Sed0027639 (gene) Chayote v1

Overview
NameSed0027639
Typegene
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
LocationLG08: 26736830 .. 26737842 (-)
RNA-Seq ExpressionSed0027639
SyntenySed0027639
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGGTAGAAGCTGCTGGGGAAGATCTAAATGGAAATAAAATGGTAAATGATTCTGTTGATGGCAAGGAAGTTAAAGCCAGGAAGTTCAGGAGATTTAAACATCCTGATGAAAGGGAGGGGAATAGTCATCTTGCCATGGATATTGTTAAAGGCAAAAGGAAACTTGAACTAGATGAAGTGAATACTGTGGTAGGAAAGAGGTCCCGAATCAACGAGATGAGTCATTTGAGTTTGGTGGTGGCTGGTGATCAGCTCTACCTATCATTATGAAAACATTATGCTGGAATGTTCGTGGAGTGAATAATTCACGGGCGTTCGCGGAACTTCTGGAGGTAGTTCGCCTTCAGAAGCCCAATTTATTGTTTCTTTCCGAAACTAAGTGTCGAAGGAATAGAATTAATTTTTTGAGATCTCGTTTGAATTTTAATAAGAGTTTTTAATTGATTGTATAGGCTTGAGGGGAGGCCTCGGTTTATTCTGGTCAGATGATATTGATTTGCGGATCCTTTCTTCCTCTCAAAATCATATTGATTGTGATATTTCAATGAATAATGGTAATTGGCGGTTTACTGGCATATATGGCTTCCCGGTTAATCACTTAAAGGCATTGACTTGGAAATTATTGAACGACTTGTCTTTGAATGTTGGGCTTTGGAGTTCTGAGAAGAAAGGTGGATCCAAAGAGATATCTCTTTGTATGGAGGAGTTTCGTGAGGCTACTGAGGATATTGGCCTTCAGGATCTAGGTTTGGTTGGTGAAATCTTTACTTGGCGCAACAGATGGACAAACGGTGCTCCTATATTCAAACGGCTGGATAGATTTTTGGAAAGTAAAGACTTTTGTAATCTTTTCCCCCATTTGAAGGTTGTCCATCTGGATTGGTATGCTTCAGATCACAAACCGATCTGTTTTATTTCTAATGGTGTTGAAAGCTCCTCTCAATATGTTAAGCCTATGTTCAGATTTGAAAAGTTTTGGACAGATGAGCCTTCTTGTATTGATTTAG

mRNA sequence

ATGGAGGAGGTAGAAGCTGCTGGGGAAGATCTAAATGGAAATAAAATGGTAAATGATTCTGTTGATGGCAAGGAAGTTAAAGCCAGGAAGTTCAGGAGATTTAAACATCCTGATGAAAGGGAGGGGAATAGTCATCTTGCCATGGATATTGTTAAAGGCAAAAGGAAACTTGAACTAGATGAAGTGAATACTGTGGTAGGAAAGAGGTCCCGAATCAACGAGATGAGTCATTTGAGTTTGGTGGTGGCTGGCTTGAGGGGAGGCCTCGGTTTATTCTGGTCAGATGATATTGATTTGCGGATCCTTTCTTCCTCTCAAAATCATATTGATTGTGATATTTCAATGAATAATGGTAATTGGCGGTTTACTGGCATATATGGCTTCCCGGTTAATCACTTAAAGGCATTGACTTGGAAATTATTGAACGACTTGTCTTTGAATGTTGGGCTTTGGAGTTCTGAGAAGAAAGGTGGATCCAAAGAGATATCTCTTTGTATGGAGGAGTTTCGTGAGGCTACTGAGGATATTGGCCTTCAGGATCTAGGTTTGGTTGGTGAAATCTTTACTTGGCGCAACAGATGGACAAACGGTGCTCCTATATTCAAACGGCTGGATAGATTTTTGGAAAATTTGAAAAGTTTTGGACAGATGAGCCTTCTTGTATTGATTTAG

Coding sequence (CDS)

