Sed0027610 (gene) Chayote v1

Overview
NameSed0027610
Typegene
OrganismSechium edule (Chayote v1)
Descriptionzf-RVT domain-containing protein
LocationLG08: 28296886 .. 28298045 (-)
RNA-Seq ExpressionSed0027610
SyntenySed0027610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTTGTCTCCAACTTTGGAAAATATTTGGGGCTCCCAGCCATTGCTCGAGAAGTAAGAGGAATGATTTTTACTATATTAAGGAGAAAGTGCAAAAAGTTGTGGAAAGGTGGAAAGGGAGGTTTTTTCGGTGGCTGGCAAAAAAGTTCTGTTTGAAGTTATAGCTCAGTCCATCCCCACTTATGCCATGTCTAGTGTTAGATTTCCTAAATCTCTTTGCCATGATTTATCTAAAATTGTTGCCCGAATTTGGTGGAGAGCAACCAAATCTAGAAATCGCATTCGCTATGCTAAATAGGACAAGATATGTATGGCTAAGGATAGAGGACGTCTTGGATTCCAAAATTTAGAAGGTTTTAACCAGGCTCTTCTTGCAAAGCAAGTTTGGCGCCTTCTTATCAATCCTGTCTTTAACTAGGAGAGTGTTTTTATCCTTGATGTAAAAGGGAAAGCTAATGCCTCTTTTGTTTGGAGAAGCCTTCTGTGGGGAAGAGACTTGTTGAAATGTGGTTTACGTAGGAGAATTGGAAATGGAGAAAGCACTCCTTTCTTTAACTTGACCTTGGTCCTTTACTCTCACTTCTCCTAATATTTCAGGTGCTGAAGAGGAGGTAGTAAAGGACTATATTCCAGAAGAGGGATGTTGGAATATGGATAAACTGTCCTCTGTTCTTCTTTTGGAGGATGATGTTAATTGTGTGTCTTCTATCCCTATCTGTAAAACTCAGTTGGATGACAGATGGATATGGCACTTTACTAAATATGGAGAATTCTCAGTTAAAAGGGCTCACAAGGTGTTTATGGATAAAAGATTTGAGGAGCAGAGCTCTAATAGTGAGATGGGAAGAGCTAGTTGGAATTCCCTTTGGAAGTTAAATATTCCTTCTAAGGTAAAAAAATTTCTTTGGAGGCTGTGCAAAGGTTACATTCCCACAAATTATACTCTTTATCAAAGGCATATTAATATAGCCCCTTGGTGTGTTCAGTGTGGAAACAACATCGAATCTATTAGCCATACCTTTTTCGGTTGCAAGCTTGCCAAGAAGATTTGGAATTCGTTGAATATTGGAGTTAATCCTCTATGGGCTATTTGGAATGACAGGATCAAAGTTAATGCAGGAGAAGCAGAGTTAACTGGATTTGGAGCTACTGAATGA

mRNA sequence

ATGAGTGTTGTCTCCAACTTTGGAAAATATTTGGGGCTCCCAGCCATTGCTCGAGAAGTAAGAGGAATGATTTTTACTATATTAAGGAGAAAGTGCAAAAAGTTGTGGAAAGGTGGAAAGGGAGGTGCTGAAGAGGAGGTAGTAAAGGACTATATTCCAGAAGAGGGATGTTGGAATATGGATAAACTGTCCTCTGTTCTTCTTTTGGAGGATGATGTTAATTGTGTGTCTTCTATCCCTATCTGTAAAACTCAGTTGGATGACAGATGGATATGGCACTTTACTAAATATGGAGAATTCTCAGTTAAAAGGGCTCACAAGTGTGGAAACAACATCGAATCTATTAGCCATACCTTTTTCGGTTGCAAGCTTGCCAAGAAGATTTGGAATTCGTTGAATATTGGAGTTAATCCTCTATGGGCTATTTGGAATGACAGGATCAAAGTTAATGCAGGAGAAGCAGAGTTAACTGGATTTGGAGCTACTGAATGA

Coding sequence (CDS)

ATGAGTGTTGTCTCCAACTTTGGAAAATATTTGGGGCTCCCAGCCATTGCTCGAGAAGTAAGAGGAATGATTTTTACTATATTAAGGAGAAAGTGCAAAAAGTTGTGGAAAGGTGGAAAGGGAGGTGCTGAAGAGGAGGTAGTAAAGGACTATATTCCAGAAGAGGGATGTTGGAATATGGATAAACTGTCCTCTGTTCTTCTTTTGGAGGATGATGTTAATTGTGTGTCTTCTATCCCTATCTGTAAAACTCAGTTGGATGACAGATGGATATGGCACTTTACTAAATATGGAGAATTCTCAGTTAAAAGGGCTCACAAGTGTGGAAACAACATCGAATCTATTAGCCATACCTTTTTCGGTTGCAAGCTTGCCAAGAAGATTTGGAATTCGTTGAATATTGGAGTTAATCCTCTATGGGCTATTTGGAATGACAGGATCAAAGTTAATGCAGGAGAAGCAGAGTTAACTGGATTTGGAGCTACTGAATGA

Protein sequence

MSVVSNFGKYLGLPAIAREVRGMIFTILRRKCKKLWKGGKGGAEEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHKCGNNIESISHTFFGCKLAKKIWNSLNIGVNPLWAIWNDRIKVNAGEAELTGFGATE
Homology
BLAST of Sed0027610 vs. NCBI nr
Match: XP_021801569.1 (uncharacterized protein LOC110745747 isoform X1 [Prunus avium])

HSP 1 Score: 64.7 bits (156), Expect = 8.5e-07
Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 0

Query: 44  EEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVK 103
           +E  V D+I   G WN+D L ++   E+DV  ++SIP+      DRWIWH+T  G +SVK
Sbjct: 77  QETKVSDFIFPVGNWNVD-LLNLCFQEEDVKAITSIPLSVNFHKDRWIWHYTTNGTYSVK 136

Query: 104 RAHK--------CGNNIESISHTFFGCKLAKKIWN 131
             ++        C   + S S     C   +K+W+
Sbjct: 137 SGYRLEMSKKKECSGVVASSSEPRIRCAFWRKVWS 170

BLAST of Sed0027610 vs. NCBI nr
Match: OMO77499.1 (putative ribonuclease H protein [Corchorus olitorius])

HSP 1 Score: 61.6 bits (148), Expect = 7.2e-06
Identity = 31/98 (31.63%), Postives = 46/98 (46.94%), Query Frame = 0

Query: 47  VVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRA 106
           +VKD I  +   W +D L  +  L      +  +PI    + D+ IWHFTK   + VK  
Sbjct: 113 LVKDLIDMDRRRWRLDLLHRIFDL-SVTKAILKVPIGSPNVQDKLIWHFTKDDSYFVKSG 172

Query: 107 H-----KCGNNIESISHTFFGCKLAKKIWNSLNIGVNP 139
           +     +CG  +ESI H  F C  A+ +W + N    P
Sbjct: 173 YRLLKSRCGEEVESIEHILFFCPFAQAVWQASNFNYTP 209

BLAST of Sed0027610 vs. NCBI nr
Match: OMO91045.1 (Endonuclease/exonuclease/phosphatase [Corchorus capsularis])

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-05
Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 0

Query: 32   CKKLWKGGKGGAEEEVVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRW 91
            C K+++ G       +VKD I  E  CW  + +      + D+  +  IPI   Q+DDR 
Sbjct: 939  CSKIYREG-----PMIVKDLINFERRCWK-ENVIRAFFNQTDIKTIKKIPIGSEQIDDRI 998

Query: 92   IWHFTKYGEFSVKRAHKC----GNNIESISHTFFGCKLA---KKIWNSLNIGVNPLWAIW 144
            IWHFT+ G +SVK  +K      ++I+    +  G + A   +KIWN LN+       IW
Sbjct: 999  IWHFTRDGNYSVKSGYKLLLSKTSSIDDNGQSSSGVQQAGYWRKIWN-LNVAPKIQNFIW 1051

BLAST of Sed0027610 vs. NCBI nr
Match: KAF4404898.1 (hypothetical protein G4B88_006284 [Cannabis sativa])

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-05
Identity = 42/150 (28.00%), Postives = 62/150 (41.33%), Query Frame = 0

Query: 29  RRKCKKLWKGGKGGAEEEV--VKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQL 88
           R + + +W   +     EV  V D I   GCWN   +     L  D  C+SSIP+     
Sbjct: 47  RFRFENIWSTDEESPAYEVARVSDLIGSPGCWNFTVIHQHFNL-PDAECISSIPLSLFNH 106

Query: 89  DDRWIWHFTKYGEFSVKRAHKCGNNIE-----SISHT-------FFGCKLAKKI----WN 148
           +D W WH+T +G +SV   +     ++     S S         F+G K+ +KI    W 
Sbjct: 107 EDSWFWHYTNHGNYSVGSGYNTAMTLDKSLPSSASDVFSTWWKQFWGLKIPRKILHFAWR 166

Query: 149 SLNIGVNPLWAIWNDRIKVNAGEAELTGFG 161
             +  + P       R  V+    EL GFG
Sbjct: 167 GFH-EILPTRIGLEKRKIVSNNSCELCGFG 194

BLAST of Sed0027610 vs. NCBI nr
Match: KAF4363267.1 (hypothetical protein G4B88_016078 [Cannabis sativa])

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-05
Identity = 40/120 (33.33%), Postives = 59/120 (49.17%), Query Frame = 0

Query: 47  VVKDYIPEEGC-WNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVK-- 106
           +VKD I E    WN+  L + L  E D  C+ SIPICK   DD W+W+F + G +SVK  
Sbjct: 34  LVKDLIEESRTGWNVGLLRA-LFNEVDQQCIRSIPICKFVKDDAWLWNFIEDGSYSVKSG 93

Query: 107 --RAHKCGNNIESISHTFFG-------CKLAKKI--WNSLNIGVNPLWAIWNDRIKVNAG 153
             RA +  ++I S S   F          +A ++   +   + +   W IW +R +V  G
Sbjct: 94  YFRASQVESSIVSPSKDVFSFLKNSQTILMASEVLSQSEFELFLVATWYIWGERTQVIHG 152

BLAST of Sed0027610 vs. ExPASy TrEMBL
Match: A0A6P5RF81 (uncharacterized protein LOC110745747 isoform X1 OS=Prunus avium OX=42229 GN=LOC110745747 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.1e-07
Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 0

Query: 44  EEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVK 103
           +E  V D+I   G WN+D L ++   E+DV  ++SIP+      DRWIWH+T  G +SVK
Sbjct: 77  QETKVSDFIFPVGNWNVD-LLNLCFQEEDVKAITSIPLSVNFHKDRWIWHYTTNGTYSVK 136

Query: 104 RAHK--------CGNNIESISHTFFGCKLAKKIWN 131
             ++        C   + S S     C   +K+W+
Sbjct: 137 SGYRLEMSKKKECSGVVASSSEPRIRCAFWRKVWS 170

BLAST of Sed0027610 vs. ExPASy TrEMBL
Match: A0A803NGI9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 35/132 (26.52%), Postives = 54/132 (40.91%), Query Frame = 0

Query: 42  GAEEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFS 101
           G  + +V  YI ++  WN+  L+       DV+ + SIP+  + + D+WIWHFT   E++
Sbjct: 749 GDTQNLVSYYITDDNEWNLPLLARDFSAV-DVDYILSIPLSSSSVSDQWIWHFTNSNEYT 808

Query: 102 VKRAHK------------------------------------CGNNIESISHTFFGCKLA 138
           V+  +                                     C N  ES+ H  F CK A
Sbjct: 809 VQSGYHLANDLEDSDLSNSSNNQRYLVEILWNPATPIQACSLCSNAWESVEHALFLCKHA 868

BLAST of Sed0027610 vs. ExPASy TrEMBL
Match: A0A1R3I4N6 (Putative ribonuclease H protein OS=Corchorus olitorius OX=93759 GN=COLO4_25140 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-06
Identity = 31/98 (31.63%), Postives = 46/98 (46.94%), Query Frame = 0

Query: 47  VVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRA 106
           +VKD I  +   W +D L  +  L      +  +PI    + D+ IWHFTK   + VK  
Sbjct: 113 LVKDLIDMDRRRWRLDLLHRIFDL-SVTKAILKVPIGSPNVQDKLIWHFTKDDSYFVKSG 172

Query: 107 H-----KCGNNIESISHTFFGCKLAKKIWNSLNIGVNP 139
           +     +CG  +ESI H  F C  A+ +W + N    P
Sbjct: 173 YRLLKSRCGEEVESIEHILFFCPFAQAVWQASNFNYTP 209

BLAST of Sed0027610 vs. ExPASy TrEMBL
Match: A0A1R3J874 (Endonuclease/exonuclease/phosphatase OS=Corchorus capsularis OX=210143 GN=CCACVL1_07229 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 0

Query: 32   CKKLWKGGKGGAEEEVVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRW 91
            C K+++ G       +VKD I  E  CW  + +      + D+  +  IPI   Q+DDR 
Sbjct: 939  CSKIYREG-----PMIVKDLINFERRCWK-ENVIRAFFNQTDIKTIKKIPIGSEQIDDRI 998

Query: 92   IWHFTKYGEFSVKRAHKC----GNNIESISHTFFGCKLA---KKIWNSLNIGVNPLWAIW 144
            IWHFT+ G +SVK  +K      ++I+    +  G + A   +KIWN LN+       IW
Sbjct: 999  IWHFTRDGNYSVKSGYKLLLSKTSSIDDNGQSSSGVQQAGYWRKIWN-LNVAPKIQNFIW 1051

BLAST of Sed0027610 vs. ExPASy TrEMBL
Match: A0A7J6EXV6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016078 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 40/120 (33.33%), Postives = 59/120 (49.17%), Query Frame = 0

Query: 47  VVKDYIPEEGC-WNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVK-- 106
           +VKD I E    WN+  L + L  E D  C+ SIPICK   DD W+W+F + G +SVK  
Sbjct: 34  LVKDLIEESRTGWNVGLLRA-LFNEVDQQCIRSIPICKFVKDDAWLWNFIEDGSYSVKSG 93

Query: 107 --RAHKCGNNIESISHTFFG-------CKLAKKI--WNSLNIGVNPLWAIWNDRIKVNAG 153
             RA +  ++I S S   F          +A ++   +   + +   W IW +R +V  G
Sbjct: 94  YFRASQVESSIVSPSKDVFSFLKNSQTILMASEVLSQSEFELFLVATWYIWGERTQVIHG 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021801569.18.5e-0733.68uncharacterized protein LOC110745747 isoform X1 [Prunus avium][more]
OMO77499.17.2e-0631.63putative ribonuclease H protein [Corchorus olitorius][more]
OMO91045.13.6e-0532.50Endonuclease/exonuclease/phosphatase [Corchorus capsularis][more]
KAF4404898.14.6e-0528.00hypothetical protein G4B88_006284 [Cannabis sativa][more]
KAF4363267.14.6e-0533.33hypothetical protein G4B88_016078 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P5RF814.1e-0733.68uncharacterized protein LOC110745747 isoform X1 OS=Prunus avium OX=42229 GN=LOC1... [more]
A0A803NGI92.0e-0626.52Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A1R3I4N63.5e-0631.63Putative ribonuclease H protein OS=Corchorus olitorius OX=93759 GN=COLO4_25140 P... [more]
A0A1R3J8741.7e-0532.50Endonuclease/exonuclease/phosphatase OS=Corchorus capsularis OX=210143 GN=CCACVL... [more]
A0A7J6EXV62.2e-0533.33Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016078 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027610.1Sed0027610.1mRNA