nr
Match: XP_023512034.1 (histone H2B.11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.4 bits (651), Expect = 3.2e-64
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDK-AEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTK 60
           MAPKA+KKPAEKKPA++K AEEKKS AEKAPAEKKPKAGKKLPKEGG AAAGDKKKKR+K
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151

[Close]

BLAST of Sed0027644 vs. NCBI nr
Match: XP_022943869.1 (histone H2B.11-like [Cucurbita moschata])

HSP 1 Score: 255.4 bits (651), Expect = 3.2e-64
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDK-AEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTK 60
           MAPKA+KKPAEKKPA++K AEEKKS AEKAPAEKKPKAGKKLPKEGG AAAGDKKKKR+K
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151

[Close]

BLAST of Sed0027644 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 246.5 bits (628), Expect = 1.9e-64
Identity = 142/152 (93.42%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTKK 60
           MAPKAEKKPAEKKP    AEEKK+ AEKAPAEKKPKAGKKLPKE GGAAAGDKKKKR KK
Sbjct: 1   MAPKAEKKPAEKKP----AEEKKAVAEKAPAEKKPKAGKKLPKE-GGAAAGDKKKKRVKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0027644 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 244.2 bits (622), Expect = 9.5e-64
Identity = 140/152 (92.11%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTKK 60
           MAPKAEKKPAEKKPAS+K  E+KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0027644 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 241.1 bits (614), Expect = 8.1e-63
Identity = 138/152 (90.79%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTKK 60
           MAPK EKKPAEKKPA +K   K + AEKAPAEKKPKAGKKLPKE GG+AAG+KKKKR+KK
Sbjct: 1   MAPKGEKKPAEKKPAEEK---KSTVAEKAPAEKKPKAGKKLPKE-GGSAAGEKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Sed0027644 vs. ExPASy Swiss-Prot
Match: O23629 (Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3)

HSP 1 Score: 241.1 bits (614), Expect = 8.1e-63
Identity = 138/152 (90.79%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTKK 60
           MAP+AEKKPAEKKPA++K  E+KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  KK
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0027644 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-61
Identity = 136/152 (89.47%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTKK 60
           MAPK EKKPAEKKPA +K   K + AEKAPAEKKPKAGKKLPKE GG+AAG+KKKKR+KK
Sbjct: 1   MAPKGEKKPAEKKPAEEK---KSTVAEKAPAEKKPKAGKKLPKE-GGSAAGEKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148

[Close]

BLAST of Sed0027644 vs. ExPASy TrEMBL
Match: A0A0A0KHC9 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.5e-64
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDK-AEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTK 60
           MAPKA+KKPAEKKPAS+K AEEKK+ AEKAPAEKKPKAGKKLPKE GGAAAGDKKKKRTK
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKE-GGAAAGDKKKKRTK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Sed0027644 vs. ExPASy TrEMBL
Match: A0A6J1FVH6 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111448469 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.5e-64
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDK-AEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTK 60
           MAPKA+KKPAEKKPA++K AEEKKS AEKAPAEKKPKAGKKLPKEGG AAAGDKKKKR+K
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151

[Close]

BLAST of Sed0027644 vs. ExPASy TrEMBL
Match: A0A5D3DK48 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00500 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.6e-64
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDK-AEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTK 60
           MAPKA+KKPAEKKPASDK AEEKK+ AEKAPAEKKPKAGKKLPKE GGAAAGDKKKKR K
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKE-GGAAAGDKKKKRMK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Sed0027644 vs. ExPASy TrEMBL
Match: A0A6J1JHJ9 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111484551 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.6e-64
Identity = 143/152 (94.08%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDK-AEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTK 60
           MAPKA+KKPAEKKPA++K AEEKKS AEKAPAEKKPKAGKKLPKEGG AA+GDKKKKR+K
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAASGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTA 152

[Close]

