Sed0027638 (gene) Chayote v1

Overview
NameSed0027638
Typegene
OrganismSechium edule (Chayote v1)
DescriptionWound-responsive family protein
LocationLG04: 43494612 .. 43495681 (+)
RNA-Seq ExpressionSed0027638
SyntenySed0027638
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACTAAACCCATTGGCCCCGTCTATAAATACGGCTCCAATTTCTCCATTTTTCTATCAACGGAAAACCAGAGTGATTTTTCATTTTCGATTAAGAACTTTCATCAAAGTGCTTTGAGGTTGAAGATGAGTTACCTTAACAGAGTTGGAATGGCGGCGAGCGTAGCGGTGGCTCAAGGCCACACGGAGATCGGATCCAAGTGGAAGTCCGGACTCAAATCTCTCCGGCAGGGGCGGCGGCTTTTGGTTTCCGGTGAGAATACGGCGGATCTCCGGCCGCTTTCCAGTTTGGTTGGATCGGAAGGTCCTGAAGCCGTCCGGAGCTGTGACGCCGCCGAGAGGATAGCGCAGACCGATGATTCTCTCCGGCGAGTTATGTACTTGAACTGTTGGGGCCAGGGCTGATTTGGTGAGATGAAATTCAAGGTGATGCAAGAACGGATCTGGTCGGCGATGCGATCGGAGTTGGGGCTGATCAGGCGACATGAAATGGAAGGTATTAGATCTGGAATTGATGCGATGAAGATGAAGAATTGTGATCTATAACTTGAAGGATCGCTTTGTAGATTGGGGATAATTGTACAGAAATAGAGAATTGAACGGTTTCCACAAATAATAGAAATCTTGATTCTCTTTACTTTGCTTAATTTGAAGTTTATGTGCCTTTAATTAAGCTTAAACTGAACTGAACTGAACTGAAGCAACTTTGTGATAATTGGAAACATAATCAGATCCAGATCTGTGCTAGTTGCTTGATAAATATAAAACTGATTTGGGTCTGGAAATAATTGTGCTGAAGAGCGGATGTTTAAGATCAGATCTTTCACAGTGGACAGGGAATTTGATAGATTAGAAATCAAAGAACTATTTAATCTGCAATTAAAGATCAAGCAATCGAGATTTAGAGCCAAGTGATGAAATTCAATTTCTGTTTTCATGTGAATTATATCAATTTGTAGTTCAAGAATTTCCTCCACAGTTTCTGAAATCCATAAGATATCATGGAAATTAAAATGAAACCATCGTTGGTTTGTCTTGGTATTAAAAATGAGCATTCAAGATTCAGGGAATT

mRNA sequence

GACTAAACCCATTGGCCCCGTCTATAAATACGGCTCCAATTTCTCCATTTTTCTATCAACGGAAAACCAGAGTGATTTTTCATTTTCGATTAAGAACTTTCATCAAAGTGCTTTGAGGTTGAAGATGAGTTACCTTAACAGAGTTGGAATGGCGGCGAGCGTAGCGGTGGCTCAAGGCCACACGGAGATCGGATCCAAGTGGAAGTCCGGACTCAAATCTCTCCGGCAGGGGCGGCGGCTTTTGGTTTCCGGTGAGAATACGGCGGATCTCCGGCCGCTTTCCAGTTTGGTTGGATCGGAAGGTCCTGAAGCCGTCCGGAGCTGTGACGCCGCCGAGAGGATAGCGCAGACCGATGATTCTCTCCGGCGAGTTATGTACTTGAACTGTTGGGGCCAGGGCTGATTTGGTGAGATGAAATTCAAGGTGATGCAAGAACGGATCTGGTCGGCGATGCGATCGGAGTTGGGGCTGATCAGGCGACATGAAATGGAAGGTATTAGATCTGGAATTGATGCGATGAAGATGAAGAATTGTGATCTATAACTTGAAGGATCGCTTTGTAGATTGGGGATAATTGTACAGAAATAGAGAATTGAACGGTTTCCACAAATAATAGAAATCTTGATTCTCTTTACTTTGCTTAATTTGAAGTTTATGTGCCTTTAATTAAGCTTAAACTGAACTGAACTGAACTGAAGCAACTTTGTGATAATTGGAAACATAATCAGATCCAGATCTGTGCTAGTTGCTTGATAAATATAAAACTGATTTGGGTCTGGAAATAATTGTGCTGAAGAGCGGATGTTTAAGATCAGATCTTTCACAGTGGACAGGGAATTTGATAGATTAGAAATCAAAGAACTATTTAATCTGCAATTAAAGATCAAGCAATCGAGATTTAGAGCCAAGTGATGAAATTCAATTTCTGTTTTCATGTGAATTATATCAATTTGTAGTTCAAGAATTTCCTCCACAGTTTCTGAAATCCATAAGATATCATGGAAATTAAAATGAAACCATCGTTGGTTTGTCTTGGTATTAAAAATGAGCATTCAAGATTCAGGGAATT

Coding sequence (CDS)

ATGAGTTACCTTAACAGAGTTGGAATGGCGGCGAGCGTAGCGGTGGCTCAAGGCCACACGGAGATCGGATCCAAGTGGAAGTCCGGACTCAAATCTCTCCGGCAGGGGCGGCGGCTTTTGGTTTCCGGTGAGAATACGGCGGATCTCCGGCCGCTTTCCAGTTTGGTTGGATCGGAAGGTCCTGAAGCCGTCCGGAGCTGTGACGCCGCCGAGAGGATAGCGCAGACCGATGATTCTCTCCGGCGAGTTATGTACTTGAACTGTTGGGGCCAGGGCTGA

Protein sequence

MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEGPEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG
Homology
BLAST of Sed0027638 vs. NCBI nr
Match: KAG7011951.1 (hypothetical protein SDJN02_26859, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.2 bits (422), Expect = 6.8e-38
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIG KWKSGLKSLRQGRRLL SGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
          P AVRS DA ER+AQT+DSLRRVMYLNCWGQG
Sbjct: 61 PGAVRSLDADERMAQTEDSLRRVMYLNCWGQG 92

BLAST of Sed0027638 vs. NCBI nr
Match: KAG6572339.1 (hypothetical protein SDJN03_29067, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIG KWKSGLKSLRQGRRLL SGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
          P AVR+ DA ER+AQT+DSLRRVMYLNCWGQG
Sbjct: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 92

BLAST of Sed0027638 vs. NCBI nr
Match: KAG6589197.1 (hypothetical protein SDJN03_17762, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022897.1 hypothetical protein SDJN02_16633, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.6 bits (418), Expect = 2.0e-37
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIG KWKSGLKS RQGR+LL SGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
          PEAV+S DAAERIAQ+++SLRRVMYLNCWGQG
Sbjct: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 92

BLAST of Sed0027638 vs. NCBI nr
Match: KAE8645762.1 (hypothetical protein Csa_020269 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 2.0e-37
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIG KWKSGLKSLRQGRRLL SGEN+ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
            +VRSCD  ERIAQ++DSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

BLAST of Sed0027638 vs. NCBI nr
Match: KAA0031600.1 (wound-responsive family protein [Cucumis melo var. makuwa] >TYK07052.1 wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 2.0e-37
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIG KWKSGLKSLRQGRRLL SGEN+ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
            +VRSCD  ERIAQ++DSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

BLAST of Sed0027638 vs. ExPASy TrEMBL
Match: A0A5A7SLJ2 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003700 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.6e-38
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIG KWKSGLKSLRQGRRLL SGEN+ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
            +VRSCD  ERIAQ++DSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

BLAST of Sed0027638 vs. ExPASy TrEMBL
Match: A0A0A0K6Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.6e-38
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIG KWKSGLKSLRQGRRLL SGEN+ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
            +VRSCD  ERIAQ++DSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

BLAST of Sed0027638 vs. ExPASy TrEMBL
Match: A0A5N6RB28 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 9.7e-22
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEG 60
          MSYLNR+ MAASVAV QGHT+ G K K GLKSL+ G+R   SG ++ADLRP+S ++G + 
Sbjct: 1  MSYLNRIWMAASVAVVQGHTDQGRKVKPGLKSLQLGKRKFFSGSDSADLRPISGMIGLDF 60

Query: 61 PEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
             + S DA ER  Q ++SLRRVMYLNCWGQG
Sbjct: 61 AGFLGSSDADERPRQAEESLRRVMYLNCWGQG 92

BLAST of Sed0027638 vs. ExPASy TrEMBL
Match: A0A2N9HZV9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEG 60
          MSYLNRV MAA VAV QG T+ G KWKSG+KS++  ++ L SG +T+DLRPLS ++GS+ 
Sbjct: 1  MSYLNRVWMAAGVAVVQGKTDQGHKWKSGIKSVQLRKQKLFSGNDTSDLRPLSGMIGSDF 60

Query: 61 PEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
             + + DA ER    D+SLRRVMYLNCWGQG
Sbjct: 61 QGFLGNSDADERPMHADESLRRVMYLNCWGQG 92

BLAST of Sed0027638 vs. ExPASy TrEMBL
Match: A0A6A1VB48 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G020117 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.3e-21
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSSLVGSEG 60
          MSY+NRV MAASVAV QGH + G K KSG+ SL+ GRR   SG +++D+RPLS ++GS+ 
Sbjct: 1  MSYINRVWMAASVAVVQGHRDQGCKLKSGVDSLQHGRRKFFSGNDSSDIRPLSGMMGSDL 60

Query: 61 PEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
             + + D+ ER  Q D+SLRRVMYLNCWGQG
Sbjct: 61 DGFLGNTDSDERRRQADESLRRVMYLNCWGQG 92

BLAST of Sed0027638 vs. TAIR 10
Match: AT4G28240.1 (Wound-responsive family protein )

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-12
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 1  MSYLNRVGMAASVAVAQGHTEIGSKWKSGLKSLRQGRRLLVSGENTADLRPLSS--LVGS 60
          MSYLN+V MAAS    QG+ + G K KSGL S  + +R L     ++DLRPL++  L G 
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRL-----SSDLRPLAAADLTGD 60

Query: 61 EGPEAVRSCDAAERIAQTDDSLRRVMYLNCWGQG 93
            P   R   ++   +  D+SLR+VMYLNCW QG
Sbjct: 61 SLPSEERRRTSS---STPDESLRQVMYLNCWAQG 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7011951.16.8e-3891.30hypothetical protein SDJN02_26859, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6572339.11.5e-3790.22hypothetical protein SDJN03_29067, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589197.12.0e-3789.13hypothetical protein SDJN03_17762, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8645762.12.0e-3789.13hypothetical protein Csa_020269 [Cucumis sativus][more]
KAA0031600.12.0e-3789.13wound-responsive family protein [Cucumis melo var. makuwa] >TYK07052.1 wound-res... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SLJ29.6e-3889.13Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A0A0K6Z39.6e-3889.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1[more]
A0A5N6RB289.7e-2260.87Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1[more]
A0A2N9HZV91.3e-2159.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1[more]
A0A6A1VB486.3e-2158.70Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G020117 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G28240.12.4e-1245.74Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 9..91
e-value: 6.6E-16
score: 59.1
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 1..92
NoneNo IPR availablePANTHERPTHR33090:SF38DUF3774 DOMAIN PROTEINcoord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027638.1Sed0027638.1mRNA