ATGGAGGAGGTAGAAGCTGCTGGGGAAGATCTAAATGGAAATAAAATGGTAAATGATTCTGTTGATGGCAAGGAAGTTAAAGCCAGGAAGTTCAGGAGATTTAAACATCCTGATGAAAGGGAGGGGAATAGTCATCTTGCCATGGATATTGTTAAAGGCAAAAGGAAACTTGAACTAGATGAAGTGAATACTGTGGTAGGAAAGAGGTCCCGAATCAACGAGATGAGTCATTTGAGTTTGGTGGTGGCTGGCTTGAGGGGAGGCCTCGGTTTATTCTGGTCAGATGATATTGATTTGCGGATCCTTTCTTCCTCTCAAAATCATATTGATTGTGATATTTCAATGAATAATGGTAATTGGCGGTTTACTGGCATATATGGCTTCCCGGTTAATCACTTAAAGGCATTGACTTGGAAATTATTGAACGACTTGTCTTTGAATGTTGGGCTTTGGAGTTCTGAGAAGAAAGGTGGATCCAAAGAGATATCTCTTTGTATGGAGGAGTTTCGTGAGGCTACTGAGGATATTGGCCTTCAGGATCTAGGTTTGGTTGGTGAAATCTTTACTTGGCGCAACAGATGGACAAACGGTGCTCCTATATTCAAACGGCTGGATAGATTTTTGGAAAATTTGAAAAGTTTTGGACAGATGAGCCTTCTTGTATTGATTTAG

Protein sequence

MEEVEAAGEDLNGNKMVNDSVDGKEVKARKFRRFKHPDEREGNSHLAMDIVKGKRKLELDEVNTVVGKRSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNGNWRFTGIYGFPVNHLKALTWKLLNDLSLNVGLWSSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLENLKSFGQMSLLVLI
Homology
BLAST of Sed0027639 vs. NCBI nr
Match: XP_023886153.1 (uncharacterized protein LOC111998282 [Quercus suber])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-20
Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 0

Query: 87  GGLGLFWSDDIDLRILSSSQNHIDCDISM-NNGNWRFTGIYGFPVNHLKALTWKLLNDLS 146
           GGL LFW ++IDL + +SS+NHID  +     G WRFTG YG PV H +  +W LL +L+
Sbjct: 490 GGLALFWKNNIDLHVETSSKNHIDAVVGKGKEGAWRFTGFYGEPVTHKRLESWNLLRELN 549

Query: 147 LNVGL-W-----------SSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNR 206
             + L W            SEK GGS      M+ FR+A ++ G  DLG  G  FTW+  
Sbjct: 550 SRMTLPWICMGDFNEITRQSEKLGGSVRSHSQMQLFRDAIDECGFMDLGFTGSQFTWKKH 609

Query: 207 WTNGAPIFKRLDRFLEN 211
           + +G  +++RLDR L N
Sbjct: 610 FNDGHSVWERLDRGLAN 626

BLAST of Sed0027639 vs. NCBI nr
Match: XP_030936690.1 (uncharacterized protein LOC115961942 [Quercus lobata])

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-20
Identity = 64/170 (37.65%), Postives = 86/170 (50.59%), Query Frame = 0

Query: 54  KRKLELDEVNTVVGKRSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHIDCDI 113
           KR L  D ++ V     RIN             GGL LFW D +DL + +SS+NHID  +
Sbjct: 48  KRNLSFDNLHFV----ERINR-----------AGGLALFWKDSVDLHVETSSKNHIDAVV 107

Query: 114 SM-NNGNWRFTGIYGFPVNHLKALTWKLLNDLSLNVGL-W-----------SSEKKGGSK 173
                G WR TG YG PV H +  +W LL +L+  + L W            SEK GGS 
Sbjct: 108 GKGKEGAWRITGFYGEPVTHKRMESWNLLRELNSRMTLPWLCFGDFNEIIRQSEKLGGSV 167

Query: 174 EISLCMEEFREATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLEN 211
                M+ FREA ++ G  DLG  G  FTW+  + +G  +++RLDR + N
Sbjct: 168 RSQAQMQIFREAIDECGFMDLGFTGSQFTWKRHFNDGHSVWERLDRGMAN 202

BLAST of Sed0027639 vs. NCBI nr
Match: XP_030939909.1 (uncharacterized protein LOC115964800 [Quercus lobata])

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-19
Identity = 66/161 (40.99%), Postives = 84/161 (52.17%), Query Frame = 0

Query: 59  LDEVNTVVGKRSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNG 118
           LDEV  + G R  +    H  +      GGL LFW  D DL+++SSS NHID  I+    
Sbjct: 39  LDEVR-LTGLRDSLRFGHHHGVSCLTRGGGLVLFWKKDFDLQVMSSSHNHIDILINRGKV 98

Query: 119 N-WRFTGIYGFPVNHLKALTWKLLNDLS------------LNVGLWSSEKKGGSKEISLC 178
           N WRFTG YG P   L+  +W LL DL+             N  L S EK GG       
Sbjct: 99  NVWRFTGFYGAPETQLRMESWDLLRDLNNRFSVPWLVGGDFNKLLKSQEKLGGWLRPYGQ 158

Query: 179 MEEFREATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDR 207
           M +FREA ++ GL DLG VG  FTW   + +G  +++RLDR
Sbjct: 159 MLKFREALDECGLFDLGFVGCKFTWHKTYPDGGIVWERLDR 198

BLAST of Sed0027639 vs. NCBI nr
Match: XP_030924932.1 (uncharacterized protein LOC115951959 [Quercus lobata])

HSP 1 Score: 105.5 bits (262), Expect = 5.9e-19
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 0

Query: 87  GGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLNDLS 146
           GGL LFW  D+DL+++SSS NHID  ++  N N WRFTG YG P   L+  +W LL DL+
Sbjct: 66  GGLVLFWKKDLDLQVMSSSHNHIDALVNRGNENGWRFTGFYGAPETQLRWKSWDLLRDLN 125

Query: 147 ------------LNVGLWSSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNR 206
                        N  L + EK GG       M++FRE  ++ GL DLG  G  FTW  +
Sbjct: 126 NRFSIPWLCGGDFNELLKTHEKLGGRLRPYGQMQKFREVLDECGLFDLGFEGNKFTWFKK 185

Query: 207 WTNGAPIFKRLDRFLENL 212
           + +G  +++RLDR + ++
Sbjct: 186 FPDGGVVWERLDRAVSSV 203

BLAST of Sed0027639 vs. NCBI nr
Match: KAG0523282.1 (hypothetical protein BDA96_07G110100 [Sorghum bicolor])

HSP 1 Score: 105.5 bits (262), Expect = 5.9e-19
Identity = 59/153 (38.56%), Postives = 83/153 (54.25%), Query Frame = 0

Query: 84  GLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLN 143
           G  GGL + W   +D+ + S S+NHID ++S   GN WRFTGIYG P   +K  TW+LL 
Sbjct: 33  GKGGGLAVLWRRGVDVVLRSKSKNHIDMEVSETRGNPWRFTGIYGEPQEAMKWKTWQLLQ 92

Query: 144 DLS--------------LNVGLWSSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIF 203
           DL+               N  L+  EK+GG       M+ F++A E   L DLG  G +F
Sbjct: 93  DLAAQHQNNQAWLCAGDFNEVLYQHEKEGGVPRPQNSMDRFKQALEVSELHDLGFEGNVF 152

Query: 204 TWRNRWTNG-APIFKRLDRFLENLKSFGQMSLL 221
           TWRN+ + G + I +RLDR + N +   +  L+
Sbjct: 153 TWRNKQSKGESHIRERLDRAVANFEWLAKFPLV 185

BLAST of Sed0027639 vs. ExPASy TrEMBL
Match: A0A1R3GNW3 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_24647 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.1e-18
Identity = 56/152 (36.84%), Postives = 74/152 (48.68%), Query Frame = 0

Query: 69  RSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNN--GNWRFTGIY 128
           R R    +   +   G  GGL +FW D +DL+++S SQ+HID  +  N     WR TG Y
Sbjct: 477 RRRCKMHACFGVSATGRSGGLAMFWDDSVDLQLISFSQHHIDMWVDENQRLAKWRLTGFY 536

Query: 129 GFPVNHLKALTWKLLNDLSL------------NVGLWSSEKKGGSKEISLCMEEFREATE 188
           G      + L+W LL    L            N  LW +EK GG +     M  FREA +
Sbjct: 537 GEADTGRRHLSWDLLRQFVLHDEKNWFCFGDFNELLWQAEKDGGRERPEAQMVAFREALD 596

Query: 189 DIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDR 207
           D GL D+G  G +FTW+    N   I +RLDR
Sbjct: 597 DCGLYDIGYRGNMFTWKRGMGNNEFIHERLDR 628

BLAST of Sed0027639 vs. ExPASy TrEMBL
Match: A0A2N9EH45 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1761 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-17
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 0

Query: 84  GLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNG-NWRFTGIYGFPVNHLKALTWKLLN 143
           G  GGL L W+D   + + + SQNHID  + ++NG  WRFTG YGFP  H K  +W L++
Sbjct: 559 GRSGGLALLWNDPAQIIVQNFSQNHIDSHVCLDNGIMWRFTGFYGFPEGHRKRESWALMD 618

Query: 144 DLS-------LNVG----LWSSEKKGGSKEISLC-MEEFREATEDIGLQDLGLVGEIFTW 203
            L        L++G    + S E++ G   +S+  + EF +      L DLG  G  FTW
Sbjct: 619 KLHGMSSFPWLSMGDYNEIVSLEERSGQASVSMARLREFGDVLNRCELVDLGFRGVPFTW 678

Query: 204 RNRWTNGAPIFKRLDRFLENLKSFGQMSL 220
            NR   GA + KRLDR + N++     +L
Sbjct: 679 DNRRDGGALVMKRLDRAVANVRWMDMFNL 707

BLAST of Sed0027639 vs. ExPASy TrEMBL
Match: B8BD62 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30475 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-17
Identity = 57/141 (40.43%), Postives = 74/141 (52.48%), Query Frame = 0

Query: 84  GLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNG-NWRFTGIYGFPVNHLKALTWKLLN 143
           G  G L LFW  ++DL + S S NHID  +   +G  WR+TG+YG P    +  TW+LL 
Sbjct: 13  GASGSLALFWKKNLDLTVQSMSMNHIDAVVKEADGFIWRYTGVYGEPRQGDRKNTWELLR 72

Query: 144 DL------------SLNVGLWSSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTW 203
            L            + N  L+S EK GGS+     M  FR+A E+  L DLG VG+ FTW
Sbjct: 73  SLKTQMALPWVVSGNFNEILFSCEKVGGSQRSESLMHNFRDALEECDLHDLGFVGDAFTW 132

Query: 204 RNRWTNGAPIFK-RLDRFLEN 211
           RN   +     K RLDR + N
Sbjct: 133 RNNHHDVHMYIKERLDRAVAN 153

BLAST of Sed0027639 vs. ExPASy TrEMBL
Match: A0A7N2KQ83 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-17
Identity = 56/133 (42.11%), Postives = 71/133 (53.38%), Query Frame = 0

Query: 87  GGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLNDLS 146
           GGL LFW  D DL+++SSS NHID  ++    N WRFTG YG     L+  +W LL DL+
Sbjct: 275 GGLVLFWKKDFDLQVMSSSHNHIDVLVNRGKENVWRFTGFYGALETQLRMESWNLLRDLN 334

Query: 147 ------------LNVGLWSSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNR 206
                        N  L S EK GG       M +F EA ++ GL DLG VG  FTW   
Sbjct: 335 NRFSIPWLCGGDFNELLKSHEKMGGRLRPYGQMRKFCEALDECGLFDLGFVGNKFTWFKT 394

BLAST of Sed0027639 vs. ExPASy TrEMBL
Match: F4NCI4 (Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-17
Identity = 57/138 (41.30%), Postives = 73/138 (52.90%), Query Frame = 0

Query: 86  RGGLGLFWSDDIDLRILSSSQNHIDCDISMN-NGNWRFTGIYGFPVNHLKALTWKLLNDL 145
           RGGL + W  +I ++++S S NHID  +     G WRFTGIYG+P    K  T  LL+ L
Sbjct: 70  RGGLAMLWRSEIKVQVMSMSSNHIDIVVGEEAQGEWRFTGIYGYPEEEHKDKTGALLSAL 129

Query: 146 S------------LNVGLWSSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRN 205
           +             N+ L +SEKKGG    S   + FR A E+    DLG VG  FTW N
Sbjct: 130 ARASRRPWLCGGDFNLMLVASEKKGGDGFNSREADIFRNAMEECHFMDLGFVGYEFTWTN 189

Query: 206 RWTNGAPIFKRLDRFLEN 211
                A I +RLDRF+ N
Sbjct: 190 NRGGDANIQERLDRFVAN 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023886153.11.8e-2041.61uncharacterized protein LOC111998282 [Quercus suber][more]
XP_030936690.12.4e-2037.65uncharacterized protein LOC115961942 [Quercus lobata][more]
XP_030939909.13.5e-1940.99uncharacterized protein LOC115964800 [Quercus lobata][more]
XP_030924932.15.9e-1940.58uncharacterized protein LOC115951959 [Quercus lobata][more]
KAG0523282.15.9e-1938.56hypothetical protein BDA96_07G110100 [Sorghum bicolor][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1R3GNW37.1e-1836.84Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_24647 PE=4 SV... [more]
A0A2N9EH451.6e-1737.58Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
B8BD624.6e-1740.43Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30475 PE=4... [more]
A0A7N2KQ834.6e-1742.11Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
F4NCI44.6e-1741.30Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 82..208

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027639.1Sed0027639.1mRNA