BLAST of Sed0027644 vs. ExPASy TrEMBL
Match: A0A1S3BIZ0 (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103490588 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.6e-64
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDK-AEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTK 60
           MAPKA+KKPAEKKPASDK AEEKK+ AEKAPAEKKPKAGKKLPKE GGAAAGDKKKKR K
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKE-GGAAAGDKKKKRMK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Sed0027644 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 244.2 bits (622), Expect = 6.8e-65
Identity = 140/152 (92.11%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTKK 60
           MAPKAEKKPAEKKPAS+K  E+KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0027644 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 241.1 bits (614), Expect = 5.7e-64
Identity = 138/152 (90.79%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTKK 60
           MAP+AEKKPAEKKPA++K  E+KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  KK
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0027644 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 234.6 bits (597), Expect = 5.4e-62
Identity = 137/152 (90.13%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTKK 60
           MAPKAEKKPAEKKP      E+KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPV-----EEKSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Sed0027644 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 232.3 bits (591), Expect = 2.7e-61
Identity = 133/152 (87.50%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEGGGAAAGDKKKKRTKK 60
           MAP+AEKKPAEKK A+++  E+  AAEKAPAEKKPKAGKKLP +     AGDKKKKR+KK
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPK----EAGDKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Sed0027644 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-59
Identity = 133/154 (86.36%), Postives = 137/154 (88.96%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAEEKKSAAEKAPAEKKPKAGKKLPKEG--GGAAAGDKKKKRT 60
           MAPKA KKPAEKKPA     E++  AEKAPAEKKPKAGKKLPKE   GG    +KKKKR 
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGV---EKKKKRV 60

Query: 61  KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTIT 120
           KKS ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTIT
Sbjct: 61  KKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTIT 120

Query: 121 SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

The following BLAST results are available for this feature:

BLAST of Sed0027644 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010568.1	1.4e-64	94.77	Histone H2B.6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038900415.1	2.4e-64	96.08	histone H2B [Benincasa hispida]	[more]
XP_004143093.1	3.2e-64	96.08	histone H2B [Cucumis sativus] >KGN47176.1 hypothetical protein Csa_020799 [Cucum...	[more]
XP_023512034.1	3.2e-64	95.36	histone H2B.11 [Cucurbita pepo subsp. pepo]	[more]
XP_022943869.1	3.2e-64	95.36	histone H2B.11-like [Cucurbita moschata]	[more]

BLAST of Sed0027644 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	1.9e-64	93.42	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
P40283	9.5e-64	92.11	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
Q1S9I9	8.1e-63	90.79	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
O23629	8.1e-63	90.79	Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3	[more]
Q1SWQ1	1.2e-61	89.47	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]

BLAST of Sed0027644 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHC9	1.5e-64	96.08	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1	[more]
A0A6J1FVH6	1.5e-64	95.36	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111448469 PE=3 SV=1	[more]
A0A5D3DK48	2.6e-64	96.08	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00500 PE...	[more]
A0A6J1JHJ9	2.6e-64	94.08	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111484551 PE=3 SV=1	[more]
A0A1S3BIZ0	2.6e-64	96.08	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103490588 PE=3 SV=1	[more]

BLAST of Sed0027644 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59910.1	6.8e-65	92.11	Histone superfamily protein	[more]
AT3G45980.1	5.7e-64	90.79	Histone superfamily protein	[more]
AT3G46030.1	5.4e-62	90.13	Histone superfamily protein	[more]
AT1G07790.1	2.7e-61	87.50	Histone superfamily protein	[more]
AT2G28720.1	1.1e-59	86.36	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 65..83 score: 80.55 coord: 84..104 score: 75.74 coord: 106..123 score: 76.51 coord: 123..136 score: 92.45 coord: 136..149 score: 92.65
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 55..151 e-value: 4.0E-73 score: 258.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..152
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 120..142
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 8..128 e-value: 2.6E-22 score: 79.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 25..152 e-value: 3.6E-60 score: 203.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 38..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR23428:SF258	HISTONE H2B	coord: 5..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027644.1	Sed0027644.